EWM26742.1, cds4002 (CDS) Nannochloropsis gaditana

Overview
NameEWM26742.1
Unique Namecds4002
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:626506..628311 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26742.1
Producte3 ubiquitin-protein ligase rnf8
Orig transcript idgnl|cribi|Naga_100001g104.8253.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:626506..628311 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|585108830|gb|EWM26742.1| (e3 ubiquitin-protein ligase rnf8 [Nannochloropsis gaditana])

HSP 1 Score: 1233.39 bits (3190), Expect = 0.000e+0
Identity = 601/601 (100.00%), Postives = 601/601 (100.00%), Query Frame = 0
Query:    1 MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTVLTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEASRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR 601
            MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTVLTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEASRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR
Sbjct:    1 MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTVLTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEASRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR 601          
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|299117417|emb|CBN73920.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 2.755e-9
Identity = 56/202 (27.72%), Postives = 84/202 (41.58%), Query Frame = 0
Query:  409 DLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMR-----------REMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFK 599
            + EC IC + +V    +D   GHTFCG C+ERW++    G   CP C+ PV   +P+R+ D MI K V A+    E+ ++Y R+  AH                          +    QG  AGI    G+ T   A      +R A     R               +     ++ + + T L+VA MLV+ V+  RG +
Sbjct:  182 EFECDICFDVLVGVHVLD-NCGHTFCGACMERWIDNAPQG--ECPVCRTPVDKLVPVRKMDEMIAKAVEAAAPSRERDAWYERK--AHWEGTARRRQEARAAAAAAAAAATPSHSVVHAQGAAAGIFGRTGVATWFGA----TDAREAGGRRNRGRGEEEGRGRRDEDEDDDDDGFRLDKMQTVLAVAVMLVMAVIKMRGLR 374          
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|676272068|gb|KFO26987.1| (E3 ubiquitin-protein ligase RNF8 [Fukomys damarensis])

HSP 1 Score: 65.4698 bits (158), Expect = 1.690e-7
Identity = 56/191 (29.32%), Postives = 82/191 (42.93%), Query Frame = 0
Query:  382 EDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPW 572
            E+ D V AQK   E     +   L N +L+C+IC EY +EA  ++C   H+FC  CI  W++  +     CP C+K + S       D  I+K V      D   S  + R +  MR   ER++++E+             IG + G+G++A A RQ                         G GEAA PW
Sbjct:  491 EEKDKVQAQK---EEVLSHMNDVLEN-ELQCIICSEYFIEAVTLNC--AHSFCSYCISEWMKRKI----ECPICRKDIKSKTHSLVLDNCIDKMV------DSLSSEVKERRIDLMR---ERKEQKEK-------------IG-VLGVGSQAQAGRQ-------------------------GTGEAAGPW 623          
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|641721116|ref|XP_008150248.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 [Eptesicus fuscus])

HSP 1 Score: 64.6994 bits (156), Expect = 2.407e-7
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 0
Query:  374 VLDELLRSEDDDDVIAQ---KLFAETPDD------QVRRFLRNLD------LECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMER 503
            +++EL RS+ D + I Q   K   +T ++      Q    L +++      L+C+IC EY +EA  ++C   H+FC  CI  W++  V     CP C+K + S  P    D  I K V   NL  E      RRT    RR+ ER
Sbjct:  352 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKV----ECPICRKDIKSKTPSLVLDNCISKMV--DNLSSE---VKERRTDLIKRRKAER 485          
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|1069786780|ref|XP_018318638.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X1 [Agrilus planipennis])

HSP 1 Score: 64.3142 bits (155), Expect = 3.318e-7
Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 0
Query:  409 DLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREM---ERQDREEEETATAATQGPFA 521
            +L+C+IC E  ++A  + C   HTFC  CI+ W +   A    CP C+ P+ S +P    D+ IEK +  +   DE+    R + +A    +     +  R +E++AT      FA
Sbjct:  388 ELQCIICTEMFIKAVTLSCS--HTFCKFCIDEWKKKKTA----CPICRAPICSILPTLVIDSFIEKILENA---DEETKLQRSKLIADRESQQASGSKDYRGKEKSATDVFDEAFA 494          
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|1069786782|ref|XP_018318639.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-B-like isoform X2 [Agrilus planipennis])

HSP 1 Score: 63.929 bits (154), Expect = 4.208e-7
Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 0
Query:  409 DLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREM---ERQDREEEETATAATQGPFA 521
            +L+C+IC E  ++A  + C   HTFC  CI+ W +   A    CP C+ P+ S +P    D+ IEK +  +   DE+    R + +A    +     +  R +E++AT      FA
Sbjct:  294 ELQCIICTEMFIKAVTLSCS--HTFCKFCIDEWKKKKTA----CPICRAPICSILPTLVIDSFIEKILENA---DEETKLQRSKLIADRESQQASGSKDYRGKEKSATDVFDEAFA 400          
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|940771982|ref|XP_014302228.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 isoform X5 [Myotis lucifugus])

HSP 1 Score: 63.929 bits (154), Expect = 4.857e-7
Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = 0
Query:  374 VLDELLRSEDDDDVIAQ---KLFAETPDD------QVRRFLRNLD------LECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMER 503
            +++EL RS+ D + I Q   K   +T ++      Q    L +++      L+C+IC EY +EA  ++C   H+FC  CI  W++  V     CP C+K + S  P    D  I K V   NL  E      RRT    RR+ +R
Sbjct:  395 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKV----ECPICRKDIKSKTPSLVLDNCISKMV--DNLSSE---VKERRTDLIKRRKAQR 528          
The following BLAST results are available for this feature:
BLAST of EWM26742.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585108830|gb|EWM26742.1|0.000e+0100.00e3 ubiquitin-protein ligase rnf8 [Nannochloropsis ... [more]
gi|299117417|emb|CBN73920.1|2.755e-927.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|676272068|gb|KFO26987.1|1.690e-729.32E3 ubiquitin-protein ligase RNF8 [Fukomys damarens... [more]
gi|641721116|ref|XP_008150248.1|2.407e-732.41PREDICTED: E3 ubiquitin-protein ligase RNF8 [Eptes... [more]
gi|1069786780|ref|XP_018318638.1|3.318e-730.17PREDICTED: E3 ubiquitin-protein ligase RNF8-like i... [more]
gi|1069786782|ref|XP_018318639.1|4.208e-730.17PREDICTED: E3 ubiquitin-protein ligase RNF8-B-like... [more]
gi|940771982|ref|XP_014302228.1|4.857e-731.72PREDICTED: E3 ubiquitin-protein ligase RNF8 isofor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4012rna4012Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications