rna4003, rna4003 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4003
Unique Name	rna4003
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2578
Alignment location	CM002462.1:606441..607361 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g115.8276.mrna
Orig protein id	gnl\|cribi\|Naga_100001g115.8276
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:606441..607361 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g115	gene3851	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4003	rna4003-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26765.1	cds3993	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:606441..607361+
coding sequence from alignment at CM002462.1:606441..607361+

mRNA sequence

>rna4003 ID=rna4003|Name=rna4003|organism=Nannochloropsis gaditana|type=mRNA|length=2578bp
GCGAGGCCATGGGCCCTAATTGAAGTTCTCAAACACTCACGTGCCAACAA
AACTCATAGAGCAGTGTTCATTGCAGGGGATTCCATTATTTGGTTCGCGC
TGACCATCTTTGCCTGGGTGGCTCGGTGGTGGCTGGAAGAGGAAGGAGTC
TGGTGGCGGCCTTGAGCTCCGCGACCAGTATGTCGAGAAGGCTGCTAGGA
AATCAGCAGTACCACCTACGCCGCTTCAAGGGGTTTACCAGGCCAATCTA
CTCCGCTGCATACATAACCATCATGATGCTCTTTTACCGCTTCTCTGGTG
CTTTCATAAATAAGGTTCCTATATGCACCACTAAGCTGAAGAATAGGCCC
GCTGCTCTGTGTACCGCAGCCTTCACGGCTTTGGGTGCGGGAGGCCGGAA
AAGCGGCGAGGTGCAAGAGCCTTACTTCGGTTTCAGGCCCGATGAGGAAG
ACGTCTCCGTTTCGCGGCATGTGATAAATTGGTATCCAGGCCACATTGCA
AAGGCCGAAAGGGAACTGCAAGACTTTTTGAAGCTCGTGGACGTGGTAGT
TGAGGCTCGCGATGCCCGAATTCCCACAGCCACCACCCACCCCCTAGTCC
GGCAGTGGGTTGGTCGGCGCCCCTTGATCGTCGCGATGACGCGCAAGGAT
ATGGCACCATCCGCCGCCATAAAGGAGTGGAGCGATTTTTATGTACAATC
CGCGCGTGCAGCGCACCGCATAGGCCAGCCTCGAGTACCCGTCGTTTTCG
TGGACTCCAGGCAGGGCACAGATATCCACCGGCTCAAGATGATAGCTCTG
AAGGCAGGTGCGGCTGTGAACGAGCGCCGAGCTCGTTTGGGGTTGCTGCC
GCGAAGCATTCGAGTGGCGGTGATCGGATACCCCAATGTAGGAAAATCAG
CCATCATCAACAAGTTGATAGGCCGCCGGCTGGCCAAGTCCAAGAATATG
CCGGGCGTGACGAAGCGCATCTCCTGGGTCCGGCTGGGGGCGGCAGCGAT
GGGCTCGAGCCGGAAGGAGGAGGAGCTAGAGCTTCTGGATTCGCCTGGCA
TCATTCCTGCCAAGCAGGTTGATCAAGCCACGGCCTTCAAGCTCGCCGTG
TGCAACGACATCGGGCAAGCCTCCTACGACGTCCAGGTCGTGGCCGGTGA
GCTCATCAATATGCTACGCCGCGTGCATGCACGGCGTCCGGGCTATGTGG
ATCTCAGACGCCTGGAGCAGCGTTATCAACTGGATCCATGCACCTTGTCG
GGAGAGGAGTACCTGCATGCCCTGGCAGCCAAGCTCTATCGCGGCAACCT
GTATTCGGCCGCCGACCGCCTTATGAGCGATTTCCGTAAGGGCCACTTCG
GACCTGTGACGCTCGAGATTCCGCCGGAGATGGTTGACTTAGAGGAGAAC
AAATGGGCGATGGCCGGCGAGGAGATACGTGAGGAAAAGCGCCGAGAAAA
AGAACGCCGACGCGAGTTAATAGAGAGAATGGATCGAAAGGAAATTCTAC
CAATAGAAGCGGCGCCTCGAGAGCGGGACACGGAGAGCAATATAGAAGAG
AAGCAGGGTTCGGAACGGGAAAGTCGGCAGCAAAGGCCTGGTGAGGGGGA
AAGTCCCAAGGTCGGAGTGGGGCAGTTTGAAGGCTGGTAAAAAGCGACCT
CCCTTGCCCGCGCAGAAGTAAAATTGTGCATAGGTCGTAGCCCAAACTTT
AGTCATTTGCTTATTTCGATGTTAAAATGGTTTTCCATTAAGTATACGAT
AATTTTCACATGCCCTTAGCGCCAGAGGTCCCTGGAAGAGTACGAGGCGT
TTTCTGTTTTTTTTCTAGACAGCGCCTGCCGGATAGTTCCTCACCTCGTG
CTCTTTGTTGAGCTGATCGGACTTTTTGTCAGGCCGATTAGTTTGGTGAG
TATTCTCATCAATTTTCGGGGGTAAAACTTTCTCCTTTCTCCTGCGTACA
CTGAGTGATCGTCCGTTGCCCGCGAATGTGGCGGCTGCTGAGCCCGCTTT
GTCCTGTGGAGTGATGGGAAGGAAGACCTTGAACTCTGCAGGCAGCTCTT
CCTCACTGTAAAGTCGATCAGAAAAGTAGATTCGACGGAGGCGACAGTTT
GCATGGATTTGAACACGAAGGGTCTCAACGTAATTCGTGCCGTAAGCGCG
GCGTGTGAAGTCCGCAAGGTTGAATTGAATTTGGTTCCATCCCTCATCTA
GGCGCATAGGCATTACGCATATAAAAGGTTTTACGCGTGTACATGACTGA
AAGGTGGAAGCACGAAAGCGGCGACGCACGTTCTTGTCGTCCAGAATGGT
CACTTCAAAGGTGAAATACTTATTCAACTGATGATGTACATTTACAAAAA
GGAGGTGAAAGATAAGTTATTTTCTTTGCTGTACTTGCCATAGTAAACAC
AGAAAATGTATATATGATAAGAGAATGAAGGAAGACCTGGGGACTATCAT
CGAAATGACAGAGCTCTCCTGTAGAGGGCGTATATTCCAGCACAAGACAA
CACACACAGATAGAATACTGTTATACAGATCACGCGTTTGGTAGTATAAA
TTGGTGAAACTTTGCCTTTTTGAAGGAA

protein sequence of rna4003

>rna4003-protein ID=rna4003-protein|Name=rna4003|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MSRSDEKGNVNANAAGTQTNITEGKRIAYTISVAADGPYKDGAAVLAHAI
RKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGT
YMRKNSAKNGCCDALELIKLHACLLDGYHLLSIWTWTLRFRNLWTHCSIF
RT

mRNA from alignment at CM002462.1:606441..607361+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4003 ID=rna4003|Name=rna4003|organism=Nannochloropsis gaditana|type=mRNA|length=921bp|location=Sequence derived from alignment at CM002462.1:606441..607361+ (Nannochloropsis gaditana)
ATGAGCAGAAGTGACGAAAAGGGAAACGTCAATGCCAACGGTGCAAGCAT
ATATGAAGCGTAAAGCTCTGCCAAAGCTCCTGAGATACGCTTTTGGTTTT
GATGTCATTACTCATTGTGCCTTTTCATATGCCTTTACTATACTATATCC
GAAAGAAGTAGTGATATAGGTTACGCACATGAGTCGAGCAGAAAAGTTGT
GAACTTTAGCGGCAGGGACGCAAACCAATATCACAGAGGGCAAAAGAATC
GCTTATACGATTTCCGTGGCGGCGGATGGACCATACAAGGACGGAGCAGC
CGTTTTAGCCCATGCTATTCGCAAGGCGGTGAAAGACTCTCATTACAGCA
TGGAGCTCATCGCCATGGTGCATCCGAGTGTTACGACCACCCATGCGTCC
TTAACATATGCCAGCTGGAAGTGAGTATCCGAATACGCATATTTGCTAGA
CCTACGTGTTGTCTCTCGCATGTGATTTTATCATGGGCGAGGTGTTTGTA
TGCCATATCTACGCCTGGAGTCTCCAGAATTCATATTGCGTGACTGTAGA
CTCATTGGACTGATCAtgtttcccccttccttttcgttCGTTCATTGATG
AATCGCGGCAGACATCTGGACCGAGACGTCCCGTTGGATGTGAAGAAGAT
AAAGGGCACCTACATGAGAAAGAACAGCGCTAAGAATGGATGTTGCGATG
CTTTGGAGCTCATCAAGCTACATGCCTGTCTACTGGATGGATACCATTTA
TTGTCCATTTGGACATGGACTCTTAGATTTCGAAATCTCTGGACGCATTG
TTCGATTTTCCGGGTAAGGACTACATTTACACTCTTGACAACCCCATGAT
GATGTCCAACTCTAAGGAATGTCTGGTGCAGAGTGGATATTTCATGCTGC
TATCTCACCGAACAGACTTAA

Coding sequence (CDS) from alignment at CM002462.1:606441..607361+

>rna4003 ID=rna4003|Name=rna4003|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at CM002462.1:606441..607361+ (Nannochloropsis gaditana)
ATGAGCAGAAGTGACGAAAAGGGAAACGTCAATGCCAACGCGGCAGGGAC
GCAAACCAATATCACAGAGGGCAAAAGAATCGCTTATACGATTTCCGTGG
CGGCGGATGGACCATACAAGGACGGAGCAGCCGTTTTAGCCCATGCTATT
CGCAAGGCGGTGAAAGACTCTCATTACAGCATGGAGCTCATCGCCATGGT
GCATCCGAGTGTTACGACCACCCATGCGTCCTTAACATATGCCAGCTGGA
AACATCTGGACCGAGACGTCCCGTTGGATGTGAAGAAGATAAAGGGCACC
TACATGAGAAAGAACAGCGCTAAGAATGGATGTTGCGATGCTTTGGAGCT
CATCAAGCTACATGCCTGTCTACTGGATGGATACCATTTATTGTCCATTT
GGACATGGACTCTTAGATTTCGAAATCTCTGGACGCATTGTTCGATTTTC
CGGACTTAAATGAGCAGAAGTGACGAAAAGGGAAACGTCAATGCCAACGC
GGCAGGGACGCAAACCAATATCACAGAGGGCAAAAGAATCGCTTATACGA
TTTCCGTGGCGGCGGATGGACCATACAAGGACGGAGCAGCCGTTTTAGCC
CATGCTATTCGCAAGGCGGTGAAAGACTCTCATTACAGCATGGAGCTCAT
CGCCATGGTGCATCCGAGTGTTACGACCACCCATGCGTCCTTAACATATG
CCAGCTGGAAACATCTGGACCGAGACGTCCCGTTGGATGTGAAGAAGATA
AAGGGCACCTACATGAGAAAGAACAGCGCTAAGAATGGATGTTGCGATGC
TTTGGAGCTCATCAAGCTACATGCCTGTCTACTGGATGGATACCATTTAT
TGTCCATTTGGACATGGACTCTTAGATTTCGAAATCTCTGGACGCATTGT
TCGATTTTCCGGACTTAAATGAGCAGAAGTGACGAAAAGGGAAACGTCAA
TGCCAACGCGGCAGGGACGCAAACCAATATCACAGAGGGCAAAAGAATCG
CTTATACGATTTCCGTGGCGGCGGATGGACCATACAAGGACGGAGCAGCC
GTTTTAGCCCATGCTATTCGCAAGGCGGTGAAAGACTCTCATTACAGCAT
GGAGCTCATCGCCATGGTGCATCCGAGTGTTACGACCACCCATGCGTCCT
TAACATATGCCAGCTGGAAACATCTGGACCGAGACGTCCCGTTGGATGTG
AAGAAGATAAAGGGCACCTACATGAGAAAGAACAGCGCTAAGAATGGATG
TTGCGATGCTTTGGAGCTCATCAAGCTACATGCCTGTCTACTGGATGGAT
ACCATTTATTGTCCATTTGGACATGGACTCTTAGATTTCGAAATCTCTGG
ACGCATTGTTCGATTTTCCGGACTTAAATGAGCAGAAGTGACGAAAAGGG
AAACGTCAATGCCAACGCGGCAGGGACGCAAACCAATATCACAGAGGGCA
AAAGAATCGCTTATACGATTTCCGTGGCGGCGGATGGACCATACAAGGAC
GGAGCAGCCGTTTTAGCCCATGCTATTCGCAAGGCGGTGAAAGACTCTCA
TTACAGCATGGAGCTCATCGCCATGGTGCATCCGAGTGTTACGACCACCC
ATGCGTCCTTAACATATGCCAGCTGGAAACATCTGGACCGAGACGTCCCG
TTGGATGTGAAGAAGATAAAGGGCACCTACATGAGAAAGAACAGCGCTAA
GAATGGATGTTGCGATGCTTTGGAGCTCATCAAGCTACATGCCTGTCTAC
TGGATGGATACCATTTATTGTCCATTTGGACATGGACTCTTAGATTTCGA
AATCTCTGGACGCATTGTTCGATTTTCCGGACTTAA

Synonyms

Publications