rna3971, rna3971 (mRNA) Nannochloropsis gaditana

Overview
Namerna3971
Unique Namerna3971
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2890
Alignment locationCM002462.1:533800..536047 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g149.8174.mrna
Orig protein idgnl|cribi|Naga_100001g149.8174
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:533800..536047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g149gene3820Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3971rna3971-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26663.1cds3961Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3971 ID=rna3971|Name=rna3971|organism=Nannochloropsis gaditana|type=mRNA|length=2890bp
AGGTTGACATAGTGAAGGATTGCACCGACTGTTGCTCGGAAATTCTCGAG
GATATGGTAACAGCCACGAAGCAACAGTCGTAACATTCACAAGATCGGGA
CACGCATAGCTCTTCCTTCTCTGCGCAGCTTTGTTCTCCTTCCTTTTCAC
ACATTGTGACGCTGTCCATGATGAGAGCATCCTAGCGTAGATTATACTTG
CCCCAGGGTAATTGTGCCAGCGCCCCACCAATCAGGGGATAGTGACCTCA
TTTCGGGCTGTGCATCCGTCTGATACACACACAGGGCTGAGAAGGTAGAG
GCAGGCGATCGCGGCTCATCTTTCCCTCTCAGGGTAACGCACGCATCAAA
GCAGCAAGACTGCGTACCATAGAAGGGGCTAAGTGGATCATCACATCTAG
ACGAAAAATCAAGTTTGCGAAATGTCGTCTCCGGGCAGAGCCAAAGCTCT
TGTTTTTTCGCTCATAGGAGTAAGCGTCCTGGCAGGCCTCACGGTTGCCC
TGTTAGGAATCTATGGACAGGGGATTTTCCCCAAAAAAGACAAAAATGGA
TGGCACGACCCGAGGCTCAGTTATGTGAAAACACCCAGTCTGGACGAGCT
AAGGGCAACTTTCGTTCCGGACACATGCTTCGACTCCTTCGATCTCGCCT
GGAGTTCGGGCAAGGATGGTCAGATATACGCCAACACAGCACCCTTCTTT
GTCAAAGGCATCAGTTGGTTTGGATGCGAGGGTCATGGATATACGTTCAC
CGGCCTGAACTTCACCACTGTGGACACAATCTTAAACTTCTTCCTGCAGC
ACAAGTTCAACACGGTTCGCATCCCGGTTTCAGTGGCCTTCGGGTTAGCG
CCAAAGGACTTTAAGCCAAATCAGCGCTTCGTGGGAAAAGGACTAAAGGG
CAAGACTATCTGGGAGATCTTGGACGAGGTGATAGACCAGGCTGCGTTAC
GAGGGCTGATGGTGATGCTCGACATGCACACCCTGGGCCCCCAGGAGGCC
ACGGATCTTTGGTACGACGAGCAATACAAAGAGGCGGACATCCTGCAGGC
ATGGAGTAATATAATGGCTGCATACTCTATTAAATGGAATGTTTTTGCTC
TGGACCTGAAAAACGAGCCTCACGGCATCGCTACTTGGGGCGTTAGTGCG
CCTCAGACGGATTACAATAAGTTCTACGAGCGCGCCATTGCACACATTCA
CACCCAGTTTCCGAACTGGAAGGGCTTGTACATGGTTGAGGGTGTGCAAT
ATAACAAAGAGACGGACAAGGTGACCGATTATCCGTTCTGGTGGGGCGGG
AATTTCGGTGGTGCAATTCAACATCCTATATACGTGCCGGTACCCGAGGT
CATGAACAGGGTAGTTTACTCGCCGCACGTGTACGGGCCCGACGTGTACG
ATCACCCGTACATGAACGTTCCAGCAGCAGAGCTGGCTAACGAGCTTGTT
AAGGTGTGGGACTCACAGATGGGCTGGCTTATTCCGAAGCTGCAGAAGGG
CATGATTATCGGAGAGTGGGGCGGGTCGCTGAAAGGGCGTGATGAGATTG
TTCAGACAGAGTTGGCCAAGTGGCTGGTAAAGAATTGCATGGCTAATAAC
GTCTGGTGGGCAATAAACCCTGAGTCGTCGGACACGGGCGGCATTATGGC
CTGGAATTGGAAGACGTACGACAAACGGCGCTTGGACTTGGTTGACTCGA
TTTTCCCGGACCCCACCCAGTTCGGTATCAAGCATTCCAAGCTCTGTCTG
CGATTTGGTACCTATCCCAACCCGCAGTGTCCAGTTCAACCCTTTCACAG
CCCTGAGGTTGCCACCCCCCAGAAATTACGGCATTAAAATGCCTCGAGTC
AACCGGAGCACTCAGACTACTTTGGGTAGGTGAGGCAAAATGCGGGTAGA
TATCTTAAAGCATGATTCGAGGCGGTGTGTAGGCACAGACAAGCACACGC
TCTCGTATAAAACCTTGTAATCTATCTGTAGCTCTGGGCGTTATACGACA
AAACATACGCTGCTGCGCACAAATGCGGTGCGCAAATAATGGTGCAAACC
TTATGCGCACCTCGAACTTCAAGCAAAGATCTCTGTGACCTTTGGGCTGA
ATCTCCTCCCAAAATAATGGCAAGTGTAGTGGGAGGAATAGAAATACAAC
TACAGAAGGGAAGGTCGACGTGTACTCTTTCTTTGGGTTGAAAGTCCAGT
ATAGAACAGTCGGATAGGACCTCGGGTCGTACAATTGATAATCGTTCTGC
TTTCGTCGTTGCACCCATACCAGTGTTGTGTAAAAGGTGGGAGGAGATAG
AAAACCTGGGGCGACCGCACCTTATTATCTGTCTTTAAAAGTCGGACGAC
CGGAAACGGGAATGGGCAGGATCAAAAGGGAGCTGGGAAGGTCTCTGGGG
GGGCAGAGGCACGAATGTGATAGATTATTGTCTCATGTTGAGATCAATTA
AAAAAGTTGGATCATACTACTGTGAAATTAGAGGAAGTGATCACACATGA
GAGCAACGGGGCAGTATGTGGATGGTCATGTATGGTATGTGTTTCAAAGG
ATCGAAGGGAAACTTGAAGTTGAAATTAGTCTACTTGTCATCCTCCGGTA
GTAGCTGAAAATTCTTCGCTCTGCATGCATCATCACTGATTAAATTACAT
GGTTTTGATTGAAAGATGGATTTCCAGCGCACCCATGTGTAATCATGAAC
CCTCTCAGCTTCTGGCGCATCTTGAAGCTATATTAAATATGTGTTCGTCT
GTATGTTTACACAAAAGCACACGTACAAAGGTTTAATATACCATATGTCC
TGGGGGTACTTGGAAACATGCTTCCTTTCTTACTTAAGCAGCGAGCCTCC
TAGCTTGCGTTAGGTACCCTCTAATTCTATTAACTATGTC
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protein sequence of rna3971

>rna3971-protein ID=rna3971-protein|Name=rna3971|organism=Nannochloropsis gaditana|type=polypeptide|length=490bp
MRATKENYQSDRLRDRTESYPFPDEQDNDIPNRPTAHPLLRLSDQTEVLI
RNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLG
KTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYAT
FLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYW
EGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQER
KPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFK
DLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRP
AIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHGRGAGEGA
EFRRGDEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESGSAPRQREESD
EEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDDRPVRG
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mRNA from alignment at CM002462.1:533800..536047+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3971 ID=rna3971|Name=rna3971|organism=Nannochloropsis gaditana|type=mRNA|length=2248bp|location=Sequence derived from alignment at CM002462.1:533800..536047+ (Nannochloropsis gaditana)
TGATTTAACGCGAGTGCCACGGTACAGCCACCACGCACTGCCCTCACCTC CAtgtcagcccctccctcgcttcctccctccctccctccctcgctccatc gctccctcgctccctcgctccctccctaacctccctcctggcttccctcc ctccctacctccctccctccctcgcgtcctcgcttcctctctttctccct ccctccatctttccttcacccccttcctcactttCTGGCTACCTCcaccc ctcgctccccgcctcccttccactctggctccctctctcgcttcctccct ccctccctccgggcgGCGAGCGAGTGCACTGCCGAGGCGATGAGGGGGGC AAAGTGCTTCATCTCGCGTCATTTCCTATTCCATGCGAATTCAAGTATGC TGACTTTCTGCCACAAATAGAGAGGTGGTAGAACCAAGGAAATGCGCGCG ACGAAGGAAAATTACCAAAGCGACCGTCTTCGGGATCGCACGGAGAGCTA TCCTTTCCCGGATGAGCAGGATAATGATATTCCAAATCGCCCGACAGCCC ATCCATTACTGCGTCTCTCAGACCAGACTGAAGTTCTCATACGTAACGAC TCAAGAGTAGGATACCCTGTCGAACAGCCGGATGTGGGACCGGAAAGGTA ATTTATTGACGGGGAAATAGTCAGCAACATATTATCTCTTAAAGCAGGAG TACGGTAGTATGGACTGCGATCCTCCATTGGCAGATGGCGTTTAACCCAT CAGCAAGCCTGGCATGTCTGATCCAGCGGTAATTACTCATTTGATATCGA CTCATTTCGATCACTCCACCACTTCACGCCTCAGTTTTGGTTGGCTGTTC CCCGCGCAGCAGATTCTATTGAACTATGTGCTCCAGGAAGGGACAAGAAT AGTTGTGCAGCTCGGCGCTTACCTGGGAAAAACAACATTGTTCATCGCGG AGCATGCCCCTCGCGCTTTGATTTTTGTCATCGATCCCTGGGACAATGCC GCACTCAAAGCTGAGCCGTCTTTGAACAAAAATTTTGCCAACATCGACCT TTTCGAGCGCATTCCTTTCTATGCCACTTTCCTCCGGAACACTTGGCATT TAGCGGCACGGCGTGGATCGAACAAAGACAATCTTCTCGTTGGTGTTGTA CCATTACGCATGAAATTTGAAGAGGGCATTGCTTTGCTAAAGTCTACACT CAACCTGCGCCCAGATGTTCTGTACTGGGAGGGCTTTCCCAACGAGACGG GTCTGTCTCAGACACTGCACGCTGTGAAGGAGGCATTTCCAGGCGTGGTA GTTGTAGGTGATGGTTACAATTATTCGGAAGTACAGAAGGGCCTCGCTAA GGCTAGCAGATCTCTGTTCCAGGAGCGCAAGCCTTTCGTGGAGATGGGCA AATGCTGGACTTTCCTGCGTCTGAAAAAAGAGATGTTGTCTGATTTGAGA TTGAAGTACACAGCCGCTGACAACAGAGCTAAGCGCACCATACTGAGAGA CAAAGAAGTAGCGGGGGCTTCTTTCAAAGACTTGCTTTCTGGGCTAAAGT CGAAGAGCCAGCAGCTCAAATACGAGGAGGCTGGAGAGCGGGCAGCGAGG CGTAtggccgaggaagaggagagggacagggtCATGCAAGGGCGGGAATC GGGGGAGACAAGGCGACGTAACAGGCCAGCAATCCAAGGAATcggggaga aaggcggaggggtaATACGGATAAGCAAAATGTacggaggagaaagtgga cGAGGTCGCGGGAGTCGGAGGATAGGGGGATATGGGGGATGCGACCAGCA GCATggcagaggggcgggggaaggagctgaGTTTCGACGTGGAGATGAGC AGGGCATGGGACGCGGAGTCAGTCGGCATCGCAGCCCGAGCCAAAGTTCG AGgccggaaaaggaggcgccGTCGGGCACCACCATGGGGGAGAGCGGTTC CGCACCgcggcagagggaggaaagcgacgaggaagggaggcgacACTGGA AGCGGAGGTGCTTCCGAAATGAGATTGATGAGAGCGAAGATGACGAGGCG AGAGGTGAGAGCACCGAGGAAGTGGACGATGACCGCCCAGTCCGGGGCTa aagaaacaaaaaaatgCTGTCTAATGCGACGGGGCTGGCTGGCAAAAGAG GCCTTAAATGATGTTGTCCATCTTCTCGGCAAACACCACTTCCCAACCAC ATCTTCTGAGACAAGCTTTTATCGTACACCCGAGACATAATTCTCACC
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Coding sequence (CDS) from alignment at CM002462.1:533800..536047+

>rna3971 ID=rna3971|Name=rna3971|organism=Nannochloropsis gaditana|type=CDS|length=2946bp|location=Sequence derived from alignment at CM002462.1:533800..536047+ (Nannochloropsis gaditana)
ATGCGCGCGACGAAGGAAAATTACCAAAGCGACCGTCTTCGGGATCGCAC
GGAGAGCTATCCTTTCCCGGATGAGCAGGATAATGATATTCCAAATCGCC
CGACAGCCCATCCATTACTGCGTCTCTCAGACCAGACTGAAGTTCTCATA
CGTAACGACTCAAGAGTAGGATACCCTGTCGAACAGCCGGATGTGGGACC
GGAAAGTTTTGGTTGGCTGTTCCCCGCGCAGCAGATTCTATTGAACTATG
TGCTCCAGGAAGGGACAAGAATAGTTGTGCAGCTCGGCGCTTACCTGGGA
AAAACAACATTGTTCATCGCGGAGCATGCCCCTCGCGCTTTGATTTTTGT
CATCGATCCCTGGGACAATGCCGCACTCAAAGCTGAGCCGTCTTTGAACA
AAAATTTTGCCAACATCGACCTTTTCGAGCGCATTCCTTTCTATGCCACT
TTCCTCCGGAACACTTGGCATTTAGCGGCACGGCGTGGATCGAACAAAGA
CAATCTTCTCGTTGGTGTTGTACCATTACGCATGAAATTTGAAGAGGGCA
TTGCTTTGCTAAAGTCTACACTCAACCTGCGCCCAGATGTTCTGTACTGG
GAGGGCTTTCCCAACGAGACGGGTCTGTCTCAGACACTGCACGCTGTGAA
GGAGGCATTTCCAGGCGTGGTAGTTGTAGGTGATGGTTACAATTATTCGG
AAGTACAGAAGGGCCTCGCTAAGGCTAGCAGATCTCTGTTCCAGGAGCGC
AAGCCTTTCGTGGAGATGGGCAAATGCTGGACTTTCCTGCGTCTGAAAAA
AGAGATGTTGTCTGATTTGAGATTGAAGTACACAGCCGCTGACAACAGAG
CTAAGCGCACCATACTGAGAGACAAAGAAGTAGCGGGGGCTTCTTTCAAA
GACTTGCTTTCTGGGCTAAAGTCGAAGAGCCAGCAGCTCAAATACGAGGA
GGCTGGAGAGCGGGCAGCGAGGCGTAtggccgaggaagaggagagggaca
gggtCATGCAAGGGCGGGAATCGGGGGAGACAAGGCGACGTAACAGGCCA
GCAATCCAAGGAATcggggagaaaggcggaggggtaATACGGATAAGCAA
AATGTacggaggagaaagtggacGAGGTCGCGGGAGTCGGAGGATAGGGG
GATATGGGGGATGCGACCAGCAGCATggcagaggggcgggggaaggagct
gaGTTTCGACGTGGAGATGAGCAGGGCATGGGACGCGGAGTCAGTCGGCA
TCGCAGCCCGAGCCAAAGTTCGAGgccggaaaaggaggcgccGTCGGGCA
CCACCATGGGGGAGAGCGGTTCCGCACCgcggcagagggaggaaagcgac
gaggaagggaggcgacACTGGAAGCGGAGGTGCTTCCGAAATGAGATTGA
TGAGAGCGAAGATGACGAGGCGAGAGGTGAGAGCACCGAGGAAGTGGACG
ATGACCGCCCAGTCCGGGGCTaaATGCGCGCGACGAAGGAAAATTACCAA
AGCGACCGTCTTCGGGATCGCACGGAGAGCTATCCTTTCCCGGATGAGCA
GGATAATGATATTCCAAATCGCCCGACAGCCCATCCATTACTGCGTCTCT
CAGACCAGACTGAAGTTCTCATACGTAACGACTCAAGAGTAGGATACCCT
GTCGAACAGCCGGATGTGGGACCGGAAAGTTTTGGTTGGCTGTTCCCCGC
GCAGCAGATTCTATTGAACTATGTGCTCCAGGAAGGGACAAGAATAGTTG
TGCAGCTCGGCGCTTACCTGGGAAAAACAACATTGTTCATCGCGGAGCAT
GCCCCTCGCGCTTTGATTTTTGTCATCGATCCCTGGGACAATGCCGCACT
CAAAGCTGAGCCGTCTTTGAACAAAAATTTTGCCAACATCGACCTTTTCG
AGCGCATTCCTTTCTATGCCACTTTCCTCCGGAACACTTGGCATTTAGCG
GCACGGCGTGGATCGAACAAAGACAATCTTCTCGTTGGTGTTGTACCATT
ACGCATGAAATTTGAAGAGGGCATTGCTTTGCTAAAGTCTACACTCAACC
TGCGCCCAGATGTTCTGTACTGGGAGGGCTTTCCCAACGAGACGGGTCTG
TCTCAGACACTGCACGCTGTGAAGGAGGCATTTCCAGGCGTGGTAGTTGT
AGGTGATGGTTACAATTATTCGGAAGTACAGAAGGGCCTCGCTAAGGCTA
GCAGATCTCTGTTCCAGGAGCGCAAGCCTTTCGTGGAGATGGGCAAATGC
TGGACTTTCCTGCGTCTGAAAAAAGAGATGTTGTCTGATTTGAGATTGAA
GTACACAGCCGCTGACAACAGAGCTAAGCGCACCATACTGAGAGACAAAG
AAGTAGCGGGGGCTTCTTTCAAAGACTTGCTTTCTGGGCTAAAGTCGAAG
AGCCAGCAGCTCAAATACGAGGAGGCTGGAGAGCGGGCAGCGAGGCGTAt
ggccgaggaagaggagagggacagggtCATGCAAGGGCGGGAATCGGGGG
AGACAAGGCGACGTAACAGGCCAGCAATCCAAGGAATcggggagaaaggc
ggaggggtaATACGGATAAGCAAAATGTacggaggagaaagtggacGAGG
TCGCGGGAGTCGGAGGATAGGGGGATATGGGGGATGCGACCAGCAGCATg
gcagaggggcgggggaaggagctgaGTTTCGACGTGGAGATGAGCAGGGC
ATGGGACGCGGAGTCAGTCGGCATCGCAGCCCGAGCCAAAGTTCGAGgcc
ggaaaaggaggcgccGTCGGGCACCACCATGGGGGAGAGCGGTTCCGCAC
CgcggcagagggaggaaagcgacgaggaagggaggcgacACTGGAAGCGG
AGGTGCTTCCGAAATGAGATTGATGAGAGCGAAGATGACGAGGCGAGAGG
TGAGAGCACCGAGGAAGTGGACGATGACCGCCCAGTCCGGGGCTaa
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Synonyms
Publications