EWM26742.1, cds4002 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|585108830|gb|EWM26742.1| (e3 ubiquitin-protein ligase rnf8 [Nannochloropsis gaditana]) HSP 1 Score: 1233.39 bits (3190), Expect = 0.000e+0 Identity = 601/601 (100.00%), Postives = 601/601 (100.00%), Query Frame = 0
Query: 1 MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTVLTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEASRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR 601
MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTVLTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEASRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR
Sbjct: 1 MARRGLSHNLPNYVKGGCTVGACTYQSQAARTFHDDDDDDSGGVGRDSTVLTTDTTTGERAEEVRVQSNALKDANLSPVATPAPHLSRDCTISAREVEEASRILFAPEGATSHFHHHRAEAAYQDSEANKLQKRVSGAAKTSERAPQVEAGIDEAVEDKQRVNLAKGMAPTQSLPPMLRTRSPVSRSLAPLPSTLLARLHPQPEVHAEILRFGEALASNPRIQNAIVEELDMHYPPSRKAFEREGTGENDEGAAERSLAQMESAVRRLLGRTSAEDRAEAATQEGEEGNEERRGFGSAGGGYSGRSSFLTDSFEVLGAMSAEWSSASSKNGGAEEKVGNEREDMAENLPSNSFVSVGRYMRRKDSLAGEVSDEVLDELLRSEDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFKTR 601
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|299117417|emb|CBN73920.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 70.0922 bits (170), Expect = 2.755e-9 Identity = 56/202 (27.72%), Postives = 84/202 (41.58%), Query Frame = 0
Query: 409 DLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMR-----------REMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPWWKSELLSTALSVATMLVLLVLFKRGFK 599
+ EC IC + +V +D GHTFCG C+ERW++ G CP C+ PV +P+R+ D MI K V A+ E+ ++Y R+ AH + QG AGI G+ T A +R A R + ++ + + T L+VA MLV+ V+ RG +
Sbjct: 182 EFECDICFDVLVGVHVLD-NCGHTFCGACMERWIDNAPQG--ECPVCRTPVDKLVPVRKMDEMIAKAVEAAAPSRERDAWYERK--AHWEGTARRRQEARAAAAAAAAAATPSHSVVHAQGAAAGIFGRTGVATWFGA----TDAREAGGRRNRGRGEEEGRGRRDEDEDDDDDGFRLDKMQTVLAVAVMLVMAVIKMRGLR 374
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|676272068|gb|KFO26987.1| (E3 ubiquitin-protein ligase RNF8 [Fukomys damarensis]) HSP 1 Score: 65.4698 bits (158), Expect = 1.690e-7 Identity = 56/191 (29.32%), Postives = 82/191 (42.93%), Query Frame = 0
Query: 382 EDDDDVIAQKLFAETPDDQVRRFLRNLDLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMERQDREEEETATAATQGPFAGIGNLFGLGTRANARRQRRRSRRATAAATRAAAGASRTTGDGGAGEAAQPW 572
E+ D V AQK E + L N +L+C+IC EY +EA ++C H+FC CI W++ + CP C+K + S D I+K V D S + R + MR ER++++E+ IG + G+G++A A RQ G GEAA PW
Sbjct: 491 EEKDKVQAQK---EEVLSHMNDVLEN-ELQCIICSEYFIEAVTLNC--AHSFCSYCISEWMKRKI----ECPICRKDIKSKTHSLVLDNCIDKMV------DSLSSEVKERRIDLMR---ERKEQKEK-------------IG-VLGVGSQAQAGRQ-------------------------GTGEAAGPW 623
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|641721116|ref|XP_008150248.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 [Eptesicus fuscus]) HSP 1 Score: 64.6994 bits (156), Expect = 2.407e-7 Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 0
Query: 374 VLDELLRSEDDDDVIAQ---KLFAETPDD------QVRRFLRNLD------LECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMER 503
+++EL RS+ D + I Q K +T ++ Q L +++ L+C+IC EY +EA ++C H+FC CI W++ V CP C+K + S P D I K V NL E RRT RR+ ER
Sbjct: 352 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKV----ECPICRKDIKSKTPSLVLDNCISKMV--DNLSSE---VKERRTDLIKRRKAER 485
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|1069786780|ref|XP_018318638.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X1 [Agrilus planipennis]) HSP 1 Score: 64.3142 bits (155), Expect = 3.318e-7 Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 0
Query: 409 DLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREM---ERQDREEEETATAATQGPFA 521
+L+C+IC E ++A + C HTFC CI+ W + A CP C+ P+ S +P D+ IEK + + DE+ R + +A + + R +E++AT FA
Sbjct: 388 ELQCIICTEMFIKAVTLSCS--HTFCKFCIDEWKKKKTA----CPICRAPICSILPTLVIDSFIEKILENA---DEETKLQRSKLIADRESQQASGSKDYRGKEKSATDVFDEAFA 494
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|1069786782|ref|XP_018318639.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8-B-like isoform X2 [Agrilus planipennis]) HSP 1 Score: 63.929 bits (154), Expect = 4.208e-7 Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 0
Query: 409 DLECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREM---ERQDREEEETATAATQGPFA 521
+L+C+IC E ++A + C HTFC CI+ W + A CP C+ P+ S +P D+ IEK + + DE+ R + +A + + R +E++AT FA
Sbjct: 294 ELQCIICTEMFIKAVTLSCS--HTFCKFCIDEWKKKKTA----CPICRAPICSILPTLVIDSFIEKILENA---DEETKLQRSKLIADRESQQASGSKDYRGKEKSATDVFDEAFA 400
BLAST of EWM26742.1 vs. NCBI_GenBank
Match: gi|940771982|ref|XP_014302228.1| (PREDICTED: E3 ubiquitin-protein ligase RNF8 isoform X5 [Myotis lucifugus]) HSP 1 Score: 63.929 bits (154), Expect = 4.857e-7 Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = 0
Query: 374 VLDELLRSEDDDDVIAQ---KLFAETPDD------QVRRFLRNLD------LECVICHEYMVEAAAVDCGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRRTLAHMRREMER 503
+++EL RS+ D + I Q K +T ++ Q L +++ L+C+IC EY +EA ++C H+FC CI W++ V CP C+K + S P D I K V NL E RRT RR+ +R
Sbjct: 395 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNC--AHSFCSYCINEWMKRKV----ECPICRKDIKSKTPSLVLDNCISKMV--DNLSSE---VKERRTDLIKRRKAQR 528 The following BLAST results are available for this feature:
BLAST of EWM26742.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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