EWM26598.1, cds3972 (CDS) Nannochloropsis gaditana

Overview
NameEWM26598.1
Unique Namecds3972
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:555047..556423 -

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Properties
Property NameValue
Protein idEWM26598.1
ProductPeroxisome membrane protein, Pex16
Orig transcript idgnl|cribi|Naga_100001g138.8109.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:555047..556423 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005777peroxisome
Vocabulary: INTERPRO
TermDefinition
IPR013919Pex16
Homology
BLAST of EWM26598.1 vs. NCBI_GenBank
Match: gi|585108686|gb|EWM26598.1| (Peroxisome membrane protein, Pex16 [Nannochloropsis gaditana])

HSP 1 Score: 919.457 bits (2375), Expect = 0.000e+0
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0
Query:    1 MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458
            MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS
Sbjct:    1 MTVVDSYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTPLLPKEEDRLGLTLLLISHTEVLAEKISMRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458          
BLAST of EWM26598.1 vs. NCBI_GenBank
Match: gi|299470103|emb|CBN78132.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.485 bits (184), Expect = 5.705e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0
Query:  395 ELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458
            ELRRRK LW LYL+R+P FE L  PV+R   G    +P++GG+A Y+   L+Y+QRH   TS S
Sbjct:  426 ELRRRKMLWFLYLMRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 489          
BLAST of EWM26598.1 vs. NCBI_GenBank
Match: gi|567959596|gb|ETK85165.1| (hypothetical protein L915_09954 [Phytophthora parasitica] >gi|567988308|gb|ETL38587.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567988309|gb|ETL38588.1| hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 62.003 bits (149), Expect = 8.691e-7
Identity = 63/203 (31.03%), Postives = 84/203 (41.38%), Query Frame = 0
Query:  259 PSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQ-ARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNALKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALI--YIQRHFTLTSGS 458
            P + +  T   A+ S   P  G  +     I +  +   EVA  +R  LL+AGE+ HILRP+V A LR                       RR P  S  P  +L LL  L  L         +      +    ++E+  RK   LLYLLR PVF  +T P T      L  +P VG L  +   A++  Y Q HF  TS S
Sbjct:  208 PGARTGKTFGKATVSEPEPPAGKSDDEPNKISF-EDATIEVADGSREDLLVAGEVCHILRPVVYAVLR-----------------------RRRPATSWTP-VILSLLVELSGLALSAAAVKPVESSKPVIGDKAKEEIAARKMALLLYLLRDPVFATVTKPATGKAADVLDYIPGVGKLFRFGTTAVLDYYHQFHF-YTSAS 384          
The following BLAST results are available for this feature:
BLAST of EWM26598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108686|gb|EWM26598.1|0.000e+0100.00Peroxisome membrane protein, Pex16 [Nannochloropsi... [more]
gi|299470103|emb|CBN78132.1|5.705e-1151.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|567959596|gb|ETK85165.1|8.691e-731.03hypothetical protein L915_09954 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3982rna3982Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications