rna4000, rna4000 (mRNA) Nannochloropsis gaditana

Overview
Namerna4000
Unique Namerna4000
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1352
Alignment locationCM002462.1:599450..601216 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g118.8210.mrna
Orig protein idgnl|cribi|Naga_100001g118.8210
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:599450..601216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g118gene3848Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4000rna4000-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26699.1cds3990Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4000 ID=rna4000|Name=rna4000|organism=Nannochloropsis gaditana|type=mRNA|length=1352bp
TACCACCCTTTTAATTGATTTTGGAGGCCGGACCGGGGCTTAGATATGCC
GGTCTATTACTCCTTTGACCCTTTCTTGTTTCTAGGCAGCAATTGGACGC
GCAGTGCGCGCTTGCGTGTGGCTTGGGGGGACGCACGCTGTGCGATATTC
TTCCTGTTCCTGAGGCTTCTTCGTTCGCCAGATTGGTTTTGGAATCACCT
GTCCACGCGCACGCAAGTCTTGGCGCTTAGTAACGCATCAAGACGTTTGA
ATATCTCAAGTCCGGGTTTATCTTTCAAGGATGAATGCAGAATACGATTA
TCTTTTCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAGTCGTGCC
TTCTGTTGCGATTTGCGGACGATACTTACACGGAAAGTTACATCTCCACG
ATCGGTGTCGACTTTAAAATTCGTACAATTGAATTGGAAGGCAAGACCAT
TAAACTGCAAATCTGGGACACGGCGGGACAGGAGCGATTCCGCACGATCA
CATCCTCGTACTACAGAGGAGCCCACGGCATCATCGTCGTATACGACGTG
ACTGACCAGGAGTCTTTCAACAATGTCAAGCAATGGCTGCACGAGATCAA
CCGATACGCCTCTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCG
ACTTGGAGCCGAAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCG
GACTCGCTGGGCATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAA
TGTGGAGAAAGCTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGATGA
AGACCCAGCCGGTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCC
ACAGCCGTCGGGGGCCCTGGCGCGTCCTCTGGCTGCTGTTAACAATTGCA
AGGTGTGGAATGTGGGGACAGGAGAGAAAGAATGAGGTGCATGTCACTCG
TCGGGGAATGGCTTCTGGAAGAGAGGGGATAATCCTGCCGCAGAGACATA
CCTGCCGTTCGGGACCCCTTTGGTTTTGTGTTCCGACAAAGTTCTCCGCG
TGGTGATGCTGGGTTGCATGGGGAGTTCAGAAAGGTTCTCGCAACCGGCA
CAGTTTCCTGAGGGGCACGTACACTTGTAAAAAGAGCTGAGGCACAATTC
AGATGGCATGAACGGAAGAATTACGCTTGGAGGAAGGTGTGGAATGTGAG
AAGGGAGAACGGCTTGTCTAGGTAGCGAAGAAATATCAGAGCGCATGCTT
CTTGGCCCCAGGCCGGCGTCGAAGGGTAACGGGACGTGGTGGAAATTGAA
AACTAGGTCATGAAAAATAAAAAAAGGAAAAAAAGACACTGTCTACTTTA
TC
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protein sequence of rna4000

>rna4000-protein ID=rna4000-protein|Name=rna4000|organism=Nannochloropsis gaditana|type=polypeptide|length=368bp
MDFSSLLESLRVSPVLALALFVLLLLIASVQLSTRVTHFYPSTLELCSLY
GKLLVSPLYKTWRWKSKLRRDMRLDPNLAFKLPFAADPMNVQQYVQMCGL
QGKVEAEDLPFAYVASSFLYPTVCLLSQRRYLFPVLGGIHVHNYFRWEPL
KMQQKYEGLLKVQETVKFTRKGAEVTFPQVLLNEQGREVWRSTTTVLVPC
RNPPQDPSTSIGAEAVPTKRMSLVDECRSQGLKVVLVRERAFKTAADTGR
RFAAVVKDYNPIHLFTWSARLFGFRRAICHGMYVGALALEEALDAWRAEG
GEATTVMEADVKFIRPCFVGNGFVVKIWRVEDKAAEAGKRLVVMVAQQGK
EDTVHMQATVQAAREERQ
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mRNA from alignment at CM002462.1:599450..601216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4000 ID=rna4000|Name=rna4000|organism=Nannochloropsis gaditana|type=mRNA|length=1767bp|location=Sequence derived from alignment at CM002462.1:599450..601216+ (Nannochloropsis gaditana)
CGACCTCAGCCTGGCGACAGACATCTCACCCCCGCTCCCCCATCCTTGTA
CGCTTAGATTTTGAACatcgggaggggagcagcGGGAGCAGGGAATACGC
GTCCTTGTCGTTGCGGTCGCGCCGTCTCCCCTGTTGATGGATTTCTCATC
CCTGCTGGAAAGCCTAAGGGTCTCCCCGGTGCTggccctcgcccttttcg
tcttgctcctcctcatcgcaaGCGTCCAGCTGAGCACGAGGGTCACACAC
TTCTATCCCTCTACATTGGAACTGTGCAGCCTGTACGGCAAGCTCCTGGT
ATCCCCGTTGTACAAGACTTGGCGATGGAAGAGCAAGCTTCGGCGGGACA
TGCGGCTGGACCCAAATCTGGCATTTAAATTGCCTTTCGCGGCAGATCCC
ATGAACGTTCAACAGTATGTGCAAATGTGTGGATTGCAGGGTaaagtgga
ggcggaggatttACCGTTCGCGTACGTGGCTTCTTCATTCCTTTATCCCA
CGGTTTGTCTGCTAAGCCAGCGCCGCTACCTCTTCCCCGTGCTTGGCGGT
ATCCACGTTCACAATTATTTTCGATGGGAACCTTTGAAGATGCAGCAGAA
ATATGAAGGCCTTCTAAAAGTTCAAGAGACGGTCAAATTtacaaggaagg
gggcggaggtgacATTTCCTCAGGTTTTGCTGAACGAGCAGGGGCGCGAG
GTCTGGCGGTCCACAACGACAGTCTTGGTTCCCTGCCGCAACCCACCTCA
GgacccctccacctccattgGCGCTGAGGCGGTGCCGACTAAACGCATGA
GTCTGGTTGACGAGTGCCGGAGTCAAGGACTCAAGGTGGTGTTGGTCCGG
GAGCGGGCCTTCAAGACAGCAGCCGACACGGGCCGGCGCTTTGCAGCGGT
GGTCAAAGACTACAACCCCATTCACCTGTTCACGTGGAGTGCCAGGCTTT
TTGGCTTCCGGAGAGCAATCTGCCACGGCATGTATGTGGGGGCTctggcc
ctggaggaggccctggacgcGTGGCgagcagaggggggggaggcgacgac
CGTCATGGAGGCGGACGTCAAGTTCATCCGGCCCTGCTTTGTGGGAAATG
GCTTCGTCGTGAAGATTTGGAGggtggaagacaaggccgccgaggcgggg
aagaggctggtggtgatggtcgcgcagcaaggaaaggaggacaccGTGCA
CATGCAGGCCACCGTCCAAGCGGCCCGGGAAGAGAGACAGTaagaggggc
gggtgccAGGGTCCGTCAAATCGTAACGCGTCAAAGAAAGTATCACCAGC
CGCGTACAAGCCCCGTGAGACTCGCGGCAACGAGGTAAAAGAGGTGAGCA
GGCTTCTCTTGGAaagcctcgccctcggctCCTTGGCTTGAGGAGGCCTG
ACGTGCTTGAAGGAAACCTTTCTTTACTCCTTTTCCATTACAATTCCCGC
CCATCTCGCAGCGGAGCTACTCATCACATGGTCTACCCCTCGTGCTCTGA
CGCTGGAGGTTGAAGGAAGTGGGCGGGCGGTGCGCTTCCGTGCCGTATCT
CTTGCAAAtcgacctccaccaccttcaccgCGCCGGCATCTGAATCCTGT
CCCCCCTCGCGTCCCAccgaccctttcctcccctcgccgccccccgcccc
gccggcaAGCCTGCATTCTCCCTGCTCCCACGCGTGCATCCCATCACGGT
CTCCGCCATCCGTACCGCCCCCTGTGGCTTCATCAGCCATGTCCCCCACG
GCTTCGCTCGCCCGCGT
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Coding sequence (CDS) from alignment at CM002462.1:599450..601216+

>rna4000 ID=rna4000|Name=rna4000|organism=Nannochloropsis gaditana|type=CDS|length=1107bp|location=Sequence derived from alignment at CM002462.1:599450..601216+ (Nannochloropsis gaditana)
ATGGATTTCTCATCCCTGCTGGAAAGCCTAAGGGTCTCCCCGGTGCTggc
cctcgcccttttcgtcttgctcctcctcatcgcaaGCGTCCAGCTGAGCA
CGAGGGTCACACACTTCTATCCCTCTACATTGGAACTGTGCAGCCTGTAC
GGCAAGCTCCTGGTATCCCCGTTGTACAAGACTTGGCGATGGAAGAGCAA
GCTTCGGCGGGACATGCGGCTGGACCCAAATCTGGCATTTAAATTGCCTT
TCGCGGCAGATCCCATGAACGTTCAACAGTATGTGCAAATGTGTGGATTG
CAGGGTaaagtggaggcggaggatttACCGTTCGCGTACGTGGCTTCTTC
ATTCCTTTATCCCACGGTTTGTCTGCTAAGCCAGCGCCGCTACCTCTTCC
CCGTGCTTGGCGGTATCCACGTTCACAATTATTTTCGATGGGAACCTTTG
AAGATGCAGCAGAAATATGAAGGCCTTCTAAAAGTTCAAGAGACGGTCAA
ATTtacaaggaagggggcggaggtgacATTTCCTCAGGTTTTGCTGAACG
AGCAGGGGCGCGAGGTCTGGCGGTCCACAACGACAGTCTTGGTTCCCTGC
CGCAACCCACCTCAGgacccctccacctccattgGCGCTGAGGCGGTGCC
GACTAAACGCATGAGTCTGGTTGACGAGTGCCGGAGTCAAGGACTCAAGG
TGGTGTTGGTCCGGGAGCGGGCCTTCAAGACAGCAGCCGACACGGGCCGG
CGCTTTGCAGCGGTGGTCAAAGACTACAACCCCATTCACCTGTTCACGTG
GAGTGCCAGGCTTTTTGGCTTCCGGAGAGCAATCTGCCACGGCATGTATG
TGGGGGCTctggccctggaggaggccctggacgcGTGGCgagcagagggg
ggggaggcgacgacCGTCATGGAGGCGGACGTCAAGTTCATCCGGCCCTG
CTTTGTGGGAAATGGCTTCGTCGTGAAGATTTGGAGggtggaagacaagg
ccgccgaggcggggaagaggctggtggtgatggtcgcgcagcaaggaaag
gaggacaccGTGCACATGCAGGCCACCGTCCAAGCGGCCCGGGAAGAGAG
ACAGTaa
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Synonyms
Publications