rna401, rna401 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna401
Unique Name	rna401
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	291
Alignment location	CM002455.1:994872..995660 -

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Properties


Property Name	Value
Product	Uncharacterized protein family UPF0405
Orig transcript id	gnl\|cribi\|Naga_100003g85.1784.mrna
Orig protein id	gnl\|cribi\|Naga_100003g85.1784
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:994872..995660 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g85	gene385	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30267.1	cds401	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna401	rna401-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:994872..995660-
coding sequence from alignment at CM002455.1:994872..995660-

mRNA sequence

>rna401 ID=rna401|Name=rna401|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGGCGTGCAGATCTGTCATGATGCTTTTAAAAATGGTAATTTACGAGGT
AGTCACTTCACGGATGGAAGTGTATGACCACAAACCTTTGCTGAACACCT
CTGACACGCGAAAGTCTCATGGGGAGGATCGCGAGGCTCTTATTTTTTGC
TTGTTTACCTATTTTTCCATCACTTTCCTTGGAACAGAACCATTTATCGT
CTTGCCTGGTGCGCCTGATTGTAGTCCGTGTAGTGTTCGTAGCGGTAGCG
ATGAATGTAAAATGATTTCCGCCTTTGCCCCTTGCTCCTGA

protein sequence of rna401

>rna401-protein ID=rna401-protein|Name=rna401|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVV
CLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSL
FSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLL
RRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNA
HVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSL
SSAKVGINVAPT

mRNA from alignment at CM002455.1:994872..995660-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna401 ID=rna401|Name=rna401|organism=Nannochloropsis gaditana|type=mRNA|length=789bp|location=Sequence derived from alignment at CM002455.1:994872..995660- (Nannochloropsis gaditana)
ATGGAAAGCTTTGAGGATGCCTTGCTGGAGTGGCGGGGCATTGTGGCGGG
ACAAATGGCGCTTCTCACAGACGAGGACCCGCTGGCGGACGGACACGCGT
TGCTTCTTCAATTGATCGCGCAGGGGCTAAGGCATGGCACACGCGTTGTT
TGCCTGGCGTCATCATTTCCAGAAGCGCAGTACACCTCGGTGCTTCGAAG
GCTTGGAGTGGAGAAAGGCAAGCTTGACGGGACCTCTGGTGCATTTCGTT
ACGTCTCGTTGCTTCCGACATACCCCTCTTCAGCTTCCACACAATCACTC
TTCTCATCCCTCGCCGCCATGATGACGAGTTTGGAGCAGGATCAAAGCTT
GCCTACCATGATTGTCATTGATGACATAAGCGTTGTTGCTGGCGTGTACG
GGATGCGTGCAGCCGTGGACTTTGTACAGACATGCCGGGGCTTGCTTTTG
CGACGTCATCCTAGCAACGCTGGTGTAGGGCGGCAAGCAGCTTCCTTGCT
CGTCCGCGCATTGGGAAAGGAAAATGACGAATGTGCAAACTCCCTCAGCG
TGCAAAACTCAACGTCGATAAATCTTCTGGCTTATCTTTTGCGAAATGCA
CACGTGCATGTGGAAGTATGTCCTCTAGCCTCTGGATACAGTCGTGATGT
TCATGGCCTCATCACAGTACGGCATCAGGAAGCGACGCACGCAGAGCTTC
TCAACTTCAAAGTGGGTGAAGGTGGCATCAAATGTGGGCGGCTGTCTCTG
TCCTCGGCGAAGGTTGGGATAAACGTAGCGCCGACATAG

Coding sequence (CDS) from alignment at CM002455.1:994872..995660-

>rna401 ID=rna401|Name=rna401|organism=Nannochloropsis gaditana|type=CDS|length=789bp|location=Sequence derived from alignment at CM002455.1:994872..995660- (Nannochloropsis gaditana)
ATGGAAAGCTTTGAGGATGCCTTGCTGGAGTGGCGGGGCATTGTGGCGGG
ACAAATGGCGCTTCTCACAGACGAGGACCCGCTGGCGGACGGACACGCGT
TGCTTCTTCAATTGATCGCGCAGGGGCTAAGGCATGGCACACGCGTTGTT
TGCCTGGCGTCATCATTTCCAGAAGCGCAGTACACCTCGGTGCTTCGAAG
GCTTGGAGTGGAGAAAGGCAAGCTTGACGGGACCTCTGGTGCATTTCGTT
ACGTCTCGTTGCTTCCGACATACCCCTCTTCAGCTTCCACACAATCACTC
TTCTCATCCCTCGCCGCCATGATGACGAGTTTGGAGCAGGATCAAAGCTT
GCCTACCATGATTGTCATTGATGACATAAGCGTTGTTGCTGGCGTGTACG
GGATGCGTGCAGCCGTGGACTTTGTACAGACATGCCGGGGCTTGCTTTTG
CGACGTCATCCTAGCAACGCTGGTGTAGGGCGGCAAGCAGCTTCCTTGCT
CGTCCGCGCATTGGGAAAGGAAAATGACGAATGTGCAAACTCCCTCAGCG
TGCAAAACTCAACGTCGATAAATCTTCTGGCTTATCTTTTGCGAAATGCA
CACGTGCATGTGGAAGTATGTCCTCTAGCCTCTGGATACAGTCGTGATGT
TCATGGCCTCATCACAGTACGGCATCAGGAAGCGACGCACGCAGAGCTTC
TCAACTTCAAAGTGGGTGAAGGTGGCATCAAATGTGGGCGGCTGTCTCTG
TCCTCGGCGAAGGTTGGGATAAACGTAGCGCCGACATAG

Synonyms

Publications