rna4007, rna4007 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4007
Unique Name	rna4007
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2111
Alignment location	CM002462.1:613861..615960 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g111.8213.mrna
Orig protein id	gnl\|cribi\|Naga_100001g111.8213
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:613861..615960 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g111	gene3855	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26702.1	cds3997	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4007	rna4007-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:613861..615960-
coding sequence from alignment at CM002462.1:613861..615960-

mRNA sequence

>rna4007 ID=rna4007|Name=rna4007|organism=Nannochloropsis gaditana|type=mRNA|length=2111bp
AAGCTGATCTATTTTACTTTCTGAACAAGCAGGGACAGTAGTTTGAATGA
ATGGCCCTCTCATGCGAAGCCTTGTTTTTTAAATACGCAACATACAGGCT
GGATCTACTGCCTTTTGGGATTTCTTAGGTTGAGGCGAAAAGTGAAAAGG
TGATTGACATTGACTGAAGGGAGACGAACAAACTCCGCACCGGCCACGAC
TATGGCGTCTACAGTCAGAGCGGCTAGCAAGGGAAGTATTGTAACCATGC
GTAAGAAAAGGGAATCGTTGAGTGTGATTCCGAGTAAAGCACCTCCTACT
CAAGAAAGGCTTGACAAGACCCAAGGCATCCAGGATTCGGATTACCGCAT
TCGCAGCGCCACAGCAGGGCCACCAGACGTGATAGTCCGAGATAAGGCAA
CAGGCGCCGTAGCCCTGGATGTCTTCGACTATGAACAGCTTGAAAACGTT
GAATTTCTTGCGTCGGGGGCATTTTCTCATGTCTTTTCGGCTATCTACAA
GGGCAAAAACGTGGTTGTGAAATTGCTACGAGAGCAGTACAAGGAGAGCC
AAGTGACGCTGAAACAAATGCGCTTCGAACAGACACTCCTCAGCCAGTTG
GATCATTCTAATATTGTTGAATTTATCGGTACAGGGGTGTATAATGGTGT
GCCTTTTACCGTGCTGGAGCGGCTCGATGAAACGCTCAATCAGCGCATGG
GGGGCGAGGTGCGCCTTACCATGCTCGAATCCCTAACATATGCAATGGCC
ATCGGGGAGGCGTTAGTCTACCTCCATGATGCGGCCATAACCGGTCACGT
TACCCTTCACCGAGACTTGAAGCCCGACAACCTGGCTTTCGGGGAGTCGG
GCAGTGTCAAACTCATCGATTTTGGCCTGGCTCGCTCAGTGCCCCGGGGG
GCCTCCATCAATGAGGTCTATGAAATGACGGGGGAGACCGGTAGTCTTCG
CTATATGGCGCCCGAGGTTGCCCTCGGTATGCTCTACAATGCCAAGGCAG
ATGTGTACAGTCTCGCTCTCATAACGTGGCAGATGGTGCAAGGAACAAAG
CCATTCCAAGGCATGAGCCGCAAGGACTTCTTCCATCATGTGGTGCACCG
GCATTTCCGGCCCCCAGTCGACCCTAAATGGCCTCCCGCGCTCAGTAGCA
TCATCGTGCAGGCCTGGGATCCCGACCAACTCAAGCGCCCGACAGCCCGG
GAATTCGTGGATGCCCTTGGAAGCATCGTTCGCGGCCTAAGTCGCCATCG
TCGGAACTCCACTGGAACTTCCTCTTCCCTCTCGCGCGTTCGCAACATGT
TCAACATGATCAAGGAACGGGCGGAAGACTATGTTGTGGGCGCTGCAGGA
ACGGTGAATGGTGTGCACCATGACCGGCGCCGGTCCAGCGCCTGTGGTGG
GGCATCGGGGGAGAAAGTGGGTTTCAAGGAAGGCGAAGAGCATAGAGGGC
AAGAGGAACCACAGCAGAAGCCTCAAGAAGAGACACAGCCGCCTTCAGAT
GCCAAGGAAAACCACAAGACCACTACGCTCCCGCCACCAATACCCGAACC
CGAGCGACAACCGGCCGCAGAGCCCTGCCAAGTACTTCAACCCATTCCGC
AAGATGAGGAAGAGCGGAGGGAGATGGTAACCCCGAAGGAGGTGGCGGTT
GGGCCCCCGGATGCGATCGGCAAAATTCCAGGAGAGAACGACACAGGCGG
TCATAAACGGCGAAACAGTCATTAATTTGCGCGATCGTCCTAAACGGCTC
GTCGAGATAAGTAATCCATCAACAAATCCAGTCTCGCATACACCTCATCA
CACCATTTGAGATTTCGGTAGTAGGATTATTACTTCGGGCATCAAAATTC
TTGCTATAGATGAAAAAATCTGAATAGAGGGGACTCTTTCGATTTTATAT
TATATATTCTCGTAGCTTATAGGTCAGAAAATCTCTACTTACATATGCCT
GTCAATGCCTGTGTACAGTCGCCATGTGAAAGAAATAAATAGTCATTCCC
GCAATGAAGGATGAGAAGCTACATCGTATCGAGACGTAGATTTTTATCAT
CTCATGGTGAAAGATTAACAAGAAACGTTCTTTTCCATTGCCGTGAGAGA
CGTTCGCCAGT

protein sequence of rna4007

>rna4007-protein ID=rna4007-protein|Name=rna4007|organism=Nannochloropsis gaditana|type=polypeptide|length=517bp
MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEME
ETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTD
IVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSM
VLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNM
LHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLR
ELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSST
LRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTV
SLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGT
GLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLL
CSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNT
ARERKRGGLLHFWKGHM

mRNA from alignment at CM002462.1:613861..615960-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4007 ID=rna4007|Name=rna4007|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002462.1:613861..615960- (Nannochloropsis gaditana)
ATGTATCTTAACACGATCCTTTCACATTTTCTTCCACTGCCTGGCAGAGA
AATCACTTTCAACGCGGACAAAGACTGCAAGCAGAAAGGTGCTAGTAGGT
AGGAGGTTTCCGAGAATTTCGCAGTACAACTTTGAAACAGGACAGGAACA
GCAAGTCTTTGAAACAGAGATGAGATAGAGATCATGGCGGCTATCAGAAA
ATATCAACTGGTTCTGTGTATTGTCTTTTTTTCATACTTTGTTTGTCGCA
TACTTGCCGTCGAGGAGGCATCGGAAAGGCTTGGGGGGAAAGAAAACTTG
AGAGGCGAAGACCAACATATGCCAGAAATGGAAGAAACGGAGGGTGCGAT
GACGACTTTCGAGTTGTTCAGAGATAGCATGGAGGAATTCAACGAAGACT
TCCAGGAAGGCATCCATTTGGTGAGGGAAAGGGCCTTACAGGTGAAGGAG
CAAGCCTTCAAATTGCAAGAAAAGTTTACCGATATAGTTGACGAGGCCAC
GTTGGACGTTCGCGAGTATTTGGGTCTTGAGAAACCTTACCTCGAGCAGC
TTGAAGATCGGATGCTCAATGTATTACAGAAAACAGCGTTTGCTCGCCAG
GTTATTGTAAAGGGCTGCGTTGGATTGAGCATGGTACTTTATGGCATGCA
CTTTTCTCATTTAGTAGTTTTCATTCACACCTTACGAGTAACTGGGCTTC
CTGTAATGCAGAGAGCATGGAATGAGTTTGTCGACATGTACGGCACCGCA
CGACGGACTATTAAAAGGGAATACCCGAATATGTTGCATACCAAAAAACT
CCTGCAGGCTGTGCACTATGAGATCCAATCAACGCGCAAATTGTTACACG
AGTCCGCTGAAGCTGCCAAGGACGGAAAAGTGACAGAGTCAGAAGCTAGG
GAAGCAGTTCGGAAAGCCAAACTCAATCTACGAGAGCTGAACGAGAAATC
CTGGATCCTCAACCAAGCCTTTTCTTCAATGCACGCTGTGGCAGCTGCAA
TCGACTTTGTAAAGATCAAGGATCTATTTTCTGGAATCTACACTTCGGCT
TTAGCATGTTTTGCAACGGCGTCATCGTCGACATTGCGGGGTCTCTCCAT
AGGCTTTGACCTGGCCTCCTTGATATCCCAGCACATTGACCACGCTGTGC
AGGCTGTGGCAGAGCGCATTCCTCGGTTGGAGGTCCTTCAATACTTGCCT
AGAGAGACACAAAAACTTCTTGGAATGACTGTGTCCTTGGTCTCTGTACT
CAAGGGGCTAATTGTCGTACATTTTGTCGTGCCTCGCCTTACACTGGTCA
TTTCTTCATCGGCCTTGGGTGCCCTTTGGGTTACTGACATGCTAGTGGAC
GTAATGGACGCGGGAGCAGACGGACCTGGCACGGGATTGTTGAATGACAA
ATGCTTATACTTGCTGTCTAATTTCTTTTGGACTGCTGTAGGCTGCATGT
ATCAAAGTCATCGTGAAGGTCAAGATATGCCGCGCCTCATCCAAGTCCTT
CTATTTCCTGCCGTGCGTCTTGAGACTCTTCTATGTTCGCTTGATAATTT
TTTGGGATCCAGCCGAGAGAAAATCGAGTATCTTGTAAAAAAGCATACGC
CTTTTTCGGGTAATGCGATGGAAGCGCAGGAGACAGCGCACACGCCATCA
CTTGCAGTGCAGGAAGCAAAGGAAGGCAACACTGCACGCGAGCGCAAGAG
AGGCGGCCTCCTTCATTTTTGGAAGGGACATATGTGAAACGGGTGGAAAT
GATCCGAAGGAAAGGGTGTATGTGCTGAAAATTGGTTTGGTGGTAGCACC
CATATGTGCACGCATGAATTTATGTACAAGATGTTAATAGAATGTATTCC
ATCCGGTGAAAGGGTGTAAAATCCCACCATGTTTTGCAGTTTGGGGGGAC
GGTGCGATGACTGTGAGACGACTTAAGCGACAAGTAAGCAACTAGTTGTC
GAGGATTATCAGAGGTAGAAGAAGTCAATTGGAAATTATGCCACATATTA
AAAAGCATACCTTTAAAGGGCATATCCTTTTTTGAACATGGTTCACTCAT
GCATGAGGTAAACTTGAACAATGTCTTTTTAAGCAACTCACTGAAACTCT

Coding sequence (CDS) from alignment at CM002462.1:613861..615960-

>rna4007 ID=rna4007|Name=rna4007|organism=Nannochloropsis gaditana|type=CDS|length=1554bp|location=Sequence derived from alignment at CM002462.1:613861..615960- (Nannochloropsis gaditana)
ATGGCGGCTATCAGAAAATATCAACTGGTTCTGTGTATTGTCTTTTTTTC
ATACTTTGTTTGTCGCATACTTGCCGTCGAGGAGGCATCGGAAAGGCTTG
GGGGGAAAGAAAACTTGAGAGGCGAAGACCAACATATGCCAGAAATGGAA
GAAACGGAGGGTGCGATGACGACTTTCGAGTTGTTCAGAGATAGCATGGA
GGAATTCAACGAAGACTTCCAGGAAGGCATCCATTTGGTGAGGGAAAGGG
CCTTACAGGTGAAGGAGCAAGCCTTCAAATTGCAAGAAAAGTTTACCGAT
ATAGTTGACGAGGCCACGTTGGACGTTCGCGAGTATTTGGGTCTTGAGAA
ACCTTACCTCGAGCAGCTTGAAGATCGGATGCTCAATGTATTACAGAAAA
CAGCGTTTGCTCGCCAGGTTATTGTAAAGGGCTGCGTTGGATTGAGCATG
GTACTTTATGGCATGCACTTTTCTCATTTAGTAGTTTTCATTCACACCTT
ACGAGTAACTGGGCTTCCTGTAATGCAGAGAGCATGGAATGAGTTTGTCG
ACATGTACGGCACCGCACGACGGACTATTAAAAGGGAATACCCGAATATG
TTGCATACCAAAAAACTCCTGCAGGCTGTGCACTATGAGATCCAATCAAC
GCGCAAATTGTTACACGAGTCCGCTGAAGCTGCCAAGGACGGAAAAGTGA
CAGAGTCAGAAGCTAGGGAAGCAGTTCGGAAAGCCAAACTCAATCTACGA
GAGCTGAACGAGAAATCCTGGATCCTCAACCAAGCCTTTTCTTCAATGCA
CGCTGTGGCAGCTGCAATCGACTTTGTAAAGATCAAGGATCTATTTTCTG
GAATCTACACTTCGGCTTTAGCATGTTTTGCAACGGCGTCATCGTCGACA
TTGCGGGGTCTCTCCATAGGCTTTGACCTGGCCTCCTTGATATCCCAGCA
CATTGACCACGCTGTGCAGGCTGTGGCAGAGCGCATTCCTCGGTTGGAGG
TCCTTCAATACTTGCCTAGAGAGACACAAAAACTTCTTGGAATGACTGTG
TCCTTGGTCTCTGTACTCAAGGGGCTAATTGTCGTACATTTTGTCGTGCC
TCGCCTTACACTGGTCATTTCTTCATCGGCCTTGGGTGCCCTTTGGGTTA
CTGACATGCTAGTGGACGTAATGGACGCGGGAGCAGACGGACCTGGCACG
GGATTGTTGAATGACAAATGCTTATACTTGCTGTCTAATTTCTTTTGGAC
TGCTGTAGGCTGCATGTATCAAAGTCATCGTGAAGGTCAAGATATGCCGC
GCCTCATCCAAGTCCTTCTATTTCCTGCCGTGCGTCTTGAGACTCTTCTA
TGTTCGCTTGATAATTTTTTGGGATCCAGCCGAGAGAAAATCGAGTATCT
TGTAAAAAAGCATACGCCTTTTTCGGGTAATGCGATGGAAGCGCAGGAGA
CAGCGCACACGCCATCACTTGCAGTGCAGGAAGCAAAGGAAGGCAACACT
GCACGCGAGCGCAAGAGAGGCGGCCTCCTTCATTTTTGGAAGGGACATAT
GTGA

Synonyms

Publications