EWM26663.1, cds3961 (CDS) Nannochloropsis gaditana

Overview
NameEWM26663.1
Unique Namecds3961
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:534241..534446 +
Alignment locationCM002462.1:534634..535900 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26663.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g149.8174.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:534241..534446 +
CM002462.1supercontigCM002462.1:534634..535900 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26663.1 vs. NCBI_GenBank
Match: gi|585108751|gb|EWM26663.1| (hypothetical protein Naga_100001g149 [Nannochloropsis gaditana])

HSP 1 Score: 1003.82 bits (2594), Expect = 0.000e+0
Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0
Query:    1 MRATKENYQSDRLRDRTESYPFPDEQDNDIPNRPTAHPLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQERKPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFKDLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRPAIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHGRGAGEGAEFRRGDEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESGSAPRQREESDEEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDDRPVRG 490
            MRATKENYQSDRLRDRTESYPFPDEQDNDIPNRPTAHPLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQERKPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFKDLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRPAIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHGRGAGEGAEFRRGDEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESGSAPRQREESDEEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDDRPVRG
Sbjct:    1 MRATKENYQSDRLRDRTESYPFPDEQDNDIPNRPTAHPLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESFGWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRSLFQERKPFVEMGKCWTFLRLKKEMLSDLRLKYTAADNRAKRTILRDKEVAGASFKDLLSGLKSKSQQLKYEEAGERAARRMAEEEERDRVMQGRESGETRRRNRPAIQGIGEKGGGVIRISKMYGGESGRGRGSRRIGGYGGCDQQHGRGAGEGAEFRRGDEQGMGRGVSRHRSPSQSSRPEKEAPSGTTMGESGSAPRQREESDEEGRRHWKRRCFRNEIDESEDDEARGESTEEVDDDRPVRG 490          
BLAST of EWM26663.1 vs. NCBI_GenBank
Match: gi|505062375|ref|WP_015249477.1| (class I SAM-dependent methyltransferase [Singulisphaera acidiphila] >gi|430018677|gb|AGA30391.1| hypothetical protein Sinac_6305 [Singulisphaera acidiphila DSM 18658])

HSP 1 Score: 92.0485 bits (227), Expect = 4.766e-16
Identity = 56/209 (26.79%), Postives = 101/209 (48.33%), Query Frame = 0
Query:   38 PLLRLSDQTEVLIRNDSRVGYPVEQPDVGPESF-GWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASRS 245
            P +  +D    ++   +R  +P E+P V P     WLFP+ Q +    + +  R++V++G++ G++T F+A+HAP AL+  ID W     +  P +  +   +    R+  Y TFL   W    R           VVP+R    EG+  +     LRPDV++ +   +   +   L    + FP   ++GD +N+  V++ + +A R+
Sbjct:  458 PPVATADAKPAVLEFLARHPWPSEKPKVPPPPIRNWLFPSTQAVFEETIPQDARVIVEVGSFTGRSTRFLADHAPTALVIAIDHW-----RGSPEMANDPEVVAFLPRL--YETFLAECWLFRDR-----------VVPVRRSSLEGLREVADA-GLRPDVIFIDADHSYEAVRADLACALDLFPQARIIGDDWNWGSVRQAVQEACRA 647          
BLAST of EWM26663.1 vs. NCBI_GenBank
Match: gi|1123616360|ref|WP_074306949.1| (class I SAM-dependent methyltransferase [Singulisphaera sp. GP187] >gi|1119032892|emb|SIO06122.1| Methyltransferase domain-containing protein [Singulisphaera sp. GP187])

HSP 1 Score: 83.1889 bits (204), Expect = 2.728e-13
Identity = 50/192 (26.04%), Postives = 95/192 (49.48%), Query Frame = 0
Query:   54 SRVGYPVEQPDVGPESF-GWLFPAQQILLNYVLQEGTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFANIDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLAKASR 244
            +R  +P ++P+V P     WLFP+ + +L   + E  R++V++G++ G++T F+ +HAP A++  ID W     +  P +  +   +    R+  Y TFL   W    R           V+P+R    EG+  + +   LRPDV++ +   +   +   L +  + FP   ++GD +N+  V++ +    R
Sbjct:  474 ARHPWPDKKPEVPPPPIRNWLFPSTREVLERTIPEDARVIVEVGSFTGRSTRFLTDHAPAAIVIAIDHW-----RGSPEMANDPELVAWLPRL--YETFLAECWLYRDR-----------VIPVRRSSVEGLQEVAAA-GLRPDVIFIDADHSYEAVRADLSSTLDLFPQARIIGDDWNWESVRQAVQAVCR 646          
BLAST of EWM26663.1 vs. NCBI_GenBank
Match: gi|551609184|ref|XP_005785813.1| (hypothetical protein EMIHUDRAFT_253146 [Emiliania huxleyi CCMP1516] >gi|485639022|gb|EOD33384.1| hypothetical protein EMIHUDRAFT_253146 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.4034 bits (176), Expect = 7.908e-11
Identity = 50/175 (28.57%), Postives = 82/175 (46.86%), Query Frame = 0
Query:   71 GWLFPAQQILLNYVLQE-GTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFAN----IDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLA 240
            GW+    + +L  +L+E   R VV+LG++ G  T  + E APR  +F +D WD   L A PSL + +      + + +    +A FL N W    R           V PLRM   +G+A + + L    D++Y +       +   L A    FP  ++ GD + +++VQ  +A
Sbjct:   16 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSLREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQLAVA 178          
BLAST of EWM26663.1 vs. NCBI_GenBank
Match: gi|551568683|ref|XP_005770297.1| (hypothetical protein EMIHUDRAFT_209892 [Emiliania huxleyi CCMP1516] >gi|485621424|gb|EOD17868.1| hypothetical protein EMIHUDRAFT_209892 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0182 bits (175), Expect = 1.934e-10
Identity = 49/175 (28.00%), Postives = 81/175 (46.29%), Query Frame = 0
Query:   71 GWLFPAQQILLNYVLQE-GTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFAN----IDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLA 240
            GW+    + +L  +L+E   R VV+LG++ G  T  + E APR  +F +D WD   L A PS  + +      + + +    +A FL N W    R           V PLRM   +G+A + + L    D++Y +       +   L A    FP  ++ GD + +++VQ  +A
Sbjct:   51 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSQREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQLAVA 213          
BLAST of EWM26663.1 vs. NCBI_GenBank
Match: gi|551575071|ref|XP_005773264.1| (hypothetical protein EMIHUDRAFT_241782 [Emiliania huxleyi CCMP1516] >gi|485624862|gb|EOD20835.1| hypothetical protein EMIHUDRAFT_241782 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0182 bits (175), Expect = 2.045e-10
Identity = 49/175 (28.00%), Postives = 81/175 (46.29%), Query Frame = 0
Query:   71 GWLFPAQQILLNYVLQE-GTRIVVQLGAYLGKTTLFIAEHAPRALIFVIDPWDNAALKAEPSLNKNFAN----IDLFERIPFYATFLRNTWHLAARRGSNKDNLLVGVVPLRMKFEEGIALLKSTLNLRPDVLYWEGFPNETGLSQTLHAVKEAFPGVVVVGDGYNYSEVQKGLA 240
            GW+    + +L  +L+E   R VV+LG++ G  T  + E APR  +F +D WD   L A PS  + +      + + +    +A FL N W    R           V PLRM   +G+A + + L    D++Y +       +   L A    FP  ++ GD + +++VQ  +A
Sbjct:   51 GWVHRGNERMLRRLLEERQPRCVVELGSWCGLCTTLLCEAAPRLAVFAVDLWDAPHLLATPSQREQYTCDAQAMAILQAGELHAAFLHNLWPHRTR-----------VFPLRMPTGDGLAAI-ARLGAPVDLIYVDADHTYAAVLADLRASARLFPDALLCGDDWCWADVQLAVA 213          
The following BLAST results are available for this feature:
BLAST of EWM26663.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585108751|gb|EWM26663.1|0.000e+0100.00hypothetical protein Naga_100001g149 [Nannochlorop... [more]
gi|505062375|ref|WP_015249477.1|4.766e-1626.79class I SAM-dependent methyltransferase [Singulisp... [more]
gi|1123616360|ref|WP_074306949.1|2.728e-1326.04class I SAM-dependent methyltransferase [Singulisp... [more]
gi|551609184|ref|XP_005785813.1|7.908e-1128.57hypothetical protein EMIHUDRAFT_253146 [Emiliania ... [more]
gi|551568683|ref|XP_005770297.1|1.934e-1028.00hypothetical protein EMIHUDRAFT_209892 [Emiliania ... [more]
gi|551575071|ref|XP_005773264.1|2.045e-1028.00hypothetical protein EMIHUDRAFT_241782 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3971rna3971Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications