EWM26702.1, cds3997 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|553194679|ref|XP_005856013.1| (hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >gi|422293049|gb|EKU20350.1| hypothetical protein NGA_2076900 [Nannochloropsis gaditana CCMP526] >gi|585108790|gb|EWM26702.1| hypothetical protein Naga_100001g111 [Nannochloropsis gaditana]) HSP 1 Score: 1070.84 bits (2768), Expect = 0.000e+0 Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0
Query: 1 MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEMEETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNTARERKRGGLLHFWKGHM 517
MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEMEETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNTARERKRGGLLHFWKGHM
Sbjct: 1 MAAIRKYQLVLCIVFFSYFVCRILAVEEASERLGGKENLRGEDQHMPEMEETEGAMTTFELFRDSMEEFNEDFQEGIHLVRERALQVKEQAFKLQEKFTDIVDEATLDVREYLGLEKPYLEQLEDRMLNVLQKTAFARQVIVKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMDAGADGPGTGLLNDKCLYLLSNFFWTAVGCMYQSHREGQDMPRLIQVLLFPAVRLETLLCSLDNFLGSSREKIEYLVKKHTPFSGNAMEAQETAHTPSLAVQEAKEGNTARERKRGGLLHFWKGHM 517
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|585108750|gb|EWM26662.1| (hypothetical protein Naga_100001g33 [Nannochloropsis gaditana]) HSP 1 Score: 180.259 bits (456), Expect = 3.406e-47 Identity = 89/251 (35.46%), Postives = 155/251 (61.75%), Query Frame = 0
Query: 142 VKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIPRLEVLQYLPRETQKLLGMTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLVDVMD 392
K G +M L+G H++ V HT+RVTG P +A E Y AR +K E ++ +L +AV YE++S L+ ES + +DG ++ EA E +R+A+++ + L ++W LNQA S+ A+ AAID ++++ G+YT ALACFA++SS T+ LS+ FDL +++ ++ + R E+ + LP ET++ + ++ ++ ++GL++V+ V+P+++L ISS+ALGA W+TD + ++ D
Sbjct: 150 AKALAGGTMCLFGAHYARCAVVFHTMRVTGWPAFHKAVQELFRSYSAAREVVKSEVSKVVRPGELFRAVSYELKSVHFLIKESQKKLEDGYLSRMEAMEIIRRAQIDKKRLEYEAWCLNQALDSVAALGAAIDLTRLREAGKGLYTGALACFASSSSMTVCKLSLAFDLGGILANNLSCVCATLMSRWHSKELARILPPETRRFIKLSFQIMGAIQGLLIVNTVLPKVSLRISSAALGAAWLTDAITEICD 400
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|299117435|emb|CBN73938.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.4034 bits (176), Expect = 4.687e-10 Identity = 62/256 (24.22%), Postives = 118/256 (46.09%), Query Frame = 0
Query: 147 GLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIKREYPNMLHTKKLLQAVHYEIQSTR-KLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIP-RLEVLQYLPRETQKLLG------------MTVSLVSVLKGLIVVHFVVPRLTLVISSSALGALWVTDMLV 388
GLS++ YGM F + R+ G+ +QRA E V Y +ARR+I RE T ++Q+ R +++ E DG ++E + ++K + L ++ E+ + A SS+ ++ +++ + + F+G+Y + +ACF ++ T ++G + +L+ H+ + + I RL++ Y E +G + + SV+ + VH P + L +S G VTD +V
Sbjct: 36 GLSLLFYGMAFRTFAFHVIVFRIAGMKQVQRAVRELVGKYASARRSI-REAAEAAETVGERVVKGDDLQAARERMIEEKKRLLSDGFLSERDTTYFMKKYRAELLKIKEEQELFQSARSSVLSLRSSVGPRQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVH---PSVALKLSMVYYGGRVVTDYVV 287
BLAST of EWM26702.1 vs. NCBI_GenBank
Match: gi|298705782|emb|CBJ28951.1| (hypothetical protein Esi_0127_0018 [Ectocarpus siliculosus]) HSP 1 Score: 65.0846 bits (157), Expect = 1.286e-7 Identity = 61/260 (23.46%), Postives = 118/260 (45.38%), Query Frame = 0
Query: 142 VKGCVGLSMVLYGMHFSHLVVFIHTLRVTGLPVMQRAWNEFVDMYGTARRTIK------REYPNMLHTKKLLQAVHYEIQSTRKLLHESAEAAKDGKVTESEAREAVRKAKLNLRELNEKSWILNQAFSSMHAVAAAIDFVKIKDLFSGIYTSALACFATASSSTLRGLSIGFDLASLISQHIDHAVQAVAERIP-RLEVLQYLPRETQKLLGMTVSLVS-VLKGLIVVHFVV-PRLTLVISSSALGALWVTDMLVDVMD 392
++G GLS++ YG F+ L I R++G ++ +E V Y AR+T+ R ++ K L A E+ + +K LH G+V+ EAR + K + ++ + + +L + SS+ A+ A+ F K+ + +Y + + ++ L++ LI + + + V + I ++E+ Y+ + + ++L V + HF V P+ L I+ LGA VTD +V ++
Sbjct: 112 LRGMFGLSLLFYGEDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARQTMTKAAKDVRASAAIIARKDRLVARKEEMMAEKKRLHAI------GRVSAEEARAFIDKYRNDIEIIAREQEVLAETSSSILAIKGALSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYVANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALN 365 The following BLAST results are available for this feature:
BLAST of EWM26702.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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