EWM26644.1, cds3946 (CDS) Nannochloropsis gaditana

Overview
NameEWM26644.1
Unique Namecds3946
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:503462..503473 +
Alignment locationCM002462.1:503657..503965 +
Alignment locationCM002462.1:504067..504087 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26644.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g165.8155.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:503462..503473 +
CM002462.1supercontigCM002462.1:503657..503965 +
CM002462.1supercontigCM002462.1:504067..504087 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26644.1 vs. NCBI_GenBank
Match: gi|585108732|gb|EWM26644.1| (hypothetical protein Naga_100001g165 [Nannochloropsis gaditana])

HSP 1 Score: 233.802 bits (595), Expect = 6.544e-78
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MSTQVSSCGAKDGESGSPRISSRKEAVPVRSLLQQEVNFQRGDASGLGATTVHERLSHFMFVAFNNRARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 113
            MSTQVSSCGAKDGESGSPRISSRKEAVPVRSLLQQEVNFQRGDASGLGATTVHERLSHFMFVAFNNRARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD
Sbjct:    1 MSTQVSSCGAKDGESGSPRISSRKEAVPVRSLLQQEVNFQRGDASGLGATTVHERLSHFMFVAFNNRARSVDVDHVIESIFSTTGDARLPQPVPLSQMIDLLVDFWEADGLYD 113          
BLAST of EWM26644.1 vs. NCBI_GenBank
Match: gi|299469780|emb|CBN76634.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.855 bits (159), Expect = 9.824e-12
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 0
Query:   30 RSLLQQEVNFQRGDASGLGATTVHERLSHFMFVAFNNRARSVDVDHVIESIFSTTGD-ARLPQPVPLSQMIDLLVDFWEADGLYD 113
            R LL+ E   +   A G G      R           RAR++DVD VI+ +FS  G    LPQ VPL QMIDLLVD WEA+GL+D
Sbjct:   26 RGLLRWERERKAWLAGGTGGPVGRRR----------ARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100          
BLAST of EWM26644.1 vs. NCBI_GenBank
Match: gi|219116655|ref|XP_002179122.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409013|gb|EEC48945.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 56.9954 bits (136), Expect = 1.716e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   68 ARSVDVDHVIESIFS-------TTGDARLPQPVPLSQMIDLLVDFWEADGL 111
            A+ ++VD +I++IF+       TTG  R P PVPL QMID+L D WEA+GL
Sbjct:  151 AKPLEVDEIIDAIFAAPRQWRETTGPTRFPTPVPLPQMIDILQDLWEAEGL 201          
The following BLAST results are available for this feature:
BLAST of EWM26644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108732|gb|EWM26644.1|6.544e-78100.00hypothetical protein Naga_100001g165 [Nannochlorop... [more]
gi|299469780|emb|CBN76634.1|9.824e-1245.88conserved unknown protein [Ectocarpus siliculosus][more]
gi|219116655|ref|XP_002179122.1|1.716e-750.98predicted protein [Phaeodactylum tricornutum CCAP ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3956rna3956Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications