rna3974, rna3974 (mRNA) Nannochloropsis gaditana

Overview
Namerna3974
Unique Namerna3974
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length783
Alignment locationCM002462.1:538168..539043 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g146.8238.mrna
Orig protein idgnl|cribi|Naga_100001g146.8238
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:538168..539043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g146gene3823Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3974rna3974-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26727.1cds3964Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3974 ID=rna3974|Name=rna3974|organism=Nannochloropsis gaditana|type=mRNA|length=783bp
ATGACTCCCGTGTCCGTGGGAGGCACAAAGCTACCCACACACCTAGTTGC
CATAACCTTGAATGAATTATATACTGATTCTTGCTTCGGTGAAGTTTTGG
AGAATGTGGCTTGGAAAGTCCTAGCTTTTTATCTCAGACATGCAATGCTA
TCAGGAAAGATTTACCCGACAGATTCCTGCACGTACCCTATTGCCTCTTT
GCATGCATCACCCCGTCTTTCAGAGAGTACCTCTTTGGGAACAGCGGCCA
TATTTTCTCTTTGGCTATCCCTTGTGCTCATGGTTTCTCGCCCCTGGTTG
CACAGGATGATAAGTGCATTGAAACGTATCGCCTCGGCTCCTGTGCCGAA
ACGACAGGCTTTGGGCGTGCTGTCGACTGCGCGCCATCTGGGGACACTGG
GGGAGGAGCTGAAAAGTGCCCCAAGCAAAGAAGACGAAGCAAAGTACGCG
AAAGTTATCAAAGTGGGAGACAAGCTCTATGGCGTGCCCGCGGTACAGGA
AGGTACCTTTGGACATGACCTTCAGCAGCAGGTCGGGCGGCGGTTTGAGG
AGCTTGTTTACGAGCTCAACGGTGAGGTGCTGTTCAATCGTGATCCAGTT
TTCGCGCTTCCCGATCAAGGAACCAAGAGCAACCCCGTGTTGGTACCTTC
TGGAGAAAACGAGCGCATTGTAGGCTACGAAGACCCGCACGTGCACCAGG
TCTTCTGGTTCAAGCTGCGTAAAGGCGACCTTGTCTACGTTCCTAAGATC
GATAAGTACTTTTCTCTTTACAAGATTGATTAA
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protein sequence of rna3974

>rna3974-protein ID=rna3974-protein|Name=rna3974|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MSGPHISERVVFFMGRVRGATRELPGEGSLLGYAAFCVLEPREIPRYVKE
ILFPFCRAAIIVPCLYLSRRRKNGISRDTRFLVGQFGREARSGRPTPCCL
WMAKTRRGHTVTTSGSLSFLMGLRMARHNLSWFNLNVRTQQLCDRLLVAR
RVRQQNGDYSRFWPLPLFRVAPPLLFGLLVWRVCSKILANEADGVHTIVF
IGTISQLLCCRDICKDILSMFRTR
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mRNA from alignment at CM002462.1:538168..539043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3974 ID=rna3974|Name=rna3974|organism=Nannochloropsis gaditana|type=mRNA|length=876bp|location=Sequence derived from alignment at CM002462.1:538168..539043- (Nannochloropsis gaditana)
ATGAGCGGGCCTCACATATCAGAAAGAGTGGTTTTCTTCATGGGAAGGGT
GCGTGGCGTGGGTGCCCCCCTGACTTTAAGTGAGAGAGAAGCATACCCGC
GAAGGCTACAAGGGAGTTGCCAGGCGAAGGGTCGCTTTTGGGCTACGCGG
CGTTCTGCGTACTAGAGGTGAGCCTTGGCGGTAGCACCTCGTGAAAAGCA
TCACAGATCCATTACTTTCCCTTCCCTCTTCTTTTTCTTAAAACCCTTTC
CCTGCTTCTTAGCCTAGGGAAATTCCCCGGTACGTGAAAGAAATTTTGTT
CCCCTTTTGTCGCGCTGCAATAATTGTGCCTTGCTTGTATCTGAGTCGTC
GACGCAAAAATGGCATATCTCGCGACACACGTTTTCTTGTAGGACAATTT
GGGCGAGAGGCCAGGTCTGGACGACCCACCCCTTGCTGTTTGTGGATGGC
CAAGACGCGACGTGGGCACACTGTGACTACGTCGGGGAGCCTCTCATTTT
TGATGGGACTACGAATGGCGAGGCACAATTTGTCATGGTTCAATCTCAAT
GTGCGAACGCAACAGTTATGCGACCGTCTGCTCGTTGCAAGGCGAGTAAG
GCAACAGAACGGGGATTACTCTCGCTTCTGGCCCCTTCCTTTATTTAGGG
TTGCGCCACCTCTTCTGTTTGGTCTCCTTGTCTGGCGAGTCGACAAATGT
ATACAGTGAAATTGCGGTATTTTTCCGCGTATTTGGTTCTTGTCTAGGTG
TGTTCAAAAATTTTAGCAAACGAGGCAGACGGCGTGCATACGATAGTCTT
TATCGGCACCATTTCACAACTGCTTTGTTGTCGTGACATTTGCAAAGACA
TCCTGTCCATGTTTCGCACAAGGTAA
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Coding sequence (CDS) from alignment at CM002462.1:538168..539043-

>rna3974 ID=rna3974|Name=rna3974|organism=Nannochloropsis gaditana|type=CDS|length=2700bp|location=Sequence derived from alignment at CM002462.1:538168..539043- (Nannochloropsis gaditana)
GTGTGTTCAAAAATTTTAGCAAACGAGGCAGACGGCGTGCATACGATAGT
CTTTATCGGCACCATTTCACAACTGCTTTGTTGTCGTGACATTTGCAAAG
ACATCCTGTCCATGTTTCGCACAAGGTAACCTAGGGAAATTCCCCGGTAC
GTGAAAGAAATTTTGTTCCCCTTTTGTCGCGCTGCAATAATTGTGCCTTG
CTTGTATCTGAGTCGTCGACGCAAAAATGGCATATCTCGCGACACACGTT
TTCTTGTAGGACAATTTGGGCGAGAGGCCAGGTCTGGACGACCCACCCCT
TGCTGTTTGTGGATGGCCAAGACGCGACGTGGGCACACTGTGACTACGTC
GGGGAGCCTCTCATTTTTGATGGGACTACGAATGGCGAGGCACAATTTGT
CATGGTTCAATCTCAATGTGCGAACGCAACAGTTATGCGACCGTCTGCTC
GTTGCAAGGCGAGTAAGGCAACAGAACGGGGATTACTCTCGCTTCTGGCC
CCTTCCTTTATTTAGGGTTGCGCCACCTCTTCTGTTTGGTCTCCTTGTCT
GGCGAGCTACAAGGGAGTTGCCAGGCGAAGGGTCGCTTTTGGGCTACGCG
GCGTTCTGCGTACTAGAGATGAGCGGGCCTCACATATCAGAAAGAGTGGT
TTTCTTCATGGGAAGGGTGCGTGGCGTGTGTTCAAAAATTTTAGCAAACG
AGGCAGACGGCGTGCATACGATAGTCTTTATCGGCACCATTTCACAACTG
CTTTGTTGTCGTGACATTTGCAAAGACATCCTGTCCATGTTTCGCACAAG
GTAACCTAGGGAAATTCCCCGGTACGTGAAAGAAATTTTGTTCCCCTTTT
GTCGCGCTGCAATAATTGTGCCTTGCTTGTATCTGAGTCGTCGACGCAAA
AATGGCATATCTCGCGACACACGTTTTCTTGTAGGACAATTTGGGCGAGA
GGCCAGGTCTGGACGACCCACCCCTTGCTGTTTGTGGATGGCCAAGACGC
GACGTGGGCACACTGTGACTACGTCGGGGAGCCTCTCATTTTTGATGGGA
CTACGAATGGCGAGGCACAATTTGTCATGGTTCAATCTCAATGTGCGAAC
GCAACAGTTATGCGACCGTCTGCTCGTTGCAAGGCGAGTAAGGCAACAGA
ACGGGGATTACTCTCGCTTCTGGCCCCTTCCTTTATTTAGGGTTGCGCCA
CCTCTTCTGTTTGGTCTCCTTGTCTGGCGAGCTACAAGGGAGTTGCCAGG
CGAAGGGTCGCTTTTGGGCTACGCGGCGTTCTGCGTACTAGAGATGAGCG
GGCCTCACATATCAGAAAGAGTGGTTTTCTTCATGGGAAGGGTGCGTGGC
GTGTGTTCAAAAATTTTAGCAAACGAGGCAGACGGCGTGCATACGATAGT
CTTTATCGGCACCATTTCACAACTGCTTTGTTGTCGTGACATTTGCAAAG
ACATCCTGTCCATGTTTCGCACAAGGTAACCTAGGGAAATTCCCCGGTAC
GTGAAAGAAATTTTGTTCCCCTTTTGTCGCGCTGCAATAATTGTGCCTTG
CTTGTATCTGAGTCGTCGACGCAAAAATGGCATATCTCGCGACACACGTT
TTCTTGTAGGACAATTTGGGCGAGAGGCCAGGTCTGGACGACCCACCCCT
TGCTGTTTGTGGATGGCCAAGACGCGACGTGGGCACACTGTGACTACGTC
GGGGAGCCTCTCATTTTTGATGGGACTACGAATGGCGAGGCACAATTTGT
CATGGTTCAATCTCAATGTGCGAACGCAACAGTTATGCGACCGTCTGCTC
GTTGCAAGGCGAGTAAGGCAACAGAACGGGGATTACTCTCGCTTCTGGCC
CCTTCCTTTATTTAGGGTTGCGCCACCTCTTCTGTTTGGTCTCCTTGTCT
GGCGAGCTACAAGGGAGTTGCCAGGCGAAGGGTCGCTTTTGGGCTACGCG
GCGTTCTGCGTACTAGAGATGAGCGGGCCTCACATATCAGAAAGAGTGGT
TTTCTTCATGGGAAGGGTGCGTGGCGTGTGTTCAAAAATTTTAGCAAACG
AGGCAGACGGCGTGCATACGATAGTCTTTATCGGCACCATTTCACAACTG
CTTTGTTGTCGTGACATTTGCAAAGACATCCTGTCCATGTTTCGCACAAG
GTAACCTAGGGAAATTCCCCGGTACGTGAAAGAAATTTTGTTCCCCTTTT
GTCGCGCTGCAATAATTGTGCCTTGCTTGTATCTGAGTCGTCGACGCAAA
AATGGCATATCTCGCGACACACGTTTTCTTGTAGGACAATTTGGGCGAGA
GGCCAGGTCTGGACGACCCACCCCTTGCTGTTTGTGGATGGCCAAGACGC
GACGTGGGCACACTGTGACTACGTCGGGGAGCCTCTCATTTTTGATGGGA
CTACGAATGGCGAGGCACAATTTGTCATGGTTCAATCTCAATGTGCGAAC
GCAACAGTTATGCGACCGTCTGCTCGTTGCAAGGCGAGTAAGGCAACAGA
ACGGGGATTACTCTCGCTTCTGGCCCCTTCCTTTATTTAGGGTTGCGCCA
CCTCTTCTGTTTGGTCTCCTTGTCTGGCGAGCTACAAGGGAGTTGCCAGG
CGAAGGGTCGCTTTTGGGCTACGCGGCGTTCTGCGTACTAGAGATGAGCG
GGCCTCACATATCAGAAAGAGTGGTTTTCTTCATGGGAAGGGTGCGTGGC
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Synonyms
Publications