rna3984, rna3984 (mRNA) Nannochloropsis gaditana

Overview
Namerna3984
Unique Namerna3984
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2052
Alignment locationCM002462.1:559356..561808 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g136.8095.mrna
Orig protein idgnl|cribi|Naga_100001g136.8095
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:559356..561808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g136gene3832Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3984rna3984-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26584.1cds3974Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3984 ID=rna3984|Name=rna3984|organism=Nannochloropsis gaditana|type=mRNA|length=2052bp
ATGAACCCGCGTCTTCCAGGCGGACTCGACACCCCTTTAGCCGACATGTG
GCGTTCTGCGCCCATTGGAGAGCTACCACCGTACTTGCCACAAGACAACG
GGTGCCGTCTGGAGGCAGGCCTCCTGAAAATGCAAGCCAGAGCTCTGCAG
ACTCTCCTCAAGATGAAGTTCCCTGCTTTCGCGAGCCACATTCTCTACAA
TACCCAGTTGGAAAGTTTCCTTGACACGTATTTGAACTACGCCCCCCGGC
CCTACGAGGCGGCTATCGACCGTCGGATCGGGACATCGGACAGGTTCGAA
AGCTCTTTGCAGGGCGTCGAGGCTGTCCGTACTGCCCTGCACCGGTCGGT
CTTGCTCGCCTACCTCCGATTTTTTACGAGCCACGAAGAGCAGCAGCAAG
TCCCGTCTTTCGCGACACTTGCCAGTCAGTCTCACGTCATGGACATTCCC
CGGGCGTTGGACCTCTGCAACCTGTACGGCTTCACGGACGCAGGTCTGCT
GGCTCGCCTCCTCTTGGGTGCCATTGCATTCGTGGAGAGCGGCCTACTCT
CGCAACTCGAAGACGCCTGCCGCTCTGTCAGCGAGATATTCTCTGACCTA
GAGGGAGCTGTCGCGTCGGGAAGCGGTGATGGAGAGACTCAGGACGCCTT
AGAGTATCTCACCGACGTGACGGGAGGCCTGAGCCGGCTGGTCCTCGCCG
TGCCCCTGACTTCCTTGGGACTGGCATCGACTCCCCGTCTCTTCGGGGGA
TTGGGGCGGATTTACGACGTGCTGATAGCGCGATTCGAGGCCGAGGGAGA
GACCAGGGGCTGCAGTTCTAATGGAGAGAGGGCATGTAAGTACGCAGGCT
TCGCGTGTGGGTGCGCGAGGGCTCTCGTTGGGGGCGTGGTGGCCGGCCTC
CTCGCGCTGGCTCGCACGCGCGAGGGGGCTCTCGAGGCTCTTTTCACCTT
TATCAGCGAGCTTATTCAGACGACCGACGCAGACGAGGAGGCGGACGAGG
GAGGACAGGGAATGGGTCGGCTCGTCCGGGACTGCGCGGGCGGGCTTCTG
AGCCGCTTGCAGGCCTTCCTGTCGGCGCCTGCCGATGAGCAACGTCCGGC
TCCCGACATGTCTGGCGTATCGTACCTAATAGAGCTTCTGAGGAGCACCA
CGGGTGGATATGAGGCCCCTACACCGCGGACAGGACTCTTCATCAAAGAG
CCCCGGGCCGGACGCGGGGCGGAAGGGGAACGGCGAGTCCAGCGGCCGGC
CCGGAGCGTGGAGGCGATGGTCCAGGAAGTGAGGCAGGTCTGTCCGGGAC
TGGGAGAGGGATTCGTTCATGCCTGCCTCGCCGTTATGGGCTACAACATA
AACATGGTGGTGAACGCCCTGTTGGAGGGAAGTGCCTTGCCCTACCCGCT
CGACACCCTGGACCGATCGCTGCCCTCTCCCCTCGGCGCGGATAAGCTCC
GGAAGAAAGGAGGAGAGGAGGCGGAGGAGGCCCGCGACGAGGAATTCATC
GCCCGGCAGAAAGCGTACCTTCGTCAGATGGAGAAGGACGCCGAGGAAGA
CGCATATCTGTTGCAAGAGTACGACGACGATTTCGATGACCAATATTCAG
GGGAACAGACAATGTTTTCTCGCGATAACACTCGAGAGGATTTCGAGGCG
ATTAGAAAATATAACAATCTAATGAGAAAGGAAGAGGAAGAGGAACATTT
CTGGGAAGGAATGCAACTCAAGCAGCCCGAATTGCCTACAATCGCAAGGG
ACAGTGAGGACGACGACAAGGATTCGAGGGGGAGGACAAAAGAGCCTAAA
TCGAGCTCCCAGACAGTATTGTCTGGTTCTGGTTCTTTCTTCATAAATGC
TAGAGAAAAATCGAGAGTTAGAGGTACTAGCGGATCGCTTTTAAGTAGAG
GAGAAAGCGCTGCGCAAGGAAGAGGTGAAGATGGCGCCACCAGTCATCCC
ATGAGCGCGCTCGCGAGACGGAGGAAGGAAAAACAAAAACACTTGCGTGC
AAACCATAACCGCAAGGTTAAGGCAGTGCGTAAATCAGGAGTTAATCTCT
GA
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protein sequence of rna3984

>rna3984-protein ID=rna3984-protein|Name=rna3984|organism=Nannochloropsis gaditana|type=polypeptide|length=799bp
MSEVHVPDTGDLPGLDSLLDVILGPTLAELYGADIALLERIECKLGMVLD
RHHPEKVEAFNEMVSMTKSPMIKEKNLQVFVKSIMTALVEDASRPPPPAS
APTKAKASATRRVIGGNNKRRSAAGKAGGGGGAPGKRVKRASAAASKSSP
ADSDVSSLDEISRSSSSDDGDAGRNKKSVTIRKPVVAIESYDSVMADSDW
QMRGQLHLVERCPALVYSSWRDADHDVYLYQFPQLAAAKREAKGIIAFFM
GFGLYKEFTAAAFKSIVMPGDQPSRLRSREDIFAFLEKGSQLRSTAKGGS
GEGARRKAYVATWQFFQKNVFKEAVTEADPFPPLARRVPNKGKKRASTSS
SMPKKPRPRAPSAPVPPLPPASLPVAVPAPSPPPPSTSALSPPPPSSLGM
TSTGEAKSKDEAGVTVTSSEGAPSPLGEVAQDGAVATAGGVWNTMPDPED
RSIRGLFASLRWRLLRLEETWEGGDQFVWTLKSSQSNIDNLCDSLFGDAG
DPEADDWRRMVSSSLDKARRKLEDKLRALGGQGGNAATGKPAYVHGRALL
DVYSELKEAVAGFEEGKEAEVEGWDSLDFPVRGLTFAPTTVAATSAASVS
EPGAVLPSAEGAEPAVAGKEDSPEGAEEENREHGEENGGTREFGGGDRAR
EVGDVHGSGEESPPAGVAPEQSEEGKNVRPEQSGKEEDVGKERLEPISAK
LPGGLLEEGPALPSVSKAAAADSDPLLKACVDSENGPSQGGSPLSSRDSN
SKASPGGKPEGDGGQFQFVEREELAPRDLRKCTFAKRTKWLQRNHVIKD
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mRNA from alignment at CM002462.1:559356..561808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3984 ID=rna3984|Name=rna3984|organism=Nannochloropsis gaditana|type=mRNA|length=2453bp|location=Sequence derived from alignment at CM002462.1:559356..561808+ (Nannochloropsis gaditana)
ATGTCAGAAGTGCACGTGCCAGATACGGGGGATCTTCCTGGACTGGACAG TCTCTTAGACGTGATTCTCGGACCCACCCTGGCCGAACTCTACGGCGCCG ACATAGCCCTCCTCGAGCGCATCGAGTGCAAGCTGGGAATGGTATTGGAC AGACATCATCCAGAGAAGGTGGAAGCTTTCAATGAGATGGTGAGTATGAC AAAGTCACCAATGATCAAGGAGAAAAATTTGCAGGTGTTCGTAAAGAGCA TCATGACGGCTCTAGTCGAGGACGCGTCacggccaccccctccgGCGTCA GCTCCGACCAAAGCCAAGGCTAGCGCCACCAGAAGAGTCATTGGAGGCAA TAATAAGCGCAGAAGCGCGGCAGGTAAagcaggaggtggcggcggggcaC CGGGGAAACGCGTGAAAAGGGCGTCCGCGGCAGCATCGAAGTCCTCCCCA GCAGATAGTGATGTGTCCTCGCTGGATGAGATCAGCAGATCCAGCTCCTC AGACGATGGAGACGCGGGCAGGAATAAGAAAAGTGTGACTATACGCAAAC CAGTCGTAGCAATAGAGAGCTACGACTCGGTTATGGCCGACTCGGACTGG CAGATGCGCGGGCAGCTCCATTTGGTGGAGCGCTGCCCCGCCTTAGTCTA CAGCTCCTGGCGCGACGCTGATCATGACGTCTATCTCTACCAGTTTCCTC AGCTGGCCGCCGCGAAACGTGAGGCTAAAGGCATTATCGCCTTCTTCATG GGTTTCGGACTTTACAAAGAATTCACCGCCGCAGCTTTCAAGAGCATAGT CATGCCGGGAGATCAGCCCTCACGCCTCCGGTCGCGGGAGGATATCTTTG CATTCCTGGAGAAAGGCTCACAGCTGCGCTCTACCGctaagggaggaagt ggggaaGGTGCCCGGCGCAAAGCGTACGTAGCTACGTGGCAGTTTTTCCA AAAAAATGTTTTCAAGGAGGCGGTCACCGAGGCCgacccctttcctccct tggcgCGCCGCGTGCCCAAtaagggaaagaagcgggcgtctacctcctcc tcgatgcccAAAAAGCCGCGCCCCCGCGCCCCTTCGGCGCCCGTACCTCC GCTCCCCCCGGCGTCCCTGCCTGTTGctgtccctgccccctcccctcccc ccccctccacgagCGCActgtcgcctccccccccttcctctctagGCATG ACAAGCACAGGCGAAGCGAAGAgcaaggacgaggcgggcgtTACGGTCAC GTCATCGGAGGgagccccctccccgctgGGAGAGGTGGCTCAGGACGGGG CAGTAGCGACGGCCGGGGGAGTGTGGAACACGATGCCAGACCCGGAGGAC CGCTCCATCCGCGGGCTCTTCGCATCATTGCGCTGGCGCCTGCTCCGACT AGAGGAGACctgggagggtggggacCAGTTTGTTTGGACGCTCAAGAGCT CGCAGAGCAACATCGACAACTTATGCGACAGCCTCTTTGGGGACGcaggc gacccggaggcggACGATTGGCGACGGATGGTAAGCAGCAGCCTAGACAA GGCGCGCAGGAAGCTGGAGGACAAGCTGCGGGCCTtgggaggccaggggg ggaatgCCGCTACTGGGAAGCCCGCCTATGTGCATGGGCGGGCGCTTTTA GACGTGTACTCGGAGCtgaaagaggcggtggcgggattcgaggaagggaa ggaggccgaggTCGAGGGCTGGGACAGCCTGGACTTTCCCGTGCGTGGAC TCACGTTTGCGCCGACTACTGTAGCAGCCACCTCGGCGGCGTCAGTCTCA GAGCCGGGTGCCGTGTTGCCGAGCGCGGAGGGCGCGGAGCCTGCGGTGGC GGGCAAGGAAGACAgcccggagggggcggaagaggaaaacaGGGAacatg gggaggagaatggagGAACGAGAGAGTTCGGAGGTGGAGACAGGGCGCGT GAGGTGGGAGACGTACACGGTAGTGGAGAGGAGTCGCCGCCTGCGGGTGT GGCCCCCGAgcagagcgaggaagggaaaaatgTGAGGCCCGAGCagagcg ggaaggaagaggatgtaGGCAAGGAGAGGTTGGAGCCCATTTCCGCGAAG CTCCCGGGAGGGCTGCTAGAAGAAGGGCCGGCCCTGCCTTCCGTCTCGAA AGCTGCAGCAGCGGACTCCGATCCCCTCCTGAAAGCTTGCGTCGACTCCG AGAACGGGCCGTCCCAGGGCGGAagccccctttcttcccgtgATTCTAAT TCGAAAGCATCCCCGTAAGGACAACTAGAAAAGTGTGAACCGAGCGCCGA CTAAaatggcagggaagggggggaaagccggagggagatggaggacagTT CCAGTTTGTCGAGAGGGAAGAGCTGGCTCCGAGAGACCTGAGAAAATGCA CATTTGCTAAACGTACCAAGTGGTTGCAAAGAAATCATGTCATTAAAGAC TAA
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Coding sequence (CDS) from alignment at CM002462.1:559356..561808+

>rna3984 ID=rna3984|Name=rna3984|organism=Nannochloropsis gaditana|type=CDS|length=4800bp|location=Sequence derived from alignment at CM002462.1:559356..561808+ (Nannochloropsis gaditana)
ATGTCAGAAGTGCACGTGCCAGATACGGGGGATCTTCCTGGACTGGACAG
TCTCTTAGACGTGATTCTCGGACCCACCCTGGCCGAACTCTACGGCGCCG
ACATAGCCCTCCTCGAGCGCATCGAGTGCAAGCTGGGAATGGTATTGGAC
AGACATCATCCAGAGAAGGTGGAAGCTTTCAATGAGATGGTGAGTATGAC
AAAGTCACCAATGATCAAGGAGAAAAATTTGCAGGTGTTCGTAAAGAGCA
TCATGACGGCTCTAGTCGAGGACGCGTCacggccaccccctccgGCGTCA
GCTCCGACCAAAGCCAAGGCTAGCGCCACCAGAAGAGTCATTGGAGGCAA
TAATAAGCGCAGAAGCGCGGCAGGTAAagcaggaggtggcggcggggcaC
CGGGGAAACGCGTGAAAAGGGCGTCCGCGGCAGCATCGAAGTCCTCCCCA
GCAGATAGTGATGTGTCCTCGCTGGATGAGATCAGCAGATCCAGCTCCTC
AGACGATGGAGACGCGGGCAGGAATAAGAAAAGTGTGACTATACGCAAAC
CAGTCGTAGCAATAGAGAGCTACGACTCGGTTATGGCCGACTCGGACTGG
CAGATGCGCGGGCAGCTCCATTTGGTGGAGCGCTGCCCCGCCTTAGTCTA
CAGCTCCTGGCGCGACGCTGATCATGACGTCTATCTCTACCAGTTTCCTC
AGCTGGCCGCCGCGAAACGTGAGGCTAAAGGCATTATCGCCTTCTTCATG
GGTTTCGGACTTTACAAAGAATTCACCGCCGCAGCTTTCAAGAGCATAGT
CATGCCGGGAGATCAGCCCTCACGCCTCCGGTCGCGGGAGGATATCTTTG
CATTCCTGGAGAAAGGCTCACAGCTGCGCTCTACCGctaagggaggaagt
ggggaaGGTGCCCGGCGCAAAGCGTACGTAGCTACGTGGCAGTTTTTCCA
AAAAAATGTTTTCAAGGAGGCGGTCACCGAGGCCgacccctttcctccct
tggcgCGCCGCGTGCCCAAtaagggaaagaagcgggcgtctacctcctcc
tcgatgcccAAAAAGCCGCGCCCCCGCGCCCCTTCGGCGCCCGTACCTCC
GCTCCCCCCGGCGTCCCTGCCTGTTGctgtccctgccccctcccctcccc
ccccctccacgagCGCActgtcgcctccccccccttcctctctagGCATG
ACAAGCACAGGCGAAGCGAAGAgcaaggacgaggcgggcgtTACGGTCAC
GTCATCGGAGGgagccccctccccgctgGGAGAGGTGGCTCAGGACGGGG
CAGTAGCGACGGCCGGGGGAGTGTGGAACACGATGCCAGACCCGGAGGAC
CGCTCCATCCGCGGGCTCTTCGCATCATTGCGCTGGCGCCTGCTCCGACT
AGAGGAGACctgggagggtggggacCAGTTTGTTTGGACGCTCAAGAGCT
CGCAGAGCAACATCGACAACTTATGCGACAGCCTCTTTGGGGACGcaggc
gacccggaggcggACGATTGGCGACGGATGGTAAGCAGCAGCCTAGACAA
GGCGCGCAGGAAGCTGGAGGACAAGCTGCGGGCCTtgggaggccaggggg
ggaatgCCGCTACTGGGAAGCCCGCCTATGTGCATGGGCGGGCGCTTTTA
GACGTGTACTCGGAGCtgaaagaggcggtggcgggattcgaggaagggaa
ggaggccgaggTCGAGGGCTGGGACAGCCTGGACTTTCCCGTGCGTGGAC
TCACGTTTGCGCCGACTACTGTAGCAGCCACCTCGGCGGCGTCAGTCTCA
GAGCCGGGTGCCGTGTTGCCGAGCGCGGAGGGCGCGGAGCCTGCGGTGGC
GGGCAAGGAAGACAgcccggagggggcggaagaggaaaacaGGGAacatg
gggaggagaatggagGAACGAGAGAGTTCGGAGGTGGAGACAGGGCGCGT
GAGGTGGGAGACGTACACGGTAGTGGAGAGGAGTCGCCGCCTGCGGGTGT
GGCCCCCGAgcagagcgaggaagggaaaaatgTGAGGCCCGAGCagagcg
ggaaggaagaggatgtaGGCAAGGAGAGGTTGGAGCCCATTTCCGCGAAG
CTCCCGGGAGGGCTGCTAGAAGAAGGGCCGGCCCTGCCTTCCGTCTCGAA
AGCTGCAGCAGCGGACTCCGATCCCCTCCTGAAAGCTTGCGTCGACTCCG
AGAACGGGCCGTCCCAGGGCGGAagccccctttcttcccgtgATTCTAAT
TCGAAAGCATCCCCggggggaaagccggagggagatggaggacagTTCCA
GTTTGTCGAGAGGGAAGAGCTGGCTCCGAGAGACCTGAGAAAATGCACAT
TTGCTAAACGTACCAAGTGGTTGCAAAGAAATCATGTCATTAAAGACTAA
ATGTCAGAAGTGCACGTGCCAGATACGGGGGATCTTCCTGGACTGGACAG
TCTCTTAGACGTGATTCTCGGACCCACCCTGGCCGAACTCTACGGCGCCG
ACATAGCCCTCCTCGAGCGCATCGAGTGCAAGCTGGGAATGGTATTGGAC
AGACATCATCCAGAGAAGGTGGAAGCTTTCAATGAGATGGTGAGTATGAC
AAAGTCACCAATGATCAAGGAGAAAAATTTGCAGGTGTTCGTAAAGAGCA
TCATGACGGCTCTAGTCGAGGACGCGTCacggccaccccctccgGCGTCA
GCTCCGACCAAAGCCAAGGCTAGCGCCACCAGAAGAGTCATTGGAGGCAA
TAATAAGCGCAGAAGCGCGGCAGGTAAagcaggaggtggcggcggggcaC
CGGGGAAACGCGTGAAAAGGGCGTCCGCGGCAGCATCGAAGTCCTCCCCA
GCAGATAGTGATGTGTCCTCGCTGGATGAGATCAGCAGATCCAGCTCCTC
AGACGATGGAGACGCGGGCAGGAATAAGAAAAGTGTGACTATACGCAAAC
CAGTCGTAGCAATAGAGAGCTACGACTCGGTTATGGCCGACTCGGACTGG
CAGATGCGCGGGCAGCTCCATTTGGTGGAGCGCTGCCCCGCCTTAGTCTA
CAGCTCCTGGCGCGACGCTGATCATGACGTCTATCTCTACCAGTTTCCTC
AGCTGGCCGCCGCGAAACGTGAGGCTAAAGGCATTATCGCCTTCTTCATG
GGTTTCGGACTTTACAAAGAATTCACCGCCGCAGCTTTCAAGAGCATAGT
CATGCCGGGAGATCAGCCCTCACGCCTCCGGTCGCGGGAGGATATCTTTG
CATTCCTGGAGAAAGGCTCACAGCTGCGCTCTACCGctaagggaggaagt
ggggaaGGTGCCCGGCGCAAAGCGTACGTAGCTACGTGGCAGTTTTTCCA
AAAAAATGTTTTCAAGGAGGCGGTCACCGAGGCCgacccctttcctccct
tggcgCGCCGCGTGCCCAAtaagggaaagaagcgggcgtctacctcctcc
tcgatgcccAAAAAGCCGCGCCCCCGCGCCCCTTCGGCGCCCGTACCTCC
GCTCCCCCCGGCGTCCCTGCCTGTTGctgtccctgccccctcccctcccc
ccccctccacgagCGCActgtcgcctccccccccttcctctctagGCATG
ACAAGCACAGGCGAAGCGAAGAgcaaggacgaggcgggcgtTACGGTCAC
GTCATCGGAGGgagccccctccccgctgGGAGAGGTGGCTCAGGACGGGG
CAGTAGCGACGGCCGGGGGAGTGTGGAACACGATGCCAGACCCGGAGGAC
CGCTCCATCCGCGGGCTCTTCGCATCATTGCGCTGGCGCCTGCTCCGACT
AGAGGAGACctgggagggtggggacCAGTTTGTTTGGACGCTCAAGAGCT
CGCAGAGCAACATCGACAACTTATGCGACAGCCTCTTTGGGGACGcaggc
gacccggaggcggACGATTGGCGACGGATGGTAAGCAGCAGCCTAGACAA
GGCGCGCAGGAAGCTGGAGGACAAGCTGCGGGCCTtgggaggccaggggg
ggaatgCCGCTACTGGGAAGCCCGCCTATGTGCATGGGCGGGCGCTTTTA
GACGTGTACTCGGAGCtgaaagaggcggtggcgggattcgaggaagggaa
ggaggccgaggTCGAGGGCTGGGACAGCCTGGACTTTCCCGTGCGTGGAC
TCACGTTTGCGCCGACTACTGTAGCAGCCACCTCGGCGGCGTCAGTCTCA
GAGCCGGGTGCCGTGTTGCCGAGCGCGGAGGGCGCGGAGCCTGCGGTGGC
GGGCAAGGAAGACAgcccggagggggcggaagaggaaaacaGGGAacatg
gggaggagaatggagGAACGAGAGAGTTCGGAGGTGGAGACAGGGCGCGT
GAGGTGGGAGACGTACACGGTAGTGGAGAGGAGTCGCCGCCTGCGGGTGT
GGCCCCCGAgcagagcgaggaagggaaaaatgTGAGGCCCGAGCagagcg
ggaaggaagaggatgtaGGCAAGGAGAGGTTGGAGCCCATTTCCGCGAAG
CTCCCGGGAGGGCTGCTAGAAGAAGGGCCGGCCCTGCCTTCCGTCTCGAA
AGCTGCAGCAGCGGACTCCGATCCCCTCCTGAAAGCTTGCGTCGACTCCG
AGAACGGGCCGTCCCAGGGCGGAagccccctttcttcccgtgATTCTAAT
TCGAAAGCATCCCCggggggaaagccggagggagatggaggacagTTCCA
GTTTGTCGAGAGGGAAGAGCTGGCTCCGAGAGACCTGAGAAAATGCACAT
TTGCTAAACGTACCAAGTGGTTGCAAAGAAATCATGTCATTAAAGACTAA
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Synonyms
Publications