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Properties
| Property Name | Value |
|---|
| Product | amino acid adenylation protein |
| Orig transcript id | gnl|cribi|Naga_100001g156.8259.mrna |
| Orig protein id | gnl|cribi|Naga_100001g156.8259 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:519847..524478 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3964 ID=rna3964|Name=rna3964|organism=Nannochloropsis gaditana|type=mRNA|length=2108bp
TAGCAACGGTGGCTGTCAGGGTCTGCCCCTGCAACTCGGTGGTGGTGGTG
CTTGGCGGGGTCTTGGGTCTCGCAAGTTTATATGTGTGTGTGACTGCATA
ATTCTTTAGATACGAAGTTTTTGCCCTCGACATGTTTTTCGCTGTAGGGC
GCGTGATTTTCAAAACGAGAAGAACGTTGTTCACAAGGTCAGTGTCCAAA
GGGTTCGCGGCGCCGGTGGTCTCACCTTGTTCTATCTTGCCTCGCAATAT
TTCCAATCTCTCCTTCCCTTATTTGGGGGAGACAGCAGGATCACGCCCGA
CGTAAAGCTTTAACTGGCATCCTCGTGCAAGATCGCATGGAACTTTTGAA
ATGTCAGACCTGTGGCCTTGGATTTAACTCGTCATCAGCTCACAAAGATC
ACTACAGATCTGAGCTTCATCGCTACAACTCAAAACGCCGTACGAATGAG
TTAGGCCCTGTGAGTGAGCATGATTATCAACGTCGGAAAGCCGCTGCACA
GAGTTTAATAGGATCAGAAGGATCAGCGTCTCACGGATTCCATGGGAAGT
GTCAAGTGTGCAACAGGACATTCGCATCGAAGGCGACGCTTCAGCAACAC
TTGAAGTCCCGTAAACATGCCTACGCCACAGAACGAAGCACACAAACGAC
CAGTAAGAGTGAAATTGTGAGCGAGGGTGGCGTTGTTATGGCTGCTCTAG
GTGGAAGCGAGAGAAAAGACAGAAGCGGGACTACAGAGGAAGACGACACT
GTTGGGCCGGCTGATCTGGATCCAGAAGTTTGTATTTTTTGCAACCGCAG
ATACTTTACAGTAGAGTCTGCAATTTTGCACATGTGGAAACAACATGGAT
TTCACCTCCCCGACGGTGAATTCTTAGTGGATCTGCATGGCCTACTCCGC
TACTGCGCAGAGAAAGTGAAAATTGGGTGCATGTGTTTGTATTGCAACGG
CAAAGGCAAGAGCTTTCTGAGTCCCCGGGATGCGCAACACCATATGGAAG
CAAAAAGTCATTGTAAGCTTTTGTATGAAGAGGGCGAAGACTTGCATGAA
TTTCGACCGTTTTATGATTTCAGTGCCTCGTACCAGGTACTCGATTCCCG
ACGACGGTATCAAGAGGAGGAGAAGATGACCAACAAGACTGGACCAAAAA
GTTCTGGTATCGACCTGGGCGCTGTAGATGATGATGACATGTCGCTGGAG
ACGGTGGACTCCGCATACGAGGAACTGAGTGACGGTGGAGGAATGACAAC
GATGGACGATGGCGGAAACGTTGGGAAGGGAGGCGAGATGGAGCAAATCT
TCGACCATGCAGCTATGAGGGTCTCGCATTTGGGCGAGCTCGTGTTGCCA
GATGGTCGCTCTTTAGGTTGCCGGGAGAACAACAGGTACTACAAACAGTA
TTACCGCCCTGAGGATACACGTGTGGCGTTAATAGCGTCGAAACAAGAGA
AGGCTGGGCGCATGGCCTCAGGAAGTCATGACAGCGCAATGGTGAGAACG
GGGAATAATACAAATGTGGCATATCGGAGCGGAGTCAGTAGAGAGGGAAT
GTTGGAAAATGACAGAGCTGCCCGACGTGCAGTGATGAAGGTGACGGCTG
CCGTCCGGCGGACTTGCGAGAAATACAGACTGCGACGAGAGATAAGCACG
AACAAGTTCCATAAAAGGCCTCAGATTGATGGCTAGATGTGTGGCAGACA
TTGAAAAAGTATGCAGGAGCTTCTAAGGACAGCAGTGGCTCATCGTGTGA
GTAGTAGAAAGTGCATAGCTTTCTCTTCCCATTTTGCGAGTCTTTGTTGT
ACTTCCTCTCTTCACGACTCCATTTTTTTCTCATTTTTCTCACGTCGTCT
TCTTTTATCTGCGTGATATTCGATGCGTGATCTTTGTATAAACTGTACCT
CATTATTACTTTACGGGCCAGACGCACCGCTACCCGGCGTCACCCTCTTT
GAGAGAGAAGACGTTTTGGAGAGGACCTCTAGATGCAGGGCTCTTTTCTA
TCACCTTAAGTATAACACCTAGCTGCTGCCTCAGGGACTCGACGCCATAA
TTCGAAAAATCATCGAAGAGAGCGTCGATCACAGCCTCTCGCTTCATTTC
CGTCAACC back to topprotein sequence of rna3964 >rna3964-protein ID=rna3964-protein|Name=rna3964|organism=Nannochloropsis gaditana|type=polypeptide|length=817bp
MPDPAFFQCLGVTRATLTPSLLVNLLHCNAPILSRGQLRFCLCSGETLSF
ITARTLLMRAPLCTIIHLYGSTEVSGDASWTTLTTGDLEYGKTANLDIVP
LGKPLPGTRMWLVGSETSTKLEVGQIGMPVDMNGELWVEGPGVALGYYGK
QGIHSNFVAKERDGHPVFKTGDLVRCISDTTNTSLYFLHRRDSSAKVRGV
WIHLEEGERELALALGLNSKEELGLSVVSSNTDTENSELLIALTWKAAQS
WPNLPKLRQRLIGRGISPELMPTRIVIGMKDQLLPLTSNGKLDRQMLSTW
GSEVASRCTSYAEMVRSRFKDDSSGYWLEFCFSKLVGTQDENHIGLGLFQ
RGGHSLLAMQALYHIERHFKAASAGVMIEDMARPVAEISKKIGKNRDTLP
RKRGRSFTAETISDRNQLPTMLQAWTFEFEKCVDAQPCVVSLDNGERLII
VGSHDHYIAALEANTGKVKWRSHTSGRIEGKVAVQNDLIFVPCLDYRLYA
FSLVTGELAWTFITQGELKCTPLPLWLPSPTHDESKGISLVLFGSYDGRI
YVVEASSGACFAKPFPLQGSPYASPIVIPGEKRNSDSDERIITVTNRGRV
AQLKLEREGMVLKGAHLRWALHSDWEQEIGCAVFTTPVYSTTTAYLVFGG
TDGAVVALDPFHGGSIVWRILLDQVQSSPIFISPCLMPRNSETEIELVLI
ACQTSLYCIQTSSGKHCWKRKLETRPDEVITGQPTFLEGSLIVLLTTQFG
KLLLLNLDSELDAVDTGTRELILTGESRLTSPAIITLPKETVFPYRKSWQ
CSIGSRDNKVYMINISG back to topmRNA from alignment at CM002462.1:519847..524478+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3964 ID=rna3964|Name=rna3964|organism=Nannochloropsis gaditana|type=mRNA|length=4632bp|location=Sequence derived from alignment at CM002462.1:519847..524478+ (Nannochloropsis gaditana)
GTGAGCTGATGACGAGTTAAATCCAAGGCCACAGGTCTGACATTTCAAAA
GTTCCATGCGATCTTGCACGAGGATGCCAGTTAAAGCTTTACGTCGGGCG
TGATCCTGCTGTCTCCCCCAAataagggaaggagagattGGAAATATTGC
GAGGCAAGATAGAACAAGGTGAGACCACCGGCGCCGCGAACCCTTTGGAC
ACTGACCTTGTGAACAACGTTCTTCTCGTTTTGAAAATCACGCGCCCTAC
AGCGAAAAACATGTCGAGGGCAAAAACTTCGTATCTAAAGAATTATGCAG
TCACACACACATATAAACTTGCGAGACCCAAGACCCCGCcaagcaccacc
accaccgagtTGCAGGGGCAGACCCTGACAGCCACCGTTGCTACATGCGC
TCGCACTTCAGAGCATTTTTTTTAAGAtcccctccacttccataAATGGG
AGTAGAACAAATATTCCCTTAtttaaaaaaaggaatgGAGCGATCATGCT
CTATCAATGGATGGAATTTTCGACTATTTCTACAATTTAAGGAGATGATT
ACGTCCCTCACTCCTTACTTCCTCGCCCGGCGCTGCCATGTAGGGTGAGA
CATACTAATCAGGCTTTAAGAGCGCTTTCAGTGAGATTATGAATAGAGTT
GTTCTGCCAATCGACAAGATATTTCACTATCAAGCTTACTTTCCCTCTTC
AGACCCCAACTCTTCGTCATATGGCACAAACCGAACGCCGGGAGGCATTG
AGCAAGCCACAGGCACTTGAAGGCGAATGAAAGCAACGGTAAGGGACGGC
TGAATCGTCCAGATAGAGCGTGTCAAGACATTGTTGGTTGATTTTTGGTG
CAGAAAAATGCCTGCCATAGTTTATATCCTGACAACTTTCTTGCAACGCA
ATTGGTACGGAAAAAAGCtggcggtgggaaggggaggaggttgcagcGGT
TGCTGCCATTTTAGGGTCACGCACATGCGAGCTCATCATATCGTCTCAAT
CTGCACACGCCAGTGTATTACATGTGAATGGTAGAAGGGGATAGGATCGG
AATCGACAAGTTTTCAAACATGTCTCTTTTGGCAATGTGGAAAGCAGTCG
TGGCCAGCAGTGGGAGCGATACCGCTTTGCGAGTGGTGACGAATCTCCCT
ATCGACGACCTTTCTGAATATAGCCGAAATTATGTACGAGATTTGACATT
TGAGTATCTGGATCGATACAGCAATAGTCTTTCAAAGCTTTTATTGAAAG
CAGGCGTCCTTCCAGGGGACCGCATCGGACTTCACTTTCATGCCTCAGAT
CCAGGAGAAATAATTTCCTTGCTAGCCGTGCTAAAGTGTGCCGCGATATA
TGTTGCACTGGACAACGCTACCTGTGGGAGAATTGTCTCTGACGCAGGCG
TGCGATTAGTTTTGGTCGGTGGTCGGGAAAATGTAGGAAAATCAACTATT
TTTCTACCAAATAAAACTCCCTTGTTGCGGATTGGGCGGTGGGGAGACAT
CTCTGAAGGCGATGAGCTCATCAGACTGCCTTTGCCTGATCCAGAACCTC
CTCGCAGCAGCTTAGATGGCGCATTCAATATCCTCTATACCTCCGGGAGT
TCGGGCCCATCCAAAGGTGTCgttggaagggaaaaaggttTTGTCTATCG
GATCGGCTGGATGCATCAGGCTTTTCCTTTTATCAAAGACAAGGAATTAG
TGCTTCGACGGACACCACTCGCGTTTGTTGATTCGGTGTGGGAGATATGG
GGGGCCCTCCTGGCAGGTGTACCGTAAGTATGGATTTTTCTAAAAGAACT
CTCGATAATTTTGTGGCTGCTTCTGGCATTGATGATTCGTCGTCGGGCGG
TCTGACTTTTAGGCAAACTCACGAGTCCTATTTTGCAAAAaatgggagga
atggaggccTGTTACAGGACTGAGAGCATTCGACGTGTGTACAAACATCC
TGAGCCACAGGAAGCATACTCAGCGTTATCCAAAAAATTGCTATGCCCTC
ATTTATTCTACCTCTCTTATAAAGTTCTTTCTTGTCTCCCCCACCAGATT
ATGTATCCATTTGACTAGTCTTGGAATGCCAGACCCTGCATTTTTCCAAT
GTCTCGGGGTTACAAGGGCGACATTGACACCTTCTCTGCTTGTGAATCTC
CTTCACTGCAATGCGCCTATATTAAGCCGAGGACAGTTGCGCTTCTGTTT
ATGCAGCGGAGAGACTCTGTCGTTCATCACGGCGAGAACATTATTGATGC
GTGCACCTTTATGTACGATTATTCATCTGTACGGTTCGACGGAAGTCTCT
GGGGACGCGTCATGGACGACATTAACTACAGGTGATCTGGAATATGGAAA
AACCGCGAACTTGGACATCGTTCCTCTTGGTAAACCTCTTCCCGGGACGC
GCATGTGGCTGGTGGGGTCCGAAACATCAACGAAACTGGAGGTGGGGCAA
ATTGGCATGCCTGTTGACATGAATGGAGAGCTCTGGGTAGAAGGACCAGG
CGTTGCGCTAGGTTACTACGGCAAGCAAGGCATTCATTCCAATTTTGTAG
CTAAAGAACGCGATGGCCATCCAGTATTTAAAACGGGAGATTTGGTTAGG
TGTATTTCGGATACGACTAATACAAGTCTTTATTTTCTCCATCGAAGGGA
TTCTTCAGCGAAAGTCCGAGGGGTTTGGATAcacttggaggagggggaac
gtGAGCTGGCTCTGGCGCTTGGCCTAAATTCTAAGGAAGAATTGGGACTT
AGTGTCGTTTCGAGCAACACAGATACGGAGAATTCTGAGCTGTTAATAGC
CCTAACATGGAAGGCAGCCCAATCGTGGCCGAATCTGCCCAAGTTAAGAC
AACGGTTAATTGGACGAGGAATCTCACCAGAGCTCATGCCGACACGAATA
GTTATTGGTATGAAAGATCAGCTATTGCCCCTTACTTCAAATGGAAAGCT
GGATCGACAGATGTTATCTACTTGGGGCTCTGAAGTAGCATCAAGATGCA
CATCTTACGCAGAGATGGTGAGATCAAGATTCAAAGATGATTCTAGTGGG
TATTGGTTGGAATTTTGTTTCTCAAAGCTTGTTGGTACTCAAGACGAAAA
TCATATAGGGCTTGGTCTATTTCAGCGTGGAGGCCATTCACTTCTAGCAA
TGCAAGCATTATACCACATTGAGCGGCATTTTAAAGCAGCAAGCGCTGGC
GTAATGATAGAAGATATGGCCCGACCAGTTGCTGAGATTTCGAAAAAGAT
AGGCAAAAATCGGGACACATTGCCGAGAAAGCGAGGCAGAAGCTTTACCG
CCGAAACAATTTCAGATAGAAATCAACTTCCTACAATGTTGCAGGCTTGG
ACTTTTGAATTTGAAAAATGCGTGGATGCGCAACCATGTGTCGTATCATT
AGATAACGGTGAGCGTTTGATAATTGTCGGTTCTCATGATCATTATATTG
CTGCTTTAGAAGCGAACACAGGAAAGGTTAAGTGGCGCTCTCATACGAGC
GGTCGTATCGAAGGAAAAGTAGCAGTACAAAATGATCTCATTTTCGTACC
CTGCCTTGATTACCGACTCTATGCCTTCTCATTGGTAACGGGAGAGCTTG
CATGGACTTTTATAACACAGGGAGAGTTAAAATGtacacctctccctctc
tggCTTCCAAGTCCTACTCATGACGAATCCAAAGGAATCTCGctcgtcct
cttcggaaGTTACGATGGTAGAATATACGTCGTTGAAGCATCATCGGGAG
CATGCTTTGCGAAACCGTTTCCTCTCCAAGGTAGTCCTTATGCTTCCCCG
ATTGTAATTCCTGGTGAAAAGCGGAATTCAGACTCGGATGAGCGAATTAT
TACTGTAACAAACCGCGGACGTGTTGCACAACTGAAactggaaagagaag
gaatgGTGCTGAAAGGAGCACACTTAAGATGGGCTCTACATTCTGATTGG
GAACAAGAAATCGGGTGCGCTGTATTCACGACGCCTGTTTATTCGACAAC
AACTGCATATTTGGTATTTGGTGGAACGGACGGCGCAGTTGTAGCTTTGG
ATCCATTCCACGGGGGATCTATAGTATGGCGAATCCTACTCGACCAAGTT
CAATCATCGCCAATCTTTATTTCACCATGTCTTATGCCGCGCAACTCGGA
AACGGAAATAGAGCTTGTCCTAATAGCCTGCCAAACATCTTTGTATTGTA
TCCAGACAAGCTCTGGAAAGCATTGCTGGAAGAGAAAATTAGAGACGAGG
CCTGATGAAGTGATAACTGGACAACCCACATTCCTAGAGGGCAGCCTAAT
CGTCCTATTGACAACACAATTTGGCAAGTTGTTGCTTTTAAATCTCGACA
GTGAGCTCGATGCAGTCGATACAGGGACAAGGGAGCTCATTCTTACGGGC
GAAAGTCGTTTGACAAGTCCAGCAATTATCACCTTACCTAAGGAAACAGT
ATTTCCTTACAGGAAATCCTGGCAATGTTCAATAGGCTCTAGAGACAACA
AAGTGTACATGATAAATATTTCTGGTTGATTGGATTTGTGTATTGAAAAT
GGATAGGACAGAGTCTTAACCAGATATGTCTCATCATGTGAGTGATTTTT
GAAAGAAGTAAAAACCATGTGAAACGAAATGG back to topCoding sequence (CDS) from alignment at CM002462.1:519847..524478+ >rna3964 ID=rna3964|Name=rna3964|organism=Nannochloropsis gaditana|type=CDS|length=2454bp|location=Sequence derived from alignment at CM002462.1:519847..524478+ (Nannochloropsis gaditana)
ATGCCAGACCCTGCATTTTTCCAATGTCTCGGGGTTACAAGGGCGACATT
GACACCTTCTCTGCTTGTGAATCTCCTTCACTGCAATGCGCCTATATTAA
GCCGAGGACAGTTGCGCTTCTGTTTATGCAGCGGAGAGACTCTGTCGTTC
ATCACGGCGAGAACATTATTGATGCGTGCACCTTTATGTACGATTATTCA
TCTGTACGGTTCGACGGAAGTCTCTGGGGACGCGTCATGGACGACATTAA
CTACAGGTGATCTGGAATATGGAAAAACCGCGAACTTGGACATCGTTCCT
CTTGGTAAACCTCTTCCCGGGACGCGCATGTGGCTGGTGGGGTCCGAAAC
ATCAACGAAACTGGAGGTGGGGCAAATTGGCATGCCTGTTGACATGAATG
GAGAGCTCTGGGTAGAAGGACCAGGCGTTGCGCTAGGTTACTACGGCAAG
CAAGGCATTCATTCCAATTTTGTAGCTAAAGAACGCGATGGCCATCCAGT
ATTTAAAACGGGAGATTTGGTTAGGTGTATTTCGGATACGACTAATACAA
GTCTTTATTTTCTCCATCGAAGGGATTCTTCAGCGAAAGTCCGAGGGGTT
TGGATAcacttggaggagggggaacgtGAGCTGGCTCTGGCGCTTGGCCT
AAATTCTAAGGAAGAATTGGGACTTAGTGTCGTTTCGAGCAACACAGATA
CGGAGAATTCTGAGCTGTTAATAGCCCTAACATGGAAGGCAGCCCAATCG
TGGCCGAATCTGCCCAAGTTAAGACAACGGTTAATTGGACGAGGAATCTC
ACCAGAGCTCATGCCGACACGAATAGTTATTGGTATGAAAGATCAGCTAT
TGCCCCTTACTTCAAATGGAAAGCTGGATCGACAGATGTTATCTACTTGG
GGCTCTGAAGTAGCATCAAGATGCACATCTTACGCAGAGATGGTGAGATC
AAGATTCAAAGATGATTCTAGTGGGTATTGGTTGGAATTTTGTTTCTCAA
AGCTTGTTGGTACTCAAGACGAAAATCATATAGGGCTTGGTCTATTTCAG
CGTGGAGGCCATTCACTTCTAGCAATGCAAGCATTATACCACATTGAGCG
GCATTTTAAAGCAGCAAGCGCTGGCGTAATGATAGAAGATATGGCCCGAC
CAGTTGCTGAGATTTCGAAAAAGATAGGCAAAAATCGGGACACATTGCCG
AGAAAGCGAGGCAGAAGCTTTACCGCCGAAACAATTTCAGATAGAAATCA
ACTTCCTACAATGTTGCAGGCTTGGACTTTTGAATTTGAAAAATGCGTGG
ATGCGCAACCATGTGTCGTATCATTAGATAACGGTGAGCGTTTGATAATT
GTCGGTTCTCATGATCATTATATTGCTGCTTTAGAAGCGAACACAGGAAA
GGTTAAGTGGCGCTCTCATACGAGCGGTCGTATCGAAGGAAAAGTAGCAG
TACAAAATGATCTCATTTTCGTACCCTGCCTTGATTACCGACTCTATGCC
TTCTCATTGGTAACGGGAGAGCTTGCATGGACTTTTATAACACAGGGAGA
GTTAAAATGtacacctctccctctctggCTTCCAAGTCCTACTCATGACG
AATCCAAAGGAATCTCGctcgtcctcttcggaaGTTACGATGGTAGAATA
TACGTCGTTGAAGCATCATCGGGAGCATGCTTTGCGAAACCGTTTCCTCT
CCAAGGTAGTCCTTATGCTTCCCCGATTGTAATTCCTGGTGAAAAGCGGA
ATTCAGACTCGGATGAGCGAATTATTACTGTAACAAACCGCGGACGTGTT
GCACAACTGAAactggaaagagaaggaatgGTGCTGAAAGGAGCACACTT
AAGATGGGCTCTACATTCTGATTGGGAACAAGAAATCGGGTGCGCTGTAT
TCACGACGCCTGTTTATTCGACAACAACTGCATATTTGGTATTTGGTGGA
ACGGACGGCGCAGTTGTAGCTTTGGATCCATTCCACGGGGGATCTATAGT
ATGGCGAATCCTACTCGACCAAGTTCAATCATCGCCAATCTTTATTTCAC
CATGTCTTATGCCGCGCAACTCGGAAACGGAAATAGAGCTTGTCCTAATA
GCCTGCCAAACATCTTTGTATTGTATCCAGACAAGCTCTGGAAAGCATTG
CTGGAAGAGAAAATTAGAGACGAGGCCTGATGAAGTGATAACTGGACAAC
CCACATTCCTAGAGGGCAGCCTAATCGTCCTATTGACAACACAATTTGGC
AAGTTGTTGCTTTTAAATCTCGACAGTGAGCTCGATGCAGTCGATACAGG
GACAAGGGAGCTCATTCTTACGGGCGAAAGTCGTTTGACAAGTCCAGCAA
TTATCACCTTACCTAAGGAAACAGTATTTCCTTACAGGAAATCCTGGCAA
TGTTCAATAGGCTCTAGAGACAACAAAGTGTACATGATAAATATTTCTGG
TTGA back to top
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