rna3983, rna3983 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3983
Unique Name	rna3983
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1663
Alignment location	CM002462.1:556902..558953 +

Link to JBrowse

Properties


Property Name	Value
Product	activating signal cointegrator 1 complex subunit 2
Orig transcript id	gnl\|cribi\|Naga_100001g137.8256.mrna
Orig protein id	gnl\|cribi\|Naga_100001g137.8256
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:556902..558953 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g137	gene3831	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3983	rna3983-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26745.1	cds3973	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:556902..558953+
coding sequence from alignment at CM002462.1:556902..558953+

mRNA sequence

>rna3983 ID=rna3983|Name=rna3983|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp
GCATGTCTCATTGGCGCCTTCGAGTGCGCACGACCTTTCGTCAAGCAACA
TCTCAAAGTACTGACTCTTCTTAAAACTGTACGTCATTAGGAGCAGGAAG
AGACCCCGTGTCCGTGGGCAACAAGGGCGCGTGACCGACTCACGCAACAT
TTTGCTTGGCACTTTCGGTGGGTCATGACGGTAGTAGATTCCTATATCAG
CTTCGTCCGAAACCACGCGTTGTTCGTGCGACCCCTGGAGGGTTTGATTC
GGACCGTCACTTTTTTCCTTCCGTCGCGCTTCTATGAAAATGGCAACGGG
GAAATTGTGTCTGAGGGGGCCTTGGCAGCCTCAAATGTGATGACGCTGGT
GAATGACCTTGTCTTGCTTGGGCCCAGGAACACTCCGCTCCTCCCCAAGG
AGGAGGATCGGCTGGGACTGACCCTCCTGCTCATAAGTCATACGGAGGTA
TTGGCAGAAAAGATATCGATGCGACTTGGAGATGGCACGGATCATCTTGT
TGTCCTGTGGCTGGAGGCTTTGAAGGTTTTATTGCGCCTAAGACTTGTGA
GCTTGCAGCAGCAGCATGGGGGCAATGCAAATGTGGTCCTGTTGGATGGA
GGGCGTGCCATCCCGACTTTCCACAGACCTGTTGAGTCGGCGCGGCCGAG
CTCTTCCACGCCGGGGGAAACGTCTTCGTTGGGGGTCAAAAATTCAGGAG
CTACTTCCGGTGTGGAAGAAGACCAGGAAGATGAGGAAGTGTTGTTGCGC
GTCCTTCCGGAAGAAGTCGCGAGGCCCAAGCGTGCCGAGTGCCGGGAGGG
ACAGGAATGGAAGCGAGGTAGACGGACCGGACGAAAGTTTCGTTATTTCT
CCGAGAGCTACAACGGAGATGACGACTACGGCTCTAATAGGCATCTGATC
GGTGACCTTACACGTTGCAACGCGAGGTGGACTCTATCCTCGCCGTCCCC
GTCGTCGGCCTCATCCTCAACCGAGTCAGGAGCCAGCACGTCTCCCTCCG
CGCCAACAACGGGGGACTGTGAAGGCGTGGCTGTGGGAATCGAATGGACA
CGAGAAGAAAGGCCGGAAGTGGCCCAAGCACGTGCACGCCTCCTGTTGGC
GGGAGAGATCCTTCATATCCTGCGCCCGTTGGTCCTAGCATCCTTGCGGT
GGGCGCTTGCTCGGCGACGGCGCGTCAAAGGGCGGGCGGTGGCCGCTCCA
CCCATGGGCCGGAGCCTCAGACGCGGCCCTCTTCATTCTGCTGCTCCAGA
GTCGTTGCTCGTGCTGCTCCCCGCATTGATGGATCTCGTCAGCTACCAGT
GCACCACAGGGGCCCTGAATGGCGGCGACAATGCTCTCAAGCAGTCGTGC
GAAGACGAGCTCCGACGGCGTAAGAATCTTTGGCTCTTGTACCTTCTGCG
CACACCAGTCTTTGAGGGGCTCACGCATCCGGTAACGAGGGCCGTGGATG
GTAGCTTGGTCCGCCTGCCCCTTGTCGGTGGGCTTGCCTCGTACAGTTAC
CAGGCCCTCATTTATATCCAACGCCATTTCACTCTCACCTCCGGCTCGTG
AGCGCAATACTTGCGATGGCAACAGGGGAAGAGAAGCGAAAGAGTTGAGA
AACTTTTAGAGAAAAGTATGTTTATACCCAATAAGCACAAATTACACTTT
CAACGGTTCTTAA

protein sequence of rna3983

>rna3983-protein ID=rna3983-protein|Name=rna3983|organism=Nannochloropsis gaditana|type=polypeptide|length=683bp
MNPRLPGGLDTPLADMWRSAPIGELPPYLPQDNGCRLEAGLLKMQARALQ
TLLKMKFPAFASHILYNTQLESFLDTYLNYAPRPYEAAIDRRIGTSDRFE
SSLQGVEAVRTALHRSVLLAYLRFFTSHEEQQQVPSFATLASQSHVMDIP
RALDLCNLYGFTDAGLLARLLLGAIAFVESGLLSQLEDACRSVSEIFSDL
EGAVASGSGDGETQDALEYLTDVTGGLSRLVLAVPLTSLGLASTPRLFGG
LGRIYDVLIARFEAEGETRGCSSNGERACKYAGFACGCARALVGGVVAGL
LALARTREGALEALFTFISELIQTTDADEEADEGGQGMGRLVRDCAGGLL
SRLQAFLSAPADEQRPAPDMSGVSYLIELLRSTTGGYEAPTPRTGLFIKE
PRAGRGAEGERRVQRPARSVEAMVQEVRQVCPGLGEGFVHACLAVMGYNI
NMVVNALLEGSALPYPLDTLDRSLPSPLGADKLRKKGGEEAEEARDEEFI
ARQKAYLRQMEKDAEEDAYLLQEYDDDFDDQYSGEQTMFSRDNTREDFEA
IRKYNNLMRKEEEEEHFWEGMQLKQPELPTIARDSEDDDKDSRGRTKEPK
SSSQTVLSGSGSFFINAREKSRVRGTSGSLLSRGESAAQGRGEDGATSHP
MSALARRRKEKQKHLRANHNRKVKAVRKSGVNL

mRNA from alignment at CM002462.1:556902..558953+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3983 ID=rna3983|Name=rna3983|organism=Nannochloropsis gaditana|type=mRNA|length=2052bp|location=Sequence derived from alignment at CM002462.1:556902..558953+ (Nannochloropsis gaditana)
ATGAACCCGCGTCTTCCAGGCGGACTCGACACCCCTTTAGCCGACATGTG
GCGTTCTGCGCCCATTGGAGAGCTACCACCGTACTTGCCACAAGACAACG
GGTGCCGTCTGGAGGCAGGCCTCCTGAAAATGCAAGCCAGAGCTCTGCAG
ACTCTCCTCAAGATGAAGTTCCCTGCTTTCGCGAGCCACATTCTCTACAA
TACCCAGTTGGAAAGTTTCCTTGACACGTATTTGAACTACGCCCCCCGGC
CCTACGAGGCGGCTATCGACCGTCGGATCGGGACATCGGACAGGTTCGAA
AGCTCTTTGCAGGGCGTCGAGGCTGTCCGTACTGCCCTGCACCGGTCGGT
CTTGCTCGCCTACCTCCGATTTTTTACGAGCCAcgaagagcagcagcaag
tccCGTCTTTCGCGACACTTGCCAGTCAGTCTCACGTCATGGACATTCCC
CGGGCGTTGGACCTCTGCAACCTGTACGGCTTCACGGACGCAGGTCTGCt
ggctcgcctcctcttgggTGCCATTGCATTCGTGGAGAGCGGCCTACTCT
CGCAACTCGAAGACGCCTGCCGCTCTGTCAGCGAGATATTCTCTGACCTA
GAGGGAGCTGTCGCGTCGGGAAGCGGTGATGGAGAGACTCAGGACGCCTT
AGAGTATCTCACCGACGTGACGGGAGGCCTGAGCCGGCTGGTCCTCGCCG
TGCCCCTGACTTCCTTGGGACTGGCATCGACTCCCCGTCTCTTCGGGGGA
TTGGGGCGGATTTACGACGTGCTGATAGCGCGATTCGAGGCCGAGGGAGA
GACCAGGGGCTGCAGTTCtaatggagagagggcatGTAAGTACGCAGGCT
TCGCGTGTGGGTGCGCGAGGGCTCTCGTTGGGGGCGTGGTGGCCGGCCTC
CTCGCGCTGGCTCGCACGCGCGAGGGGGCTCTCGAGGCTCTTTTCACCTT
TATCAGCGAGCTTATTCAGACGACCGacgcagacgaggaggcggacgagg
gaggacagggaatGGGTCGGCTCGTCCGGGACTGCGCGGGCGGGCTTCTG
AGCCGCTTGCAGGCCTTCCTGTCGGCGCCTGCCGATGAGCAACGTCCGGC
TCCCGACATGTCTGGCGTATCGTACCTAATAGAGCTTCTGAGGAGCACCA
CGGGTGGATATGAGGCCCCTACACCGCGGACAGGACTCTTCATCAAAGAG
CCCCGGGCCGGACgcggggcggaaggggaacggCGAGTCCAGCGGCCGGC
CCGGagcgtggaggcgatggtcCAGGAAGTGAGGCAGGTCTGTCCGGGAC
TGGGAGAGGGATTCGTTCATGCCTGCCTCGCCGTTATGGGCTACAACATA
AACATGGTGGTGAACGCCCTGTTGGAGGGAAGTGCCTTGCCCTACCCGCT
CGACACCCTGGACCGATcgctgccctctcccctcggcGCGGATAAGCTcc
ggaagaaaggaggagaggaggcggaggaggcccgCGACGAGGAATTCATC
GCCCGGCAGAAAGCGTACCTTCGTcagatggagaaggacgccGAGGAAGA
CGCATATCTGTTGCAAGAGTACGACGACGATTTCGATGACCAATATTCAG
GGGAACAGACAATGTTTTCTCGCGATAACACTCGAGAGGATTTCGAGGCG
ATTAGAAAATATAACAATCtaatgagaaaggaagaggaagaggaacatTT
CTGGGAAGGAATGCAACTCAAGCAGCCCGAATTGCCTACAATCGCAAGGG
ACAGtgaggacgacgacaaggattcgagggggaggacaaaagAGCCTAAA
TCGAGCTCCCAGACAGTATTGTCTGGTTCTGGTTCTTTCTTCATAAATGC
TAGAGAAAAATCGAGAGTTAGAGGTACTAGCGGATCGCTTTTAAGTAGAG
GAGAAAGCGCTGCgcaaggaagaggtgaaGATGGCGCCACCAGTCATCCC
ATGAGCGCGCTcgcgagacggaggaaggaaaaacaaAAACACTTGCGTGC
AAACCATAACCGCAAGGTTAAGGCAGTGCGTAAATCAGGAGTTAATCTCT
GA

Coding sequence (CDS) from alignment at CM002462.1:556902..558953+

>rna3983 ID=rna3983|Name=rna3983|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at CM002462.1:556902..558953+ (Nannochloropsis gaditana)
ATGAACCCGCGTCTTCCAGGCGGACTCGACACCCCTTTAGCCGACATGTG
GCGTTCTGCGCCCATTGGAGAGCTACCACCGTACTTGCCACAAGACAACG
GGTGCCGTCTGGAGGCAGGCCTCCTGAAAATGCAAGCCAGAGCTCTGCAG
ACTCTCCTCAAGATGAAGTTCCCTGCTTTCGCGAGCCACATTCTCTACAA
TACCCAGTTGGAAAGTTTCCTTGACACGTATTTGAACTACGCCCCCCGGC
CCTACGAGGCGGCTATCGACCGTCGGATCGGGACATCGGACAGGTTCGAA
AGCTCTTTGCAGGGCGTCGAGGCTGTCCGTACTGCCCTGCACCGGTCGGT
CTTGCTCGCCTACCTCCGATTTTTTACGAGCCAcgaagagcagcagcaag
tccCGTCTTTCGCGACACTTGCCAGTCAGTCTCACGTCATGGACATTCCC
CGGGCGTTGGACCTCTGCAACCTGTACGGCTTCACGGACGCAGGTCTGCt
ggctcgcctcctcttgggTGCCATTGCATTCGTGGAGAGCGGCCTACTCT
CGCAACTCGAAGACGCCTGCCGCTCTGTCAGCGAGATATTCTCTGACCTA
GAGGGAGCTGTCGCGTCGGGAAGCGGTGATGGAGAGACTCAGGACGCCTT
AGAGTATCTCACCGACGTGACGGGAGGCCTGAGCCGGCTGGTCCTCGCCG
TGCCCCTGACTTCCTTGGGACTGGCATCGACTCCCCGTCTCTTCGGGGGA
TTGGGGCGGATTTACGACGTGCTGATAGCGCGATTCGAGGCCGAGGGAGA
GACCAGGGGCTGCAGTTCtaatggagagagggcatGTAAGTACGCAGGCT
TCGCGTGTGGGTGCGCGAGGGCTCTCGTTGGGGGCGTGGTGGCCGGCCTC
CTCGCGCTGGCTCGCACGCGCGAGGGGGCTCTCGAGGCTCTTTTCACCTT
TATCAGCGAGCTTATTCAGACGACCGacgcagacgaggaggcggacgagg
gaggacagggaatGGGTCGGCTCGTCCGGGACTGCGCGGGCGGGCTTCTG
AGCCGCTTGCAGGCCTTCCTGTCGGCGCCTGCCGATGAGCAACGTCCGGC
TCCCGACATGTCTGGCGTATCGTACCTAATAGAGCTTCTGAGGAGCACCA
CGGGTGGATATGAGGCCCCTACACCGCGGACAGGACTCTTCATCAAAGAG
CCCCGGGCCGGACgcggggcggaaggggaacggCGAGTCCAGCGGCCGGC
CCGGagcgtggaggcgatggtcCAGGAAGTGAGGCAGGTCTGTCCGGGAC
TGGGAGAGGGATTCGTTCATGCCTGCCTCGCCGTTATGGGCTACAACATA
AACATGGTGGTGAACGCCCTGTTGGAGGGAAGTGCCTTGCCCTACCCGCT
CGACACCCTGGACCGATcgctgccctctcccctcggcGCGGATAAGCTcc
ggaagaaaggaggagaggaggcggaggaggcccgCGACGAGGAATTCATC
GCCCGGCAGAAAGCGTACCTTCGTcagatggagaaggacgccGAGGAAGA
CGCATATCTGTTGCAAGAGTACGACGACGATTTCGATGACCAATATTCAG
GGGAACAGACAATGTTTTCTCGCGATAACACTCGAGAGGATTTCGAGGCG
ATTAGAAAATATAACAATCtaatgagaaaggaagaggaagaggaacatTT
CTGGGAAGGAATGCAACTCAAGCAGCCCGAATTGCCTACAATCGCAAGGG
ACAGtgaggacgacgacaaggattcgagggggaggacaaaagAGCCTAAA
TCGAGCTCCCAGACAGTATTGTCTGGTTCTGGTTCTTTCTTCATAAATGC
TAGAGAAAAATCGAGAGTTAGAGGTACTAGCGGATCGCTTTTAAGTAGAG
GAGAAAGCGCTGCgcaaggaagaggtgaaGATGGCGCCACCAGTCATCCC
ATGAGCGCGCTcgcgagacggaggaaggaaaaacaaAAACACTTGCGTGC
AAACCATAACCGCAAGGTTAAGGCAGTGCGTAAATCAGGAGTTAATCTCT
GA

Synonyms

Publications