EWM30267.1, cds401 (CDS) Nannochloropsis gaditana

Overview
NameEWM30267.1
Unique Namecds401
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:994872..995660 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30267.1
ProductUncharacterized protein family UPF0405
Orig transcript idgnl|cribi|Naga_100003g85.1784.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:994872..995660 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR018627UPF0405
Homology
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|585112926|gb|EWM30267.1| (Uncharacterized protein family UPF0405 [Nannochloropsis gaditana])

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0
Query:    1 MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVAPT 262
            MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVAPT
Sbjct:    1 MESFEDALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEATHAELLNFKVGEGGIKCGRLSLSSAKVGINVAPT 262          
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|953490623|emb|CEG46277.1| (elongator complex protein 6 [Plasmopara halstedii])

HSP 1 Score: 63.5438 bits (153), Expect = 2.451e-8
Identity = 64/247 (25.91%), Postives = 107/247 (43.32%), Query Frame = 0
Query:    9 LEWRGIVAGQMALLTDEDPL-ADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGKLDGTSGAFRY-VSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITVRHQEAT--------HAELLNFKVGEGGIKC 245
            L W    A Q  L+  +D + A G  L+    +  L+ G RV  ++S+     + +V R+LG+       T   +    + L T    A+   LF+ L       +++      IV+DD+S +   +G  A ++FV+ C+ L    H  N GV      LL  A   + D  A+ L         +   L   A V +   PL SGYS+D+HG +++  Q  +           ++++K+ E  IKC
Sbjct:   12 LVWMPTSAPQQQLVIIQDCVEASGSFLVHHFTSLFLKAGHRVCVVSSANSPEHHAAVGRKLGINFATCQSTKQLYVLNWTRLETQNPKAAWMDLFNDLKRFT---DEENENAKSIVLDDVSALNWRFGEAAVLNFVRCCKTL---THEKNGGVN---VVLLTHA---DTDLPASRL---------MSPALADMATVVLTTRPLPSGYSKDIHGTLSIHRQSWSTSVHSLDEEPNVISYKILENTIKC 237          
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|813141631|ref|XP_012199023.1| (hypothetical protein SPRG_19768 [Saprolegnia parasitica CBS 223.65] >gi|641536318|gb|KDO30207.1| hypothetical protein SPRG_19768 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.1586 bits (152), Expect = 3.253e-8
Identity = 73/266 (27.44%), Postives = 119/266 (44.74%), Query Frame = 0
Query:    7 ALLEWRGIVAGQMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKG---------KLDGTSGAFRYVSLLPTYPS-----SASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGLITV--RHQEATH------AELLNFKVGEGGIKCGRLSL 250
            A L +  +  GQ+ LL ++   A+G  LL  L +  +R   RV  LA S    QYTSV R++GV             +DG S  + + +  PT  S     +A+T  L +    + + +  D  +   +VIDD++ +A  YG+ + + FV+ CR L L             ++LL+   G  + E   +  +   T +      +R          L SGY +D+HG +TV  R Q ++       A+ L FK+ E G++  R  L
Sbjct:    6 AELGFNDVPRGQI-LLVNDVVEANGCFLLHHLTSMAVRAEQRVCMLALSNSVEQYTSVGRKMGVNVQAAIAQQRWLHIDGFSRPYDWCATAPTDGSFSMTDAATTSDLHALFLRVQSFVAADACV---LVIDDLTALAAFYGVASTLAFVRYCRHLALTTE----------STLLMLVHGDVDCEDHATAFIPAVTDLASTVLTVRG---------LESGYCKDIHGSVTVTPRRQPSSRPVSSILAKTLQFKLVESGMRSIRAGL 248          
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|568005451|gb|ETL79748.1| (hypothetical protein L917_19676 [Phytophthora parasitica] >gi|570313536|gb|ETO61484.1| hypothetical protein F444_20509 [Phytophthora parasitica P1976])

HSP 1 Score: 63.1586 bits (152), Expect = 3.650e-8
Identity = 74/255 (29.02%), Postives = 107/255 (41.96%), Query Frame = 0
Query:    9 LEWRGIVAGQMALLTDEDPLADGHALLLQ-LIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGK---------LDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHG-LITVRHQEATHAELLN-------FKVGEGGIKC 245
            L W    A Q  L+  ED +  G   L+    +  L+ G RV  +A +   A Y +V R+LGV             LD TS        + T  + A   +LF  L    T+ E+D ++   IVIDD+S +   +G  A +DFV+ C+ L    H  N   G     LL  A                S+S  L   L   A V +   PL++GYS+D+HG L+  R  +      L+       +K+ E  IKC
Sbjct:   12 LTWTPTSAPQGQLVVLEDCVEAGGVFLVHHFTSLFLKAGHRVCFVAIANSPAHYAAVGRKLGVNFAACQTKKQLQVLDWTS--------METDSTKAEWTALFEDLKNF-TNEEKDAAVS--IVIDDVSALKWRFGDAAVLDFVRCCKTL---THNKN---GAANVVLLTHA------------DTDLSSSRPLSLALAEMATVVLATKPLSTGYSKDIHGTLLVCRQSQGFSVNALDEEPTAIPYKILESTIKC 237          
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|1173960722|gb|OQS06822.1| (hypothetical protein THRCLA_01157 [Thraustotheca clavata])

HSP 1 Score: 61.6178 bits (148), Expect = 1.322e-7
Identity = 65/255 (25.49%), Postives = 115/255 (45.10%), Query Frame = 0
Query:   18 QMALLTDEDPLADGHALLLQLIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGK---------LDGTSGAFRYVSLLPTYPS----SASTQSLFSSLAAMMTSLE---QDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHG--LITVRHQE---------ATHAELLNFKVGEGGIKC 245
            Q  ++ ++   A+G+ LL       L+   RV  +A +    Q+ +V R++GV             +DG S  + + S  P  P     S +  ++ + L  +   L+   Q  S+P ++VIDD+S++   YG+ AA+ F + CR L L     NA      ++LLV   G  N +   +      T +  + + +R          L +GY +D+HG  ++T R+Q          +T  + L +K+ E GI+C
Sbjct:   16 QEVIVVNDSVQANGNFLLHYFTTLALKAEMRVCMVALNNTLDQFVAVGRKMGVNVQNAVATQKWLHIDGVSRPYDW-SAGPQTPMQFTMSTTPDAMKNDLQQLFLRLQTFIQASSVPCILVIDDLSILTYHYGLNAALMFARYCRQLAL-----NA-----KSTLLVLHHGDVNMDSQGTFLNPAITDLASIVFTVRG---------LDTGYCKDIHGSVMLTRRYQPTSQSSSLHCSTTKKSLQYKLVENGIRC 250          
BLAST of EWM30267.1 vs. NCBI_GenBank
Match: gi|567975993|gb|ETL26523.1| (hypothetical protein L916_19817 [Phytophthora parasitica])

HSP 1 Score: 61.2326 bits (147), Expect = 1.496e-7
Identity = 73/252 (28.97%), Postives = 106/252 (42.06%), Query Frame = 0
Query:    9 LEWRGIVAGQMALLTDEDPLADGHALLLQ-LIAQGLRHGTRVVCLASSFPEAQYTSVLRRLGVEKGK---------LDGTSGAFRYVSLLPTYPSSASTQSLFSSLAAMMTSLEQDQSLPTMIVIDDISVVAGVYGMRAAVDFVQTCRGLLLRRHPSNAGVGRQAASLLVRALGKENDECANSLSVQNSTSINLLAYLLRNAHVHVEVCPLASGYSRDVHGL-----ITVRHQEATHAELLNFKVGEGGIKC 245
            L W    A Q  L+  ED +  G   L+    +  L+ G RV  +A +   A Y +V R+LGV             LD TS        + T  + A   +LF  L    T+ E+D ++   IVIDD+S +   +G  A +DFV+ C+ L    H  N   G     LL  A                S+S  L   L   A V +   PL++GYS+D+HG      +    +E T    + +K+ E  IKC
Sbjct:   12 LTWTPTSAPQGQLVVLEDCVEAGGVFLVHHFTSLFLKAGHRVCFVAIANSPAHYAAVGRKLGVNFAACQTKKQLQVLDWTS--------METDSTKAEWTALFEDLKNF-TNEEKDAAVS--IVIDDVSALKWRFGDAAVLDFVRCCKTL---THNKN---GAANVVLLTHA------------DTDLSSSRPLSLALAEMATVVLATKPLSTGYSKDIHGTSQGFSVNALDEEPT---AIPYKILESTIKC 231          
The following BLAST results are available for this feature:
BLAST of EWM30267.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112926|gb|EWM30267.1|0.000e+0100.00Uncharacterized protein family UPF0405 [Nannochlor... [more]
gi|953490623|emb|CEG46277.1|2.451e-825.91elongator complex protein 6 [Plasmopara halstedii][more]
gi|813141631|ref|XP_012199023.1|3.253e-827.44hypothetical protein SPRG_19768 [Saprolegnia paras... [more]
gi|568005451|gb|ETL79748.1|3.650e-829.02hypothetical protein L917_19676 [Phytophthora para... [more]
gi|1173960722|gb|OQS06822.1|1.322e-725.49hypothetical protein THRCLA_01157 [Thraustotheca c... [more]
gi|567975993|gb|ETL26523.1|1.496e-728.97hypothetical protein L916_19817 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna401rna401Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications