EWM26765.1, cds3993 (CDS) Nannochloropsis gaditana

Overview
NameEWM26765.1
Unique Namecds3993
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:606441..606480 +
Alignment locationCM002462.1:606650..606860 +
Alignment locationCM002462.1:607052..607253 +
Alignment locationCM002462.1:607356..607361 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26765.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g115.8276.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:606441..606480 +
CM002462.1supercontigCM002462.1:606650..606860 +
CM002462.1supercontigCM002462.1:607052..607253 +
CM002462.1supercontigCM002462.1:607356..607361 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
Homology
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|585108853|gb|EWM26765.1| (hypothetical protein Naga_100001g115 [Nannochloropsis gaditana])

HSP 1 Score: 316.62 bits (810), Expect = 1.980e-109
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0
Query:    1 MSRSDEKGNVNANAAGTQTNITEGKRIAYTISVAADGPYKDGAAVLAHAIRKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYHLLSIWTWTLRFRNLWTHCSIFRT 152
            MSRSDEKGNVNANAAGTQTNITEGKRIAYTISVAADGPYKDGAAVLAHAIRKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYHLLSIWTWTLRFRNLWTHCSIFRT
Sbjct:    1 MSRSDEKGNVNANAAGTQTNITEGKRIAYTISVAADGPYKDGAAVLAHAIRKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYHLLSIWTWTLRFRNLWTHCSIFRT 152          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|585109698|gb|EWM27444.1| (Glycosyl transferase, family 8, partial [Nannochloropsis gaditana])

HSP 1 Score: 83.9593 bits (206), Expect = 8.985e-17
Identity = 36/73 (49.32%), Postives = 56/73 (76.71%), Query Frame = 0
Query:   57 SHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYH 129
            S Y ++ IA+VHP+VTT+ A+L  + WK ++RD+P+D+  I+GT++R++ AK+GCC A EL+KL+A  L  YH
Sbjct:    3 SKYGVDFIAIVHPNVTTSRAALRRSGWKVIERDIPVDITDIQGTFLREHIAKSGCCGATELLKLYAWTLTDYH 75          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|551535057|ref|XP_005756354.1| (hypothetical protein EMIHUDRAFT_221729 [Emiliania huxleyi CCMP1516] >gi|485603193|gb|EOD03925.1| hypothetical protein EMIHUDRAFT_221729 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 80.8777 bits (198), Expect = 3.235e-15
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 0
Query:   17 TQTNITEGKRIAYTISVAADGPYKDGAAVLAHAIRKA----------------------VKDSHYSMELIAMVHPSVT-TTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYHLLSIWTWTL 138
            TQ       ++A+ I++  DGPY DGAAVL H+IR A                      ++   Y   L+A+ HP+V+  T A+L    ++ L+R  P+ + +I+G+++R+   ++GCC A EL+KL             W W+L
Sbjct:    4 TQPGRRAPLQMAFVITLTMDGPYIDGAAVLGHSIRTAHSHFAKDGEPSPARAEAGEEGTLQPPTYVSSLVALTHPTVSNATRAALALVGFRVLERPTPVAIPEIRGSFLRQRIVRSGCCGATELMKL-------------WAWSL 135          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|219125352|ref|XP_002182947.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405741|gb|EEC45683.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.781 bits (164), Expect = 1.845e-10
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = 0
Query:   10 VNANAAGTQTNITEGKRIAYTISVAADG--PYKDGAAVLAHAI--RKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYHL 130
            ++A  +   T +T    IAY ISV   G  P  +G AVL H+I          Y+  L A+ HPS  +    L    ++ L+R+V ++V  IKG ++R    +NGCC   ELIKL A  L  Y +
Sbjct:   31 IDAFKSNNSTPVT----IAYAISVTGCGSDPITEGGAVLKHSIHLNSIHGAGRYNYALFAIYHPSAVSCALPLKALGYELLEREVFVNVADIKGDFLRNKIEQNGCCGEKELIKLEAYTLTDYPI 151          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|298711578|emb|CBJ32639.1| (Putative zinc-protease albF [Ectocarpus siliculosus])

HSP 1 Score: 67.0106 bits (162), Expect = 2.088e-10
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0
Query:   41 DGAAVLAHAIRKAVKDSHYSMELIAMVHPSVTTT-HASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYH 129
            D A VL  +IR A K S Y  E +A   PSV+      L    W+ +++D+P+ V+ I+    RK+  K+GCC A E IKLHA  L  YH
Sbjct:   92 DSAEVLIQSIRAACKLSRYRCEALAFTLPSVSQEGRQHLEGMGWRVVEKDLPVAVEDIENETYRKHVVKSGCCGANEFIKLHAYTLTQYH 181          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|397634553|gb|EJK71475.1| (hypothetical protein THAOC_07077, partial [Thalassiosira oceanica])

HSP 1 Score: 66.2402 bits (160), Expect = 4.706e-10
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 0
Query:   42 GAAVLAHAIRKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLL 125
            GA VL H+I+ A + S Y  E+ A VHPS     ASL    +K L R+ P +   IKG ++R++     CC   E IKL+A  L
Sbjct:   85 GAVVLRHSIKLAHESSRYGFEMYAFVHPSARECSASLNKVGYKSLIRNTPFEGDDIKGKFLREHVDGASCCGRKEYIKLYAYTL 168          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|551548787|ref|XP_005762036.1| (hypothetical protein EMIHUDRAFT_96850 [Emiliania huxleyi CCMP1516] >gi|485610914|gb|EOD09607.1| hypothetical protein EMIHUDRAFT_96850 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.855 bits (159), Expect = 1.055e-9
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 0
Query:   27 IAYTISVAADGPYKDGAAVLAHAIRKAVKDSHYS---------------MELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGY-HLLSIWTWTLRFRNL 143
            +A+ I +  DGPY DGAAVLA A+  + +  + S                EL+A+V  +VT +   L +  ++ L+R +P+ V  I   ++R   A  GCC A EL+KL A  L  Y  +L +   +L  RNL
Sbjct:   66 VAFAIVLTKDGPYLDGAAVLAEAVMGSWRGPNSSSSGAPGGAASQPAVDYELVAIVARNVTASRPVLRFLGYRVLERPLPVAVADIAPGFLRDRIAARGCCGADELLKLWAYSLAEYSRVLLLDMDSLVLRNL 198          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|1210530617|dbj|GAX10568.1| (hypothetical protein FisN_14Lh067 [Fistulifera solaris])

HSP 1 Score: 64.6994 bits (156), Expect = 2.417e-9
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   27 IAYTISVAADG---------PYKDGAAVLAHAIRKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLL 125
            +AY +++   G         P  +GAAVL H+I++    ++Y+ ++ A+ HP       +L    ++ L+R+V + V+ I+G ++R +  KNGCC   EL+KL A  L
Sbjct:  102 VAYVVTITGCGTPMRDEEPFPITEGAAVLQHSIQRQ-SSTNYNYQMYALYHPDAYACAQTLQPYGYRLLERNVLVSVEDIQGEFLRTHITKNGCCGEKELLKLEAYTL 208          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|299470207|emb|CBN79511.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.5438 bits (153), Expect = 6.104e-9
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 0
Query:   25 KRIAYTISVAADGPYKDGAAVLAHAIRKAVKDSHYSMELIAMVHPSVT-TTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYH 129
            K +A+ IS+  +G + DGAAVLA +I  A + S +  +L+A +H  +   T   L    ++ +   +PL + +I+    R   AK GCC   EL+KL A  L  YH
Sbjct:   61 KAVAFAISLTREGNHLDGAAVLAASIDAACETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPLSLDEIEDPVTRGRIAKGGCCGLAELMKLFAYTLTEYH 166          
BLAST of EWM26765.1 vs. NCBI_GenBank
Match: gi|397621694|gb|EJK66418.1| (hypothetical protein THAOC_12669 [Thalassiosira oceanica])

HSP 1 Score: 62.3882 bits (150), Expect = 1.441e-8
Identity = 40/133 (30.08%), Postives = 66/133 (49.62%), Query Frame = 0
Query:   11 NANAAGTQTNITEGKRIAYTISVAADGPYK-------DGAAVLAHAI-----RKAVKDSHYSMELIAMVHPSVTTTHASLTYASWKHLDRDVPLDVKKIKGTYMRKNSAKNGCCDALELIKLHACLLDGYHLL 131
            +A   G Q N T   +IAY IS+     ++       D A VL H++     R     S Y  +L A+VH +       L+   +  L +D P+ + +I+G Y+RK+  K  CC A E +KL+A  ++G+ ++
Sbjct:   63 DAAGVGDQGNGTRPIQIAYAISLIRCSDFQSSTSGLLDAATVLRHSVHTQSVRNPASGSKYDYKLYAIVHTNAADCSNILSDLGYHVLMKDSPIQISEIRGDYLRKHVHKEWCCGADEFVKLYAYTIEGHPIV 195          
The following BLAST results are available for this feature:
BLAST of EWM26765.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108853|gb|EWM26765.1|1.980e-109100.00hypothetical protein Naga_100001g115 [Nannochlorop... [more]
gi|585109698|gb|EWM27444.1|8.985e-1749.32Glycosyl transferase, family 8, partial [Nannochlo... [more]
gi|551535057|ref|XP_005756354.1|3.235e-1530.34hypothetical protein EMIHUDRAFT_221729 [Emiliania ... [more]
gi|219125352|ref|XP_002182947.1|1.845e-1035.20predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298711578|emb|CBJ32639.1|2.088e-1041.11Putative zinc-protease albF [Ectocarpus siliculosu... [more]
gi|397634553|gb|EJK71475.1|4.706e-1040.48hypothetical protein THAOC_07077, partial [Thalass... [more]
gi|551548787|ref|XP_005762036.1|1.055e-933.83hypothetical protein EMIHUDRAFT_96850 [Emiliania h... [more]
gi|1210530617|dbj|GAX10568.1|2.417e-931.48hypothetical protein FisN_14Lh067 [Fistulifera sol... [more]
gi|299470207|emb|CBN79511.1|6.104e-934.91conserved unknown protein [Ectocarpus siliculosus][more]
gi|397621694|gb|EJK66418.1|1.441e-830.08hypothetical protein THAOC_12669 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4003rna4003Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications