rna4002, rna4002 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4002
Unique Name	rna4002
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	912
Alignment location	CM002462.1:603288..605969 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosome biogenesis gtp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100001g116.8163.mrna
Orig protein id	gnl\|cribi\|Naga_100001g116.8163
Gene	PYlqF
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:603288..605969 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PYlqF	gene3850	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4002	rna4002-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26652.1	cds3992	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:603288..605969-
coding sequence from alignment at CM002462.1:603288..605969-

mRNA sequence

>rna4002 ID=rna4002|Name=rna4002|organism=Nannochloropsis gaditana|type=mRNA|length=912bp
ATGGGGAACGCTACCTCGGCTTCGGCAGCTGGTGAAAATGCCGGAGAATT
TGCAGGAGACGAAGGTCTGCAGAACTGCGGCTACCGTGTACTTGGTGTTC
AGGCTGGGTCCCCTGCAGCTGCTGCGGGCCTCGTTTCCTTCTTTGATTTT
ATCGTCATGGCAAATCACCTTCCACTACGTCAAGTCGACTATACATTCAT
AGATTTAATCCGAGAATTTGAAGATCGTCCATTGGAACTCAAGATATACA
ATTCAAAGAGCCAAACTGTGCGAGATCTGGTTTTGACGCCGAGCAAAAAT
TGGGACGGCCAGGGAATGCTAGGCGTGACAATACGTTTCGATTACTACGA
TCAGTCAGAGGAGCACCTTGTCCGCGTCCTAGAGGTGGTCCCCGACTCCC
CGGCCGAGCTGGCGGGTCTCCAACCCATGACCGACTTCCTGCTCGGGACC
GCCGAAACCGTCTTCAAGGACCCGGACGTGCTCGAGGAGGTGTTGGGCAG
GAACCTGGAGCAGACAATCGACTTCTACGTGTACAACACGGAGACGGACA
CCGTGCGCACGGCCACGCTGATGCCTAACTTGAAGTGGGGCGGACGGGGC
TGCCTGGGTGCGGAGATCGGGCACGGCTACCTGCACGGTTTGCCCCAGAA
GAGCTGTCGTTCCAACGGGACCTCGGTCTTTAAGGTCCCTGCGCCGCACA
TCGCGGACGCCACGCGGGCGAGCGAAGCCGTGGGGGACATGGCTGATGAA
GCCACAGGGGGCGGTGGTGGAGGTCGATTTGCAAGAGATACGGCACGGAA
GCGCACCGCCCGCCCACTTCCTTCAACCTCCAGCGTCAGAGCACGAGGGG
TAGACCATGTGATGAGTAGCTCCGCTGCGAGATGGGCGGGAATTGTAATG
GAAAAGGAGTAA

protein sequence of rna4002

>rna4002-protein ID=rna4002-protein|Name=rna4002|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MSRRLLGNQQYHLRRFKGFTRPIYSAAYITIMMLFYRFSGAFINKVPICT
TKLKNRPAALCTAAFTALGAGGRKSGEVQEPYFGFRPDEEDVSVSRHVIN
WYPGHIAKAERELQDFLKLVDVVVEARDARIPTATTHPLVRQWVGRRPLI
VAMTRKDMAPSAAIKEWSDFYVQSARAAHRIGQPRVPVVFVDSRQGTDIH
RLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRR
LAKSKNMPGVTKRISWVRLGAAAMGSSRKEEELELLDSPGIIPAKQVDQA
TAFKLAVCNDIGQASYDVQVVAGELINMLRRVHARRPGYVDLRRLEQRYQ
LDPCTLSGEEYLHALAAKLYRGNLYSAADRLMSDFRKGHFGPVTLEIPPE
MVDLEENKWAMAGEEIREEKRREKERRRELIERMDRKEILPIEAAPRERD
TESNIEEKQGSERESRQQRPGEGESPKVGVGQFEGW

mRNA from alignment at CM002462.1:603288..605969-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4002 ID=rna4002|Name=rna4002|organism=Nannochloropsis gaditana|type=mRNA|length=2682bp|location=Sequence derived from alignment at CM002462.1:603288..605969- (Nannochloropsis gaditana)
GCGAGGCCATGGGCCCTAATTGAAGTTCTCAAACACTCACGTGCCAACAA
AACTCATAGAGCAGTGTTCATTGCAGGGGATTCCATTATTTGGTTCGCGC
TGACCATCTTTGCCTGGGTGGCTCGGTGGTGGCTGGAAGAGGAAGGAGTC
TGGTGGCGGCCTTGAGCTCCGCGACCAGTATGTCGAGAAGGCTGCTAGGA
AATCAGCAGTACCACCTACGCCGCTTCAAGGGGTTTACCAGGCCAATCTA
CTCCGCTGCATACATAACCATCATGATGCTCTTTTACCGCTTCTCTGGTG
CTTTCATAAATAAGGTCAGTAGGTTGTTGGGGCGGAGTATCCGTCGGTAG
CCACGCCTTGCTTATCCCTTAAAATGCATTTAGAAACCATATCTCCTTGT
TGAATTCACGCCCACCAGGTTCCTATATGCACCACTAAGCTGAAGAATAG
GCCCGCTGCTCTGTGTACCGCAGCCTTCACGGCTTTGGGTGCGGGAGGCC
GGAAAAGCGGCGAGGTGCAAGAGCCTTACTTCGGTTTCAGGCCCGATGAG
GAAGACGTCTCCGTTTCGCGGCATGTGATAAATTGGTATCCAGGCCACAT
TGCAAAGGCCGAAAGGGAACTGCAAGACTTTTTGAAGCTCGTGGACGTGG
TAGTTGAGGCTCGCGATGCCCGAATTCCCACAGCCACCACCCACCCCCTA
GTCCGGCAGTGGGTTGGTCGGCGCCCCTTGATCGTCGCGATGACGCGCAA
GGATATGGCACCATCCGCCGCCATAAAGGAGTGGAGCGATTTTTATGTAC
AATCCGCGCGTGCAGCGCACCGCATAGGCCAGCCTCGAGTACCCGTCGTT
TTCGTGGACTCCAGGCAGGGCACAGATATCCACCGGCTCAAGATGATAGC
TCTGAAGGCAGGTGCGGCTGTGAACGAGCGCCGAGCTCGTTTGGGGTTGC
TGCCGCGAAGCATTCGAGTGGCGGTGATCGGATACCCCAATGTAGGAAAA
TCAGCCATCATCAACAAGTTGATAGGCCGCCGGCTGGCCAAGTCCAAGAA
TATGCCGGGCGTGACGAAGCGCATCTCCTGGGTCCGGCTGGGGGCGGCAG
CGATGGGCTCGAGCCGGAAGGAGGAGGAGCTAGAGCTTCTGGATTCGCCT
GGCATCATTCCTGCCAAGCAGGTTGATCAAGCCACGGCCTTCAAGCTCGC
CGTGTGCAACGACATCGGGCAAGCCTCCTACGACGTCCAGGTCGTGGCCG
GTGAGCTCATCAATATGCTACGCCGCGTGCATGCACGGCGTCCGGGCTAT
GTGGATCTCAGACGCCTGGAGCAGCGTTATCAACTGGATCCATGCACCTT
GTCGGGAGAGGAGTACCTGCATGCCCTGGCAGCCAAGCTCTATCGCGGCA
ACCTGTATTCGGCCGCCGACCGCCTTATGAGCGATTTCCGTAAGGGCCAC
TTCGGACCTGTGACGCTCGAGATTCCGCCGGAGATGGTTGACTTAGAGGA
GAACAAATGGGCGATGGCCGGCGAGGAGATACGTGAGGAAAAGCGCCGAG
AAAAAGAACGCCGACGCGAGTTAATAGAGAGAATGGATCGAAAGGAAATT
CTACCAATAGAAGCGGCGCCTCGAGAGCGGGACACGGAGAGCAATATAGA
AGAGAAGCAGGGTTCGGAACGGGAAAGTCGGCAGCAAAGGCCTGGTGAGG
GGGAAAGTCCCAAGGTCGGAGTGGGGCAGTTTGAAGGCTGGTAAAAAGCG
ACCTCCCTTGCCCGCGCAGAAGTAAAATTGTGCATAGGTCGTAGCCCAAA
CTTTAGTCATTTGCTTATTTCGATGTTAAAATGGTTTTCCATTAAGTATA
CGATAATTTTCACATGCCCTTAGCGCCAGAGGTCCCTGGAAGAGTACGAG
GCGTTTTCTGTTTTTTTTCTAGACAGCGCCTGCCGGATAGTTCCTCACCT
CGTGCTCTTTGTTGAGCTGATCGGACTTTTTGTCAGGCCGATTAGTTTGG
TGAGTATTCTCATCAATTTTCGGGGGTAAAACTTTCTCCTTTCTCCTGCG
TACACTGAGTGATCGTCCGTTGCCCGCGAATGTGGCGGCTGCTGAGCCCG
CTTTGTCCTGTGGAGTGATGGGAAGGAAGACCTTGAACTCTGCAGGCAGC
TCTTCCTCACTGTAAAGTCGATCAGAAAAGTAGATTCGACGGAGGCGACA
GTTTGCATGGATTTGAACACGAAGGGTCTCAACGTAATTCGTGCCGTAAG
CGCGGCGTGTGAAGTCCGCAAGGTTGAATTGAATTTGGTTCCATCCCTCA
TCTAGGCGCATAGGCATTACGCATATAAAAGGTTTTACGCGTGTACATGA
CTGAAAGGTGGAAGCACGAAAGCGGCGACGCACGTTCTTGTCGTCCAGAA
TGGTCACTTCAAAGGTGAAATACTTATTCAACTGATGATGTACATTTACA
AAAAGGAGGTGAAAGATAAGTTATTTTCTTTGCTGTACTTGCCATAGTAA
ACACAGAAAATGTATATATGATAAGAGAATGAAGGAAGACCTGGGGACTA
TCATCGAAATGACAGAGCTCTCCTGTAGAGGGCGTATATTCCAGCACAAG
ACAACACACACAGATAGAATACTGTTATACAGATCACGCGTTTGGTAGTA
TAAATTGGTGAAACTTTGCCTTTTTGAAGGAA

Coding sequence (CDS) from alignment at CM002462.1:603288..605969-

>rna4002 ID=rna4002|Name=rna4002|organism=Nannochloropsis gaditana|type=CDS|length=2922bp|location=Sequence derived from alignment at CM002462.1:603288..605969- (Nannochloropsis gaditana)
GTTCCTATATGCACCACTAAGCTGAAGAATAGGCCCGCTGCTCTGTGTAC
CGCAGCCTTCACGGCTTTGGGTGCGGGAGGCCGGAAAAGCGGCGAGGTGC
AAGAGCCTTACTTCGGTTTCAGGCCCGATGAGGAAGACGTCTCCGTTTCG
CGGCATGTGATAAATTGGTATCCAGGCCACATTGCAAAGGCCGAAAGGGA
ACTGCAAGACTTTTTGAAGCTCGTGGACGTGGTAGTTGAGGCTCGCGATG
CCCGAATTCCCACAGCCACCACCCACCCCCTAGTCCGGCAGTGGGTTGGT
CGGCGCCCCTTGATCGTCGCGATGACGCGCAAGGATATGGCACCATCCGC
CGCCATAAAGGAGTGGAGCGATTTTTATGTACAATCCGCGCGTGCAGCGC
ACCGCATAGGCCAGCCTCGAGTACCCGTCGTTTTCGTGGACTCCAGGCAG
GGCACAGATATCCACCGGCTCAAGATGATAGCTCTGAAGGCAGGTGCGGC
TGTGAACGAGCGCCGAGCTCGTTTGGGGTTGCTGCCGCGAAGCATTCGAG
TGGCGGTGATCGGATACCCCAATGTAGGAAAATCAGCCATCATCAACAAG
TTGATAGGCCGCCGGCTGGCCAAGTCCAAGAATATGCCGGGCGTGACGAA
GCGCATCTCCTGGGTCCGGCTGGGGGCGGCAGCGATGGGCTCGAGCCGGA
AGGAGGAGGAGCTAGAGCTTCTGGATTCGCCTGGCATCATTCCTGCCAAG
CAGGTTGATCAAGCCACGGCCTTCAAGCTCGCCGTGTGCAACGACATCGG
GCAAGCCTCCTACGACGTCCAGGTCGTGGCCGGTGAGCTCATCAATATGC
TACGCCGCGTGCATGCACGGCGTCCGGGCTATGTGGATCTCAGACGCCTG
GAGCAGCGTTATCAACTGGATCCATGCACCTTGTCGGGAGAGGAGTACCT
GCATGCCCTGGCAGCCAAGCTCTATCGCGGCAACCTGTATTCGGCCGCCG
ACCGCCTTATGAGCGATTTCCGTAAGGGCCACTTCGGACCTGTGACGCTC
GAGATTCCGCCGGAGATGGTTGACTTAGAGGAGAACAAATGGGCGATGGC
CGGCGAGGAGATACGTGAGGAAAAGCGCCGAGAAAAAGAACGCCGACGCG
AGTTAATAGAGAGAATGGATCGAAAGGAAATTCTACCAATAGAAGCGGCG
CCTCGAGAGCGGGACACGGAGAGCAATATAGAAGAGAAGCAGGGTTCGGA
ACGGGAAAGTCGGCAGCAAAGGCCTGGTGAGGGGGAAAGTCCCAAGGTCG
GAGTGGGGCAGTTTGAAGGCTGGTAAATGTCGAGAAGGCTGCTAGGAAAT
CAGCAGTACCACCTACGCCGCTTCAAGGGGTTTACCAGGCCAATCTACTC
CGCTGCATACATAACCATCATGATGCTCTTTTACCGCTTCTCTGGTGCTT
TCATAAATAAGGTTCCTATATGCACCACTAAGCTGAAGAATAGGCCCGCT
GCTCTGTGTACCGCAGCCTTCACGGCTTTGGGTGCGGGAGGCCGGAAAAG
CGGCGAGGTGCAAGAGCCTTACTTCGGTTTCAGGCCCGATGAGGAAGACG
TCTCCGTTTCGCGGCATGTGATAAATTGGTATCCAGGCCACATTGCAAAG
GCCGAAAGGGAACTGCAAGACTTTTTGAAGCTCGTGGACGTGGTAGTTGA
GGCTCGCGATGCCCGAATTCCCACAGCCACCACCCACCCCCTAGTCCGGC
AGTGGGTTGGTCGGCGCCCCTTGATCGTCGCGATGACGCGCAAGGATATG
GCACCATCCGCCGCCATAAAGGAGTGGAGCGATTTTTATGTACAATCCGC
GCGTGCAGCGCACCGCATAGGCCAGCCTCGAGTACCCGTCGTTTTCGTGG
ACTCCAGGCAGGGCACAGATATCCACCGGCTCAAGATGATAGCTCTGAAG
GCAGGTGCGGCTGTGAACGAGCGCCGAGCTCGTTTGGGGTTGCTGCCGCG
AAGCATTCGAGTGGCGGTGATCGGATACCCCAATGTAGGAAAATCAGCCA
TCATCAACAAGTTGATAGGCCGCCGGCTGGCCAAGTCCAAGAATATGCCG
GGCGTGACGAAGCGCATCTCCTGGGTCCGGCTGGGGGCGGCAGCGATGGG
CTCGAGCCGGAAGGAGGAGGAGCTAGAGCTTCTGGATTCGCCTGGCATCA
TTCCTGCCAAGCAGGTTGATCAAGCCACGGCCTTCAAGCTCGCCGTGTGC
AACGACATCGGGCAAGCCTCCTACGACGTCCAGGTCGTGGCCGGTGAGCT
CATCAATATGCTACGCCGCGTGCATGCACGGCGTCCGGGCTATGTGGATC
TCAGACGCCTGGAGCAGCGTTATCAACTGGATCCATGCACCTTGTCGGGA
GAGGAGTACCTGCATGCCCTGGCAGCCAAGCTCTATCGCGGCAACCTGTA
TTCGGCCGCCGACCGCCTTATGAGCGATTTCCGTAAGGGCCACTTCGGAC
CTGTGACGCTCGAGATTCCGCCGGAGATGGTTGACTTAGAGGAGAACAAA
TGGGCGATGGCCGGCGAGGAGATACGTGAGGAAAAGCGCCGAGAAAAAGA
ACGCCGACGCGAGTTAATAGAGAGAATGGATCGAAAGGAAATTCTACCAA
TAGAAGCGGCGCCTCGAGAGCGGGACACGGAGAGCAATATAGAAGAGAAG
CAGGGTTCGGAACGGGAAAGTCGGCAGCAAAGGCCTGGTGAGGGGGAAAG
TCCCAAGGTCGGAGTGGGGCAGTTTGAAGGCTGGTAAATGTCGAGAAGGC
TGCTAGGAAATCAGCAGTACCACCTACGCCGCTTCAAGGGGTTTACCAGG
CCAATCTACTCCGCTGCATACATAACCATCATGATGCTCTTTTACCGCTT
CTCTGGTGCTTTCATAAATAAG

Synonyms

Publications