rna3976, rna3976 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3976
Unique Name	rna3976
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	225
Alignment location	CM002462.1:539313..541498 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g144.8233.mrna
Orig protein id	gnl\|cribi\|Naga_100001g144.8233
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:539313..541498 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g144	gene3825	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3976	rna3976-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26722.1	cds3966	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:539313..541498+
coding sequence from alignment at CM002462.1:539313..541498+

mRNA sequence

>rna3976 ID=rna3976|Name=rna3976|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGGTGCCACCAGCAGCCGCCCCGTCGGACGCAGGTAAGGCTTTCAATCA
CGCAAGCCATATCCATGACGCCTGTCGTGCTTTTTGTGTTACCTCTATCA
AGATATTATGTTGTCTTCAGTGGAACTGCGTAGGGAGACGGCGGAAGGCG
AGTCTGTGTGGTTGGCCTCGGAGAAGCCACCTCCCCGCAGGGCTTTGCTT
CGGATTGCACCGACCGGAGCAGTGA

protein sequence of rna3976

>rna3976-protein ID=rna3976-protein|Name=rna3976|organism=Nannochloropsis gaditana|type=polypeptide|length=364bp
MRRHATSVVPAAVNNFSSASLPKAKISLSRLCKDLILRMATMLPVSDRKE
IMAQWMAQESSIYTDIATVENQLLRMRLEVETAKASHVSALQEVERLRER
ITFQTKIKPEDSSHPVLGQLIADMGYKKVYCATINQLADVPIWEKQRILR
RERAESIAREKMRQSFPVKLPGIITLYQLADKQYKLLDGQHRLAALKILA
DSGIISKDNNFCLLEVFTLEKESEARALFLEINSAMPVKLIDLPDGGARP
DIKGIIDGAVDNLVSQFPAFFKSSLNPKLPHVNIDNMRDALFQHHIVERH
GHKSAVELLKWLQDANENLSTKHDRDWKRIFKGRNPLVIEKAVAKAKKGG
FYLGLDNRWLAFEG

mRNA from alignment at CM002462.1:539313..541498+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3976 ID=rna3976|Name=rna3976|organism=Nannochloropsis gaditana|type=mRNA|length=2186bp|location=Sequence derived from alignment at CM002462.1:539313..541498+ (Nannochloropsis gaditana)
GCTAAGATTCACATCGAGCAAGGACGGGAAGTAGTTGATCCCATAGTTTC
TTGAAGCCCGCTCGCTCACAGACCCCTCTCTCGCCAACTTATCTTCAGTG
CCACCATTCTACCCATCGACAATCTCACACAGATAGGCCCCGTGCGTAGA
TATGCGGCGCCACGCAACTTCTGTTGTACCAGCCGCTGTAAATAATTTCT
CGTCCGCATCATTGCCCAAGGCCAAAATAAGCCTGTCGAGGCTTTGCAAG
GATTTGATTCTGCGCATGGCCACCATGTTACCGGTAAGCGACCGCAAGGA
AATAATGGCCCAGTGGATGGCACAGGAAAGCTCAATTTACACAGATATTG
CAACTGTCGAAAATCAACTTTTGCGCATGCGattggaggtggagacggcG
AAGGCTTCCCACGTTTCGGCACTTCAAGAAGTGGAGCGACTGAGGTGAGA
GTCGAGGCTGGAGCGATTCCTCCGAAAGCCACTGATTTTCCATGACATGT
TGATATTTATTAACGGCCCATGTGAAATGTGAATACCCAGTAAATAGAAC
ACATTGTACTGATAGCTACAATTCATCATCCCTTCAGGGAACGAATTACG
TTTCAAACTAAGATAAAACCCGAGGACTCGAGTCATCCCGTTCTCGGACA
ACTAATTGCTGACATGGGCTACAAAAAAGTATACTGTGCCACGATCAACC
AGCTAGCTGATGTTCCCATATGGGAGAAGCAACGAATACTCAGGCGGGAA
AGAGCAGAATCCATCGCACGTGAAAAGATGCGACAATCCTTTCCTGTAAA
GTTGCCGGGCATTATTACATTATATCAGCTTGCAGACAAACAATACAAGC
TCTTGGACGGGCAGCATCGACTAGCTGCTTTGAAAATTCTTGCCGACTCT
GGCATTATTAGTAAAGACAATAATTTCTGCCTTCTGGAAGTGTTCACGTT
GGAGAAAGAATCCGAGGCCCGCGCTCTATTTCTTGAGATCAACAGTGCCA
TGCCAGTCAAGCTGATTGATTTGCCCGATGGTGGAGCGCGGCCGGATATT
AAAGGGATTATTGACGGTGCAGTGGATAACCTCGTGTCTCAATTCCCGGC
ATTTTTCAAAAGCAGCTTGAATCCCAAGCTCCCACATGTCAACATTGACA
ATATGCGCGACGCCCTTTTTCAGGTGAGCCACATATTATACAAGACGTGT
TTGGTACAATAACGACTTTGCGTGCGAAATCAATCAGTAGACATAGACGC
TCTGGGTCCTCTCCAACATGGTGAGTTACGTTCATTATTTCCTTCGCATT
CTAGCACCACATTGTCGAGCGTCACGGACACAAGAGTGCAGTCGAACTGT
TAAAATGGCTGCAAGATGCGAACGAGAATCTCTCAACAAAGCACGATCGA
GACTGGAAACGCATCTTCAAAGGTCGTAATCCGCTTGTGATAGAAAAAGC
TGTAGCGAAGGCGAAAAAGGGTGGCTTTTACCTCGGCCTGGACAACCGGT
GGCTCGCTTTCGAAGGATAATAAACCTGTGCCTTGACTTTAATCCATGTC
CCAATGCGATGCATAATGCCTTACAAAAATGCAGTCTTGAAAGGAATGTG
GCACCATCGGGTGGAGAGGCAGGCGTAGCTTCTCTTGGCTTTTTGAAGCA
CATGCCCTTTCCGCTTGTGACCCGATTTCTGTTAGGCAAATCCTGGGCTA
AGGACCGACAAGCTTTTCGAAAAAGCTATTCCTGTATACAAGATGAGGCG
CGAACAACATAACGCTTGAGCTATACCGCTAATGAAGGTGCATTGAAGAA
ATTCCCGACGCCTTTCGTCGGGCGTATTGCGAGCCAGAAAATCTGATATT
GCTTGTTGTGCATTACAATATTCCTCAAGCGAACTACTGGTTCTTTGTAC
TGGTAGCAATTTTACCGTTCGCTGCTTCATAGTTTATTTTCAGTATACAT
CTTGTGAGTTTCCTCCAGCAAATCTCGGCATGGAATTACAGCTTTTAGCT
TGATACAGAGCAGAAATGCTCCCGCGAGCTTCCGGTGTAGAGAGTAGGCT
TCTCGAGGTGGGGGAGTAAGGCGATGATTCATGAATGTTTTGCCGTGATG
CGATATTCGCACAGTCATGTTGCTTCCGTGAAAGTCGAACGGCTCGTGAT
TTACGAAGGGTTCGCCTACGACAAGCCCGGCGCTCT

Coding sequence (CDS) from alignment at CM002462.1:539313..541498+

>rna3976 ID=rna3976|Name=rna3976|organism=Nannochloropsis gaditana|type=CDS|length=3285bp|location=Sequence derived from alignment at CM002462.1:539313..541498+ (Nannochloropsis gaditana)
ATGCGGCGCCACGCAACTTCTGTTGTACCAGCCGCTGTAAATAATTTCTC
GTCCGCATCATTGCCCAAGGCCAAAATAAGCCTGTCGAGGCTTTGCAAGG
ATTTGATTCTGCGCATGGCCACCATGTTACCGGTAAGCGACCGCAAGGAA
ATAATGGCCCAGTGGATGGCACAGGAAAGCTCAATTTACACAGATATTGC
AACTGTCGAAAATCAACTTTTGCGCATGCGattggaggtggagacggcGA
AGGCTTCCCACGTTTCGGCACTTCAAGAAGTGGAGCGACTGAGGGAACGA
ATTACGTTTCAAACTAAGATAAAACCCGAGGACTCGAGTCATCCCGTTCT
CGGACAACTAATTGCTGACATGGGCTACAAAAAAGTATACTGTGCCACGA
TCAACCAGCTAGCTGATGTTCCCATATGGGAGAAGCAACGAATACTCAGG
CGGGAAAGAGCAGAATCCATCGCACGTGAAAAGATGCGACAATCCTTTCC
TGTAAAGTTGCCGGGCATTATTACATTATATCAGCTTGCAGACAAACAAT
ACAAGCTCTTGGACGGGCAGCATCGACTAGCTGCTTTGAAAATTCTTGCC
GACTCTGGCATTATTAGTAAAGACAATAATTTCTGCCTTCTGGAAGTGTT
CACGTTGGAGAAAGAATCCGAGGCCCGCGCTCTATTTCTTGAGATCAACA
GTGCCATGCCAGTCAAGCTGATTGATTTGCCCGATGGTGGAGCGCGGCCG
GATATTAAAGGGATTATTGACGGTGCAGTGGATAACCTCGTGTCTCAATT
CCCGGCATTTTTCAAAAGCAGCTTGAATCCCAAGCTCCCACATGTCAACA
TTGACAATATGCGCGACGCCCTTTTTCAGCACCACATTGTCGAGCGTCAC
GGACACAAGAGTGCAGTCGAACTGTTAAAATGGCTGCAAGATGCGAACGA
GAATCTCTCAACAAAGCACGATCGAGACTGGAAACGCATCTTCAAAGGTC
GTAATCCGCTTGTGATAGAAAAAGCTGTAGCGAAGGCGAAAAAGGGTGGC
TTTTACCTCGGCCTGGACAACCGGTGGCTCGCTTTCGAAGGATAAATGCG
GCGCCACGCAACTTCTGTTGTACCAGCCGCTGTAAATAATTTCTCGTCCG
CATCATTGCCCAAGGCCAAAATAAGCCTGTCGAGGCTTTGCAAGGATTTG
ATTCTGCGCATGGCCACCATGTTACCGGTAAGCGACCGCAAGGAAATAAT
GGCCCAGTGGATGGCACAGGAAAGCTCAATTTACACAGATATTGCAACTG
TCGAAAATCAACTTTTGCGCATGCGattggaggtggagacggcGAAGGCT
TCCCACGTTTCGGCACTTCAAGAAGTGGAGCGACTGAGGGAACGAATTAC
GTTTCAAACTAAGATAAAACCCGAGGACTCGAGTCATCCCGTTCTCGGAC
AACTAATTGCTGACATGGGCTACAAAAAAGTATACTGTGCCACGATCAAC
CAGCTAGCTGATGTTCCCATATGGGAGAAGCAACGAATACTCAGGCGGGA
AAGAGCAGAATCCATCGCACGTGAAAAGATGCGACAATCCTTTCCTGTAA
AGTTGCCGGGCATTATTACATTATATCAGCTTGCAGACAAACAATACAAG
CTCTTGGACGGGCAGCATCGACTAGCTGCTTTGAAAATTCTTGCCGACTC
TGGCATTATTAGTAAAGACAATAATTTCTGCCTTCTGGAAGTGTTCACGT
TGGAGAAAGAATCCGAGGCCCGCGCTCTATTTCTTGAGATCAACAGTGCC
ATGCCAGTCAAGCTGATTGATTTGCCCGATGGTGGAGCGCGGCCGGATAT
TAAAGGGATTATTGACGGTGCAGTGGATAACCTCGTGTCTCAATTCCCGG
CATTTTTCAAAAGCAGCTTGAATCCCAAGCTCCCACATGTCAACATTGAC
AATATGCGCGACGCCCTTTTTCAGCACCACATTGTCGAGCGTCACGGACA
CAAGAGTGCAGTCGAACTGTTAAAATGGCTGCAAGATGCGAACGAGAATC
TCTCAACAAAGCACGATCGAGACTGGAAACGCATCTTCAAAGGTCGTAAT
CCGCTTGTGATAGAAAAAGCTGTAGCGAAGGCGAAAAAGGGTGGCTTTTA
CCTCGGCCTGGACAACCGGTGGCTCGCTTTCGAAGGATAAATGCGGCGCC
ACGCAACTTCTGTTGTACCAGCCGCTGTAAATAATTTCTCGTCCGCATCA
TTGCCCAAGGCCAAAATAAGCCTGTCGAGGCTTTGCAAGGATTTGATTCT
GCGCATGGCCACCATGTTACCGGTAAGCGACCGCAAGGAAATAATGGCCC
AGTGGATGGCACAGGAAAGCTCAATTTACACAGATATTGCAACTGTCGAA
AATCAACTTTTGCGCATGCGattggaggtggagacggcGAAGGCTTCCCA
CGTTTCGGCACTTCAAGAAGTGGAGCGACTGAGGGAACGAATTACGTTTC
AAACTAAGATAAAACCCGAGGACTCGAGTCATCCCGTTCTCGGACAACTA
ATTGCTGACATGGGCTACAAAAAAGTATACTGTGCCACGATCAACCAGCT
AGCTGATGTTCCCATATGGGAGAAGCAACGAATACTCAGGCGGGAAAGAG
CAGAATCCATCGCACGTGAAAAGATGCGACAATCCTTTCCTGTAAAGTTG
CCGGGCATTATTACATTATATCAGCTTGCAGACAAACAATACAAGCTCTT
GGACGGGCAGCATCGACTAGCTGCTTTGAAAATTCTTGCCGACTCTGGCA
TTATTAGTAAAGACAATAATTTCTGCCTTCTGGAAGTGTTCACGTTGGAG
AAAGAATCCGAGGCCCGCGCTCTATTTCTTGAGATCAACAGTGCCATGCC
AGTCAAGCTGATTGATTTGCCCGATGGTGGAGCGCGGCCGGATATTAAAG
GGATTATTGACGGTGCAGTGGATAACCTCGTGTCTCAATTCCCGGCATTT
TTCAAAAGCAGCTTGAATCCCAAGCTCCCACATGTCAACATTGACAATAT
GCGCGACGCCCTTTTTCAGCACCACATTGTCGAGCGTCACGGACACAAGA
GTGCAGTCGAACTGTTAAAATGGCTGCAAGATGCGAACGAGAATCTCTCA
ACAAAGCACGATCGAGACTGGAAACGCATCTTCAAAGGTCGTAATCCGCT
TGTGATAGAAAAAGCTGTAGCGAAGGCGAAAAAGGGTGGCTTTTACCTCG
GCCTGGACAACCGGTGGCTCGCTTTCGAAGGATAA

Synonyms

Publications