rna3956, rna3956 (mRNA) Nannochloropsis gaditana

Overview
Namerna3956
Unique Namerna3956
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length738
Alignment locationCM002462.1:502914..504585 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g165.8155.mrna
Orig protein idgnl|cribi|Naga_100001g165.8155
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:502914..504585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g165gene3807Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3956rna3956-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26644.1cds3946Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3956 ID=rna3956|Name=rna3956|organism=Nannochloropsis gaditana|type=mRNA|length=738bp
ATGCATTACCCGGGGGCTGACACACTGCACAATTTCCCAATTGTGGATGG
AATTAGGTTGGCGTTGCCTTCCTTTGAGTCTTTTTCTACGCGCTGCATCG
AAGCGGTAAGGACAAGTTGTTTGCAGCTCAACAGGCCTGCGAGTTACTTA
TTACAAGCGTACAGCCTGGTACGAGCAACCACACTTAAGCATATATGGCA
TCAAACGATCCCAGTCCTCGTTGGTTGGAGGAAGACGCTACAAAAAGTTT
GTTGGAGTCAGCATGTCATGAGGAGGAGGCCGAGGAAGAAGAGTCCCTCG
CTACTGAGCAGTCACCACCAAACAAGAAGAAACGGCCGCGAAACCCGAAG
GCGCCGTATCACAAAGCCATTTTTTGCGGTACTATCAACATTTACAGTGC
TCTTAAGTCTTGTGAGTGTAGCCTACAATTTGTATCTCATCGCGACTAAG
GACAAAGACACGAACTCGATTCTGCCCCGGATACATAGAGGCTTTGCAAT
TGTCTTAGCATTTCCGGCTATCCTGAATGAGTCGGGCATTAAGTGGTGGA
GAAAGCTATGTCCAATTCTAAGTAATTTTTTCGTGCGGGGATTTTTTTAC
TGTCTCATAGCATGTCTGAGCATTGAAGACTTCAGTCCAAGCAGCGATAA
TGTAATGGGCTTTGTTTTCTTGAGCTTAGGTCTTTTTTACGTCGCTTTAG
GCATGCTGTGCGTGCGTCGGCATGTGGAAATCACGTGA
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protein sequence of rna3956

>rna3956-protein ID=rna3956-protein|Name=rna3956|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MSTQVSSCGAKDGESGSPRISSRKEAVPVRSLLQQEVNFQRGDASGLGAT
TVHERLSHFMFVAFNNRARSVDVDHVIESIFSTTGDARLPQPVPLSQMID
LLVDFWEADGLYD
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mRNA from alignment at CM002462.1:502914..504585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3956 ID=rna3956|Name=rna3956|organism=Nannochloropsis gaditana|type=mRNA|length=1672bp|location=Sequence derived from alignment at CM002462.1:502914..504585+ (Nannochloropsis gaditana)
ACTCGCATGCGGGTCTTCCCTGCGACCGGATCTCACGTGGTCAACTGTTC
ATTGTAAGGCTACATGCCATTTTTATGCAGCCAAAACTCGGTGCTTTTTC
AAAATTGATGTCGCTCCCTGCTCTACACACATAACGATAGGCAATATTCA
ACGCCCGCTCAACCCGTCTGCAGCCGCACAGCCTGCTATCTTCTTATAAG
CCAAGCTTATGTGCTTGATCTCTAAATATCACAGCATCCCTCCTATTTAG
CAAAAGTTTGAGAGTAGTACATTCCTGCTCGCTCAGGGATTTTTTTGAAA
CACGTCCAAATTGGCGGATACAAAGGAAGAAGCTGGGAGACAGCATTTCT
GTTTCCTTGCACGGTGAAGATAAGCATCCAAGAAGTCACGGTCTTCTCTG
TCGCACATGAGTAAGAACTTCAAGCTTAATGGGGAGAGTGCTGCGGCTAT
AGGAGAGGTTGGGTCGCTTTCAGAGGCGTCCACTGCCACAGAGAGGGGAG
CAGCGGAGAGCCCCTCAGCAGGCAGCACGCACGCGTCCAGGGAGGAATAT
GTCAACTCAGGTGCGTGAGAATGCAgtgagaggaaaagggcgttATTATC
CACCTCCACTGGACGCGTAGGTACATGTCCTattgtcctcttcccacgTG
GTGCATCTTCGTTGTCTTGAAGTTTTCGTGAAGTGCTTTGTTGAACTCAT
CTATCTTCTTTTGGCGCGTTCGAATACGACGACTTTTTATCAGGTCTCAA
GCTGTGGAGCGAAAGACGGAGAGAGTGGCAGTCCAAGAATAAGCAGTCGG
AAGGAGGCGGTACCCGTTCggagcctcctccagcaagaAGTCAACTTCCA
AAGAGGTGACGCATCCGGGTTGGGCGCAACTACCGTGCATGAGCGACTTT
CTCATTTTATGTTCGTGGCTTTTAACAACAGGGCTAGATCGGTGGACGTG
GATCACGTTATTGAGAGTATCTTTTCTACAACTGGGGACGCCCGTCTGCC
ACAGCCTGTCCCTCTTTCTCAGATGATCGATTTGCTTGTGGATTTTTGGG
AGGTAATGTAAAGCACAGGGGTCGGACCGGTCGGACCAGAACGTTACTCT
TTTGCCATTATATGGTCATCTTGTTTTCAACAATGCGTCGTTTACCTCTG
CAGGCGGACGGCCTCTACGACTGAAGGTAGCTGGCTCGCCGTGGCGAAGC
AGTGGGGAATGACAAGTCGCATGAGCGCATCAGGAGCGAAATTGTCCGGG
AAATCCCACGTAATTTTTGGCGATAGAATAGTGGGAAGATAAAAGGATGA
GCACAAATGTAAAAAAAAACGTCGACGAGGAAAGTCAGCAAACTTCGCAT
TGAAAGAAGTCGTACAGGCTAATCTACCCCCTGAACTCTATTTTGGCTCG
AAAAGCATGAGTGACATGGATCcttttatttttcttttgGGCAATTGGCT
GCATGCATGGACAGTCATGGGAATGTCCAAATTTGACACACGTCTCAGCC
CACTCGAAAGCGACACGTCTGCATGGGATTCAATGCGTGCATGTACCCCC
TGTTACGCCTAATTTTCAGGTAGAAAATGCTGTGTCATCGTAGATTCCAG
GCAGAAGAATGTTACACTTTTCTGCAATGCACTGGACGATACCCGAGCGG
TAGGCATTGACACCCTTGCTTT
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Coding sequence (CDS) from alignment at CM002462.1:502914..504585+

>rna3956 ID=rna3956|Name=rna3956|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002462.1:502914..504585+ (Nannochloropsis gaditana)
ATGTCAACTCAGGTCTCAAGCTGTGGAGCGAAAGACGGAGAGAGTGGCAG
TCCAAGAATAAGCAGTCGGAAGGAGGCGGTACCCGTTCggagcctcctcc
agcaagaAGTCAACTTCCAAAGAGGTGACGCATCCGGGTTGGGCGCAACT
ACCGTGCATGAGCGACTTTCTCATTTTATGTTCGTGGCTTTTAACAACAG
GGCTAGATCGGTGGACGTGGATCACGTTATTGAGAGTATCTTTTCTACAA
CTGGGGACGCCCGTCTGCCACAGCCTGTCCCTCTTTCTCAGATGATCGAT
TTGCTTGTGGATTTTTGGGAGGCGGACGGCCTCTACGACTGAATGTCAAC
TCAGGTCTCAAGCTGTGGAGCGAAAGACGGAGAGAGTGGCAGTCCAAGAA
TAAGCAGTCGGAAGGAGGCGGTACCCGTTCggagcctcctccagcaagaA
GTCAACTTCCAAAGAGGTGACGCATCCGGGTTGGGCGCAACTACCGTGCA
TGAGCGACTTTCTCATTTTATGTTCGTGGCTTTTAACAACAGGGCTAGAT
CGGTGGACGTGGATCACGTTATTGAGAGTATCTTTTCTACAACTGGGGAC
GCCCGTCTGCCACAGCCTGTCCCTCTTTCTCAGATGATCGATTTGCTTGT
GGATTTTTGGGAGGCGGACGGCCTCTACGACTGAATGTCAACTCAGGTCT
CAAGCTGTGGAGCGAAAGACGGAGAGAGTGGCAGTCCAAGAATAAGCAGT
CGGAAGGAGGCGGTACCCGTTCggagcctcctccagcaagaAGTCAACTT
CCAAAGAGGTGACGCATCCGGGTTGGGCGCAACTACCGTGCATGAGCGAC
TTTCTCATTTTATGTTCGTGGCTTTTAACAACAGGGCTAGATCGGTGGAC
GTGGATCACGTTATTGAGAGTATCTTTTCTACAACTGGGGACGCCCGTCT
GCCACAGCCTGTCCCTCTTTCTCAGATGATCGATTTGCTTGTGGATTTTT
GGGAGGCGGACGGCCTCTACGACTGA
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Synonyms
Publications