EWM26598.1, cds3972 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26598.1 vs. NCBI_GenBank
Match: gi|585108686|gb|EWM26598.1| (Peroxisome membrane protein, Pex16 [Nannochloropsis gaditana]) HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0 Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0 Query: 1 MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458 MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS Sbjct: 1 MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458
BLAST of EWM26598.1 vs. NCBI_GenBank
Match: gi|299470103|emb|CBN78132.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.485 bits (184), Expect = 5.705e-11 Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0 Query: 395 ELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458 ELRRRK LW LYL+R+P FE L PV+R G +P++GG+A Y+ L+Y+QRH TS S Sbjct: 426 ELRRRKMLWFLYLMRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 489
BLAST of EWM26598.1 vs. NCBI_GenBank
Match: gi|567959596|gb|ETK85165.1| (hypothetical protein L915_09954 [Phytophthora parasitica] >gi|567988308|gb|ETL38587.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567988309|gb|ETL38588.1| hypothetical protein, variant 3 [Phytophthora parasitica]) HSP 1 Score: 62.003 bits (149), Expect = 8.691e-7 Identity = 63/203 (31.03%), Postives = 84/203 (41.38%), Query Frame = 0 Query: 259 PSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQ-ARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALI--YIQRHFTLTSGS 458 P + + T A+ S P G + I + + EVA +R LL+AGE+ HILRP+V A LR RR P S P +L LL L L + + ++E+ RK LLYLLR PVF +T P T L +P VG L + A++ Y Q HF TS S Sbjct: 208 PGARTGKTFGKATVSEPEPPAGKSDDEPNKISF-EDATIEVADGSREDLLVAGEVCHILRPVVYAVLR-----------------------RRRPATSWTP-VILSLLVELSGLALSAAAVKPVESSKPVIGDKAKEEIAARKMALLLYLLRDPVFATVTKPATGKAADVLDYIPGVGKLFRFGTTAVLDYYHQFHF-YTSAS 384 The following BLAST results are available for this feature:
BLAST of EWM26598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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