EWM26702.1, cds3997 (CDS) Nannochloropsis gaditana

Overview
NameEWM26702.1
Unique Namecds3997
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:614224..615777 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26702.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g111.8213.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:614224..615777 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|553194679|ref|XP_005856013.1| (hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >gi|422293049|gb|EKU20350.1| hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >gi|585108790|gb|EWM26702.1| hypothetical protein Naga_100001g111 [Nannochloropsis gaditana])

HSP 1 Score: 1070.84 bits (2768), Expect = 0.000e+0
Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0
Query:    1 MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEMEETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNTARERKRGGLLHFWKGHM 517
            MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEMEETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNTARERKRGGLLHFWKGHM
Sbjct:    1 MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEMEETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNTARERKRGGLLHFWKGHM 517          
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|585108750|gb|EWM26662.1| (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana])

HSP 1 Score: 180.259 bits (456), Expect = 3.406e-47
Identity = 89/251 (35.46%), Postives = 155/251 (61.75%), Query Frame = 0
Query:  142 VKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMD 392
             K   G +M L+G H++   V  HT+RVTG P   +A  E    Y  AR  +K E   ++   +L +AV YE++S   L+ ES +  +DG ++  EA E +R+A+++ + L  ++W LNQA  S+ A+ AAID  ++++   G+YT ALACFA++SS T+  LS+ FDL  +++ ++      +  R    E+ + LP ET++ + ++  ++  ++GL++V+ V+P+++L ISS+ALGA W+TD + ++ D
Sbjct:  150 AKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICD 400          
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|299117435|emb|CBN73938.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 4.687e-10
Identity = 62/256 (24.22%), Postives = 118/256 (46.09%), Query Frame = 0
Query:  147 GLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTR-KLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIP-RLEVLQYLPRETQKLLG------------MTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLV 388
            GLS++ YGM F      +   R+ G+  +QRA  E V  Y +ARR+I RE      T         ++Q+ R +++ E      DG ++E +    ++K +  L ++ E+  +   A SS+ ++ +++   + +  F+G+Y + +ACF  ++  T    ++G  + +L+  H+      + + I  RL++  Y   E    +G            + +   SV+  +  VH   P + L +S    G   VTD +V
Sbjct:   36 GLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGKYASARRSI-REAAEAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVH---PSVALKLSMVYYGGRVVTDYVV 287          
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|298705782|emb|CBJ28951.1| (hypothetical protein Esi_0127_0018 [Ectocarpus siliculosus])

HSP 1 Score: 65.0846 bits (157), Expect = 1.286e-7
Identity = 61/260 (23.46%), Postives = 118/260 (45.38%), Query Frame = 0
Query:  142 VKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIK------REYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIP-RLEVLQYLPRETQKLLGMTVSLVS-VLKGLIVVHFVV-PRLTLVISSSALGALWVTDMLVDVMD 392
            ++G  GLS++ YG  F+ L   I   R++G     ++ +E V  Y  AR+T+       R    ++  K  L A   E+ + +K LH        G+V+  EAR  + K + ++  +  +  +L +  SS+ A+  A+ F K+    + +Y + +     ++      L++      LI + +   +  V + I  ++E+  Y+    +    + ++L   V    +  HF V P+  L I+   LGA  VTD +V  ++
Sbjct:  112 LRGMFGLSLLFYGEDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARQTMTKAAKDVRASAAIIARKDRLVARKEEMMAEKKRLHAI------GRVSAEEARAFIDKYRNDIEIIAREQEVLAETSSSILAIKGALSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYVANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALN 365          
The following BLAST results are available for this feature:
BLAST of EWM26702.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|553194679|ref|XP_005856013.1|0.000e+0100.00hypothetical protein NGA_2076900 [Nannochloropsis ... [more]
gi|585108750|gb|EWM26662.1|3.406e-4735.46hypothetical protein Naga_100001g33 [Nannochlorops... [more]
gi|299117435|emb|CBN73938.1|4.687e-1024.22expressed unknown protein [Ectocarpus siliculosus][more]
gi|298705782|emb|CBJ28951.1|1.286e-723.46hypothetical protein Esi_0127_0018 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4007rna4007Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications