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Properties
| Property Name | Value |
|---|
| Product | Peroxisome membrane protein, Pex16 |
| Orig transcript id | gnl|cribi|Naga_100001g138.8109.mrna |
| Orig protein id | gnl|cribi|Naga_100001g138.8109 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:554935..556597 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3982 ID=rna3982|Name=rna3982|organism=Nannochloropsis gaditana|type=mRNA|length=5865bp
ATGAAGGGTGCTACCCTCGGCTACACCAGCCACAGCAGAAAAAGCGGGGA
TGGAAGCGGCAAGACCAGTAGTAAATTGATGAAAGAGGCTGGCAGCTGGG
TTGCTGATGGAGAAGAAGCTGCCGATGTGATCAGTACGCGAGAGAAAGTT
GTCCGGGAGGCAAGAAAGCGTGGAACACCCAAGGACGTGGAAAGTGTGGC
AATAGAGCTGCTAGCTCGAGAGCAACATGAGGCCTGCTGGTTACGGCAAG
AGAAAGCCTCTTTACTAGCACAATTAGAGCGGGCTCGACGGAAAGCTGGG
CATTTACAGAGCCAGCTGTCTGGGTCGATGCAGGAGTCCCAATCGAAAAA
GCTGTTGGATTCGCGACTTCTATCTAGGCGGCTGTCTTTGCGAGATACTG
ACGAGGCGAAATCTGTCGTTGATCTGATTCGTGCTATACATTCTTATGGA
GCAGAGAGTGCAGCTGGTGGTTTGCCTCCTGCTGAAGGAAGCACCGTGGC
TCTGGATCAGGTCCAGGCAAGAGAGGGGAGGCGGAACCTGAACCGGGCTC
TTCGATGCTTAGTGATGGATAATTTTTGCCACGTGAACACTTGCATCGCT
GAGGTAGTTAAATTTACAGATAGACAATACCAGCGAGAATCTGCTTTAAA
TGATCAGGACGCGGGTCTAGAGCCGCTGAACATGCAAATGGTGTTCGTCG
AGGGCGAGAGTCTTATCTTCCGCGTCATGGGGATGCGGCTGCAGCCTCGG
GACGTGTACTCGCTGTGTTCGCTGGAAGAGGATCTCCCGGATGCCGGCTG
GGGCTTAAAAACACTCTTGGCCGTCTCAGATATCCCTGTGATAATATCGA
CGCCCTTCCAGCTGCGACTGGACTCGGCTGAGCGGGGACCTCGAGGTGTC
CTCTGCCCCGAGTGGGTGGCTTCTCTCGACGCCGAAACCCCGCAGGGAGA
GGCGATCATCCCTCCTTCCTACAGGGCTCGGATCAAAGACAACTGTACAT
TTATCTACGCGCCATTGCGGGAGTCGGCGAAAGAGCTGCTGCGGTCTGCG
GACATGGAGCCTTTCGAGGGACTGGCGTTGGCGTTTCTGGAGCGCGCCCG
CAAGTTGGACATGATGCTTGTCTCTTATGAGGGTCCCGCGGAGGTCAAGG
TCGTCCGCAACATTCAACACGAAGTAGAGCTGCGCCCGACCTGCGTGCCT
GAGGAGGGGAAGGCGACGGGAGCGACCCGCTTGGCCGCGTTGAAGTCCTC
AGTGCGCCTCGTGGCTCATCGCGTCGCCGATTGCGTGGTGCGTTGCAGTA
AGTCCACGCGCATCCCGGATCGCAACCACCAGGAGGATGGACAATCAGGC
ACTAGCTTGTACAGGTTACACGAGTTTCAAATCGCATTGGAGAGCAGTGA
GGGCCACGGCACGCCGGCGAGAACGCAGATAGCTCTTGCTTTCCCGCTCG
GGGCGGATGGCTTTCCCATAACAGAAGATATACGACGGAGAAAGCACCAC
GGCAACGTTCACACTGAGTTTATCTACTGCCAGATGCCGGTCCCTTGCGC
TGGAAAGCTCCCCTTCGCCCTGCAGGCCGACTTCGACATGACCAGCGACA
CGCTTGGCCTCCACCCCACCTCCTCCTGGAACCGTTGGCTGCTCTCCTGC
TCCGTCCACCTGTTCGTCATTGCCACCATAGCGGACCCGACACTCTGCGA
GGCTGTTGACCGCTACACTCCCCGAATCGAGGAGATGCCCAAAGGCGGTC
TGTGGAGTGGCCTGTGGGAGTTGTTGGATCGCTTGCTCCAACGCCACGTG
AGGGTCCGAACTGAGAGTGGGTTGATGGTTTCCCGCGCACAGGCTGTTTT
GCGTCCTCCTTCCCTCAGCTCCGCCTTCATTTCGGATGCGTTGTTGCAGG
AAGTCACTGGCGGTCGAAAGCACTTCGTGGACGCGGCAACGTTGGATGCC
TCCACGGTGAAGGGCGATGCCCAAGGCGAGGGACGCGTCTGTGACCTGGA
TATTGTGTTGGAGTGTGTCGCAAGGCTGGTGGCAAAGTCCCAGTGGGGTA
GAGACGCTTCAACCCTGCAACAGCTCTGGCGCTTCGTGGCGGAACAAATG
GCTGAAGACAGGAAGGACGTCACTCCCACCTCGAGGAGGCTCCTGCGCAC
CTTGCCGCTCTACCCCGTGCGAGGAAGGGGTATGAGGGCGTTTGAAGGAG
CGACACCTCTTTTTTTTGGTTTGGACCGCAAAGTTAGAGTTGCTCTTGAC
ACTTGCGGCCCACATGTCCGGGCAGAGGTCGCGCCCGAGCTGGATTTCGA
TTGTCTTCGTGGCAGTCGAGGTGCAGAGTATACAGATTTGCTGAAACATG
CAATTCAAGCGATCGGAATCAAGGAAGCGAAAATTGAGGATTTGCAGTCG
GTTCTGCGGAGATTGCTGACGCAAAAGCAAGTCTTGCATCCCCCTTCAAC
CCCTAATGAGATATCGAATCAAGGGCCCGTTTCCATGGTAAACTCGGACA
TGTTTTGGGCGTTGCGGTCTTTGGTTGTCGAGGGCATGGGCTATGCCTCG
TTGCAAGAATTTGTCGGGAATAAGTCGCTCTCCGTACCTGTGCTCCGCCT
ACAATCAGATGGAGCCTTGGGGCGTCGCACTACCGATTTAAACGTAGCTG
ACGCTAGTATTGGGCGCTTCGTCACCCCTTGCTTCCTAGGGGTAAGCCTG
ACGCGCACTCCTGAGGACGCTGTTGCTCTTCTCAAGACGGCGGCGTCGTG
GACACAAGATCTAGACAATCATCATGTTGGGGACCTGCTTTCAGCACCCA
CAAGTGCGACAAAGTCGTGGGGGATGATGCTACAATGGGAGGACTGCGTG
AGAAGAGAGCTGAAAGTCGATGGAGGAACGAATCGTCGCTGGCAAGGATT
TTTCCAAAACATCATCTCCCCACAAACGCTTGTAGACGAAGCAATGAAGG
GCCTCGTCAGCCCTACTACTACTCTTGCTGATCGACAAGCCTTTTCTGGG
CTCTTGCAGCTCTATAAAGAGCGATATCCTCTCGTCTTTCAGGAAGTGCG
GGCTGCTCATAGAGTCTCGTCTGCCCGGTTTCTGGAGATTTTGCAGGATC
CCCTTTTCAGTCAAAATGCACAGAAGTTCCTCAAACTGTCCCAAGGGATT
CTTGATGCATGCTTGGAGCTTGTTGTCGACGCTAAGTACGATGTGTCAAC
ACACTTTCGAAAAGAGCTGATGGCGCTATTACCAATGCCTGAGACAGAGG
AGTGTCCTGAGATTTGCCAACTTCAGGACTTGGTTTATTACAACAAGGTA
GATGTCGATTCTCCACACACAGTGGCCCTGGTGATGCATGTACTGACTCG
GCAGCTTGTGCAACATGGGCATCTCGTTGATTTCGAACCGCAAGACTTCC
CTTCTTCTGCGACACATGAGACACTGAAAGTCTCTCCGCCTGGGCAGGCG
CTAAAAATCACAAAAAAAGGCTCCGAGAAATGGGCTTTCCTCCTCAAAGC
GCTCTTTTGGAAAGCCTTAGAAAATATGACTCGATCGTATCATCAGGTTG
GCTCTAGTGGGGACACCAAGCAATCTGGGAGGAATGTCGTGAGCCAAGAG
GGCGAGCTGGTGCTGCTCGAGGATTACTGCCGACACTATGGCGTCTGGGC
TGCATCATTAGGTGCCCTGTGCAACGGAGCGCCGGCATGCTACCCGCTCA
GGTACGCCGTGTGGACCCTGGAGGACCCAATATCTAGCTTGGTGGTCGAA
AGTGCGCATGCCAAGAATATGTCGGTAACGGTGATAGCGCTGGATAAGGA
AATCGGTGACTCGCTGGGTCCAGATCAAGATGGCTCAAGTGATATAGTGC
ATCGACTCTTCGTCGATACGCTGGGTGTCTCTGAAGGACGAATCCGCAAA
AGATACTTGCTCATGCTGCAGGAGGCTCTCGAACGTTGGTCGCACGTTGC
AGGGCCAATGCCACGAGACGTAGAGGCTTTGTATAGGGCCCTGGCGGTTG
CCGCGGGACTTGCTCACTCGAGCTCCGCGAGTCAAGTAGATCCTGACGGC
ACACCTGAGACGCGAATCCGCACCAAGAATGCAGCAGTTTGTTTCGAGTT
TTCAACAATACCAGTTTTGGACATGAATTTTAAAGTAACATCGCTAACCG
TATTAAGCGCCGGCGCCGCTGCTGTAGCTGCTGCCTCGGAAGATTTCCTC
AGCGGGCGAGTGCTGCACATGCGCCCTAACGGTGGTGGCGCCAGCAATCT
CTGTGTTTTGGGAAACGGCAACATCGCGAAAGCAGGGCCACAGCCCTTGG
TCGGTGTGGCAGCCTCCGGAGACAGCGATGATAGCGCGCTCGACTGGTTT
TATCGGGATTTTTTCCCATCGCGTTGCCTGCATCCAGCAATCTTCTCGCT
TCTTAAGCAGCTCGATCCAGTGCTCCTCCCACGGCTTGCGATCGCCAAAC
CCCGACCTTCCTTCTTAGAATCCTATGGTGACACTACCAGCACCATGGTG
AGCGTGCTGCGAGCCATGAAATTGGATGTCGTGAATGCGGCGCGCCTCCT
TTGCGAAGTTTATGCCGGTTCTTCACTCCCTCACACCGAGCTTGCTAGGT
ACTGGGCCAATGTGATCGAGCTTCGTGATCTGGTACTCGCCGAGCTTTGG
AAGGCTGAAGGTCAGGATCGCAACGAGGAGTTGATAGAGACTGTGCGAAC
CAGCTTACGATTACCGTTGTGCGCCAAGACACAGCCACCTGGTCATGGCG
CCGGGGGAAGTCGGGACAGAAGAGCTCCTGTGCCAATGGCAAATGCCCTT
CAGCGCGCAGAAAATCAATATCCCATTTACTTGGGGTCGCTGTTAGGCAT
TGATCTTGAAGTAAGCGACAAGCACCACGAGCAGATCTCCGGGATGGTTA
AACACCCAGGCACGACACGAGAATCCTCCTGGCACCGCGCAAGCCGTGCC
GAGGACGGCTTTACAAAAGTGGAAGAAAGCTGCTATTGGGAGCGCTTCTT
ATTAGCATTGGGAGTGGTACCGCTTACTGAGGCTCAGCTTCCTCTTATTC
CAACACAAGTCTTGAATAAAGTGTTTTTGGCGCTTGCGAAGTTCAACGGG
TTGCTAAACAGTACGGAGCCCACTGTCGCCTCTAAGTACAATATTTGGCA
CACTTATCACGTTCTGTACCGTGCGGTCGATGGAAACATGTACCTAACAC
GTTACAAAGGCCTTCGTTCCGCGACTGCTCCCGGCACCGAGAATTGCGGG
GGACAGAGCTTTCACCATACGGCGCTTACCGGCACGGGCACTGTCACCAC
CTCAGCGCACAAGCAACAGCAACACCCACAACAAGTTAATGAAGAACCAC
AGTCGCAGTCGCAGCAGCAGCACCAGCAGCAACAACAACAGCAACAACAA
ACAACTGCGACCTCTCAAGCAGCCACAAATGGAACATTTTCCTACTATGG
AACTAGTGCATTGCCATCGGTCAGCCCGTATCTTCCGACATCATCGTACC
CTTTCTCAGTCGCATCGTCGTCGTATGGGACCGGGACTGCTCCTCGCCCG
CCGCCGGTAGAGCTACACACTGGTTTCGCTCCGCCTCCAGTCAAAAGGCA
GCGCTCTCCAGCCTGCTCGCACGCGCCAACCCAACACAACAGCAAAACAC
AGATTGCGAGCATAAGGCCAAAACCCCTCGTTTGGTGCCTCCAGTGCCCC
CCCTCGCTCCATCACCGGTCCAACAGGAGGAGGGAGAGGTCGAGGAGGGT
GAGATCGAAGACTGATCGCATACTATTTGCTTTCGATTGGCTTTTAATCA
CGGATCGGAAGGTTTATGAACATAGTTTCAATCATACAAAAGAAAAGACA
CGCATTCGACTGTAA back to topprotein sequence of rna3982 >rna3982-protein ID=rna3982-protein|Name=rna3982|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGAL
AASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMR
LGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFH
RPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVAR
PKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNA
RWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVA
QARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRR
GPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRK
NLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQR
HFTLTSGS back to topmRNA from alignment at CM002462.1:554935..556597- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3982 ID=rna3982|Name=rna3982|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp|location=Sequence derived from alignment at CM002462.1:554935..556597- (Nannochloropsis gaditana)
GCATGTCTCATTGGCGCCTTCGAGTGCGCACGACCTTTCGTCAAGCAACA
TCTCAAAGTACTGACTCTTCTTAAAACTGTACGTCATTAGGAGCAGGAAG
AGACCCCGTGTCCGTGGGCAACAAGGGCGCGTGACCGACTCACGCAACAT
TTTGCTTGGCACTTTCGGTGGGTCATGACGGTAGTAGATTCCTATATCAG
CTTCGTCCGAAACCACGCGTTGTTCGTGCGACCCCTGGAGGGTTTGATTC
GGACCGTCACTTTTTTCCTTCCGTCGCGCTTCTATGAAAATGGCAACGGG
GAAATTGTGTCTGAGGGGGCCTTGGCAGCCTCAAATGTGATGACGCTGGT
GAATGACCTTGTCTTGCTTGGGCCCAGGAACACTCCGCTCCTCCCCAAGG
AGGAGGATCGGCTGGGACTGACCCTCCTGCTCATAAGTCATACGGAGGTA
TTGGCAGAAAAGATATCGATGCGACTTGGAGATGGCACGGATCATCTTGT
TGTCCTGTGGCTGGAGGCTTTGAAGGTTTTATTGCGCCTAAGACTTGTGA
GCTTGCAGCAGCAGCATGGGGGCAATGCAAATGTGGTCCTGTTGGATGGA
GGGCGTGCCATCCCGACTTTCCACAGACCTGTTGAGTCGGCGCGGCCGAG
CTCTTCCACGCCGGGGGAAACGTCTTCGTTGGGGGTCAAAAATTCAGGAG
CTACTTCCGGTGTGGAAGAAGACCAGGAAGATGAGGAAGTGTTGTTGCGC
GTCCTTCCGGAAGAAGTCGCGAGGCCCAAGCGTGCCGAGTGCCGGGAGGG
ACAGGAATGGAAGCGAGGTAGACGGACCGGACGAAAGTTTCGTTATTTCT
CCGAGAGCTACAACGGAGATGACGACTACGGCTCTAATAGGCATCTGATC
GGTGACCTTACACGTTGCAACGCGAGGTGGACTCTATCCTCGCCGTCCCC
GTCGTCGGCCTCATCCTCAACCGAGTCAGGAGCCAGCACGTCTCCCTCCG
CGCCAACAACGGGGGACTGTGAAGGCGTGGCTGTGGGAATCGAATGGACA
CGAGAAGAAAGGCCGGAAGTGGCCCAAGCACGTGCACGCCTCCTGTTGGC
GGGAGAGATCCTTCATATCCTGCGCCCGTTGGTCCTAGCATCCTTGCGGT
GGGCGCTTGCTCGGCGACGGCGCGTCAAAGGGCGGGCGGTGGCCGCTCCA
CCCATGGGCCGGAGCCTCAGACGCGGCCCTCTTCATTCTGCTGCTCCAGA
GTCGTTGCTCGTGCTGCTCCCCGCATTGATGGATCTCGTCAGCTACCAGT
GCACCACAGGGGCCCTGAATGGCGGCGACAATGCTCTCAAGCAGTCGTGC
GAAGACGAGCTCCGACGGCGTAAGAATCTTTGGCTCTTGTACCTTCTGCG
CACACCAGTCTTTGAGGGGCTCACGCATCCGGTAACGAGGGCCGTGGATG
GTAGCTTGGTCCGCCTGCCCCTTGTCGGTGGGCTTGCCTCGTACAGTTAC
CAGGCCCTCATTTATATCCAACGCCATTTCACTCTCACCTCCGGCTCGTG
AGCGCAATACTTGCGATGGCAACAGGGGAAGAGAAGCGAAAGAGTTGAGA
AACTTTTAGAGAAAAGTATGTTTATACCCAATAAGCACAAATTACACTTT
CAACGGTTCTTAA back to topCoding sequence (CDS) from alignment at CM002462.1:554935..556597- >rna3982 ID=rna3982|Name=rna3982|organism=Nannochloropsis gaditana|type=CDS|length=1377bp|location=Sequence derived from alignment at CM002462.1:554935..556597- (Nannochloropsis gaditana)
ATGACGGTAGTAGATTCCTATATCAGCTTCGTCCGAAACCACGCGTTGTT
CGTGCGACCCCTGGAGGGTTTGATTCGGACCGTCACTTTTTTCCTTCCGT
CGCGCTTCTATGAAAATGGCAACGGGGAAATTGTGTCTGAGGGGGCCTTG
GCAGCCTCAAATGTGATGACGCTGGTGAATGACCTTGTCTTGCTTGGGCC
CAGGAACACTCCGCTCCTCCCCAAGGAGGAGGATCGGCTGGGACTGACCC
TCCTGCTCATAAGTCATACGGAGGTATTGGCAGAAAAGATATCGATGCGA
CTTGGAGATGGCACGGATCATCTTGTTGTCCTGTGGCTGGAGGCTTTGAA
GGTTTTATTGCGCCTAAGACTTGTGAGCTTGCAGCAGCAGCATGGGGGCA
ATGCAAATGTGGTCCTGTTGGATGGAGGGCGTGCCATCCCGACTTTCCAC
AGACCTGTTGAGTCGGCGCGGCCGAGCTCTTCCACGCCGGGGGAAACGTC
TTCGTTGGGGGTCAAAAATTCAGGAGCTACTTCCGGTGTGGAAGAAGACC
AGGAAGATGAGGAAGTGTTGTTGCGCGTCCTTCCGGAAGAAGTCGCGAGG
CCCAAGCGTGCCGAGTGCCGGGAGGGACAGGAATGGAAGCGAGGTAGACG
GACCGGACGAAAGTTTCGTTATTTCTCCGAGAGCTACAACGGAGATGACG
ACTACGGCTCTAATAGGCATCTGATCGGTGACCTTACACGTTGCAACGCG
AGGTGGACTCTATCCTCGCCGTCCCCGTCGTCGGCCTCATCCTCAACCGA
GTCAGGAGCCAGCACGTCTCCCTCCGCGCCAACAACGGGGGACTGTGAAG
GCGTGGCTGTGGGAATCGAATGGACACGAGAAGAAAGGCCGGAAGTGGCC
CAAGCACGTGCACGCCTCCTGTTGGCGGGAGAGATCCTTCATATCCTGCG
CCCGTTGGTCCTAGCATCCTTGCGGTGGGCGCTTGCTCGGCGACGGCGCG
TCAAAGGGCGGGCGGTGGCCGCTCCACCCATGGGCCGGAGCCTCAGACGC
GGCCCTCTTCATTCTGCTGCTCCAGAGTCGTTGCTCGTGCTGCTCCCCGC
ATTGATGGATCTCGTCAGCTACCAGTGCACCACAGGGGCCCTGAATGGCG
GCGACAATGCTCTCAAGCAGTCGTGCGAAGACGAGCTCCGACGGCGTAAG
AATCTTTGGCTCTTGTACCTTCTGCGCACACCAGTCTTTGAGGGGCTCAC
GCATCCGGTAACGAGGGCCGTGGATGGTAGCTTGGTCCGCCTGCCCCTTG
TCGGTGGGCTTGCCTCGTACAGTTACCAGGCCCTCATTTATATCCAACGC
CATTTCACTCTCACCTCCGGCTCGTGA back to top
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