EWM30267.1, cds401 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|585112926|gb|EWM30267.1| (Uncharacterized protein family UPF0405 [Nannochloropsis gaditana]) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query: 1 MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVAPT 262
MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVAPT
Sbjct: 1 MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVAPT 262
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|953490623|emb|CEG46277.1| (elongator complex protein 6 [Plasmopara halstedii]) HSP 1 Score: 63.5438 bits (153), Expect = 2.451e-8 Identity = 64/247 (25.91%), Postives = 107/247 (43.32%), Query Frame = 0
Query: 9 LEWRGIVAGQMALLTDEDPL-ADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRY-VSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEAT--------HAELLNFKVGEGGIKC 245
L W A Q L+ +D + A G L+ + L+ G RV ++S+ + +V R+LG+ T + + L T A+ LF+ L +++ IV+DD+S + +G A ++FV+ C+ L H N GV LL A + D A+ L + L A V + PL SGYS+D+HG +++ Q + ++++K+ E IKC
Sbjct: 12 LVWMPTSAPQQQLVIIQDCVEASGSFLVHHFTSLFLKAGHRVCVVSSANSPEHHAAVGRKLGINFATCQSTKQLYVLNWTRLETQNPKAAWMDLFNDLKRFT---DEENENAKSIVLDDVSALNWRFGEAAVLNFVRCCKTL---THEKNGGVN---VVLLTHA---DTDLPASRL---------MSPALADMATVVLTTRPLPSGYSKDIHGTLSIHRQSWSTSVHSLDEEPNVISYKILENTIKC 237
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|813141631|ref|XP_012199023.1| (hypothetical protein SPRG_19768 [Saprolegnia parasitica CBS 223.65] >gi|641536318|gb|KDO30207.1| hypothetical protein SPRG_19768 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 63.1586 bits (152), Expect = 3.253e-8 Identity = 73/266 (27.44%), Postives = 119/266 (44.74%), Query Frame = 0
Query: 7 ALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKG---------KLDGTSGAFRYVSLLPTYPS-----SASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITV--RHQEATH------AELLNFKVGEGGIKCGRLSL 250
A L + + GQ+ LL ++ A+G LL L + +R RV LA S QYTSV R++GV +DG S + + + PT S +A+T L + + + + D + +VIDD++ +A YG+ + + FV+ CR L L ++LL+ G + E + + T + +R L SGY +D+HG +TV R Q ++ A+ L FK+ E G++ R L
Sbjct: 6 AELGFNDVPRGQI-LLVNDVVEANGCFLLHHLTSMAVRAEQRVCMLALSNSVEQYTSVGRKMGVNVQAAIAQQRWLHIDGFSRPYDWCATAPTDGSFSMTDAATTSDLHALFLRVQSFVAADACV---LVIDDLTALAAFYGVASTLAFVRYCRHLALTTE----------STLLMLVHGDVDCEDHATAFIPAVTDLASTVLTVRG---------LESGYCKDIHGSVTVTPRRQPSSRPVSSILAKTLQFKLVESGMRSIRAGL 248
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|568005451|gb|ETL79748.1| (hypothetical protein L917_19676 [Phytophthora parasitica] >gi|570313536|gb|ETO61484.1| hypothetical protein F444_20509 [Phytophthora parasitica P1976]) HSP 1 Score: 63.1586 bits (152), Expect = 3.650e-8 Identity = 74/255 (29.02%), Postives = 107/255 (41.96%), Query Frame = 0
Query: 9 LEWRGIVAGQMALLTDEDPLADGHALLLQ-LIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGK---------LDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHG-LITVRHQEATHAELLN-------FKVGEGGIKC 245
L W A Q L+ ED + G L+ + L+ G RV +A + A Y +V R+LGV LD TS + T + A +LF L T+ E+D ++ IVIDD+S + +G A +DFV+ C+ L H N G LL A S+S L L A V + PL++GYS+D+HG L+ R + L+ +K+ E IKC
Sbjct: 12 LTWTPTSAPQGQLVVLEDCVEAGGVFLVHHFTSLFLKAGHRVCFVAIANSPAHYAAVGRKLGVNFAACQTKKQLQVLDWTS--------METDSTKAEWTALFEDLKNF-TNEEKDAAVS--IVIDDVSALKWRFGDAAVLDFVRCCKTL---THNKN---GAANVVLLTHA------------DTDLSSSRPLSLALAEMATVVLATKPLSTGYSKDIHGTLLVCRQSQGFSVNALDEEPTAIPYKILESTIKC 237
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|1173960722|gb|OQS06822.1| (hypothetical protein THRCLA_01157 [Thraustotheca clavata]) HSP 1 Score: 61.6178 bits (148), Expect = 1.322e-7 Identity = 65/255 (25.49%), Postives = 115/255 (45.10%), Query Frame = 0
Query: 18 QMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGK---------LDGTSGAFRYVSLLPTYPS----SASTQSLFSSLAAMMTSLE---QDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHG--LITVRHQE---------ATHAELLNFKVGEGGIKC 245
Q ++ ++ A+G+ LL L+ RV +A + Q+ +V R++GV +DG S + + S P P S + ++ + L + L+ Q S+P ++VIDD+S++ YG+ AA+ F + CR L L NA ++LLV G N + + T + + + +R L +GY +D+HG ++T R+Q +T + L +K+ E GI+C
Sbjct: 16 QEVIVVNDSVQANGNFLLHYFTTLALKAEMRVCMVALNNTLDQFVAVGRKMGVNVQNAVATQKWLHIDGVSRPYDW-SAGPQTPMQFTMSTTPDAMKNDLQQLFLRLQTFIQASSVPCILVIDDLSILTYHYGLNAALMFARYCRQLAL-----NA-----KSTLLVLHHGDVNMDSQGTFLNPAITDLASIVFTVRG---------LDTGYCKDIHGSVMLTRRYQPTSQSSSLHCSTTKKSLQYKLVENGIRC 250
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|567975993|gb|ETL26523.1| (hypothetical protein L916_19817 [Phytophthora parasitica]) HSP 1 Score: 61.2326 bits (147), Expect = 1.496e-7 Identity = 73/252 (28.97%), Postives = 106/252 (42.06%), Query Frame = 0
Query: 9 LEWRGIVAGQMALLTDEDPLADGHALLLQ-LIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGK---------LDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGL-----ITVRHQEATHAELLNFKVGEGGIKC 245
L W A Q L+ ED + G L+ + L+ G RV +A + A Y +V R+LGV LD TS + T + A +LF L T+ E+D ++ IVIDD+S + +G A +DFV+ C+ L H N G LL A S+S L L A V + PL++GYS+D+HG + +E T + +K+ E IKC
Sbjct: 12 LTWTPTSAPQGQLVVLEDCVEAGGVFLVHHFTSLFLKAGHRVCFVAIANSPAHYAAVGRKLGVNFAACQTKKQLQVLDWTS--------METDSTKAEWTALFEDLKNF-TNEEKDAAVS--IVIDDVSALKWRFGDAAVLDFVRCCKTL---THNKN---GAANVVLLTHA------------DTDLSSSRPLSLALAEMATVVLATKPLSTGYSKDIHGTSQGFSVNALDEEPT---AIPYKILESTIKC 231 The following BLAST results are available for this feature:
BLAST of EWM30267.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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