rna3952, rna3952 (mRNA) Nannochloropsis gaditana

Overview
Namerna3952
Unique Namerna3952
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2210
Alignment locationCM002462.1:492757..494621 -

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Properties
Property NameValue
Productoxidoreductase
Orig transcript idgnl|cribi|Naga_100001g171.8137.mrna
Orig protein idgnl|cribi|Naga_100001g171.8137
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:492757..494621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g171gene3803Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3952rna3952-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26626.1cds3942Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3952 ID=rna3952|Name=rna3952|organism=Nannochloropsis gaditana|type=mRNA|length=2210bp
TACCCGGCAATTAGTGGGGCTGAAGCTCTCACACCGAGGCTGGAAGTACA
TGTGTTAGTGTCTGCCGCTCTGTATGACTTTGCGACCACTATCTCTTTGT
CTACTCCAAAATGCGCTTGATAATTTATGCGCACTCATTATTGATCGTAG
CAATCCCGCATATAGCTTTCCTCCCAGATGCTACCCCGCGAGGGTGAAAC
TCGTCGAGCTCCTCCCTGTCCTTCATTGTCATACTAAAGCCAGCAAAACA
AGGCCCGACTACCATTTCGGTTCGGAAGTCTTATTACAGGCATTATGTTG
AGATGGATAAGACAAGATCGGATCATGGATATGCCCACACTTAAAAATCA
CACCGCCACGCTTGTGGGAAACCGGGTACGTTATCCCCCCCCCTTTGCAG
TGGTAACCGTATACAAGAAAGTTACCATTCATTTTCATGATTTCCCTCTA
GATTTTTGTCTTCGGTGGTTACGATGGCCAGCGCAATCATTCGACTCTAC
ATGTTTTTGACCACACTACCCTGCGCTGGGTCTGCGAAAAAGTTTCCGGC
AAAGCTCCCCCCGGGCGCAACGGTCACACTGCCACCCTTGCAGAAAACAA
GCTCTACATCATTGGGGGCTGGCTGGGCTCCGGGCCTCTGGCGGCCAGCG
ACGTGCACTACATCGATCTAGCAGAGATGAAGTGGGTGGAGCCCCCCCAT
CCTGGGTGAAGCCCCGGGTCCGTGCAACATGCACACGAGCGACTACCTGC
CTCACCGGCGCCAGATCCTGGTCTTTCGGGGCGGGGACGGCCGGGAATAC
TTGAACGATTTGCATGGCCTTCACGTAGACACCGGGCGGTGGGAAAGGCT
GCGATGCTCAGGGACGATTCCGGAAGCGCGCGCCAATCACTGCTCGGCTG
TCTTAAATCGCCACCTCTTCATTTTCGGTGGGTGGAATGGACAGACGCGT
TTGAACGACGTGCACGTATTAGACACCGACACGATGGTGTGGAGCCGCCT
TGAGCCGCGAGGTGTAGCGCCTCCGCCCCGCGCGGGTATGACCCTCACCC
GCATCCGGGACAGGCTCTACTTGTTCGGGGGCTCCGGCCCTGCAGCCAAG
TGCTTCGACGATCTTCAGATCCTTGATCTCAAGGAGATGTGCTGGACGGA
AATCACATCACGATCGAAAAGCGGTGGAGGTGGCAGTTCAGGAACAGCGC
TGAGCAGCGGGTCCGGAGTCGGGGAGGAAAGAGCAATTCCAGGTGCACAC
CTTGCTTCCGCCGCAGAGAACAGCGGTCTTGAAAGATCGCGAGGGGGTGG
TTGGGGCGGAAATCAGGCCAACCCAAACGATGAGCATGTGACGGAGTCGG
TCTCAATTTGGGGAGAAGGTCCTGGTCCTCGCGCTGGACACAGCGCAACC
GTGCTCGATCGGCGCCTCGTCATTTTCGGTGGCTCTCACGGATCGCGCTA
CCTCGGTGAGATGTTTGTGCTTGATACAGACCCCGTTCCAGAGCCCCTGG
TCATCGCTCCATCGTGCGCTCAGCTCATAGGGAGTCATTTACGACACTAC
CTCGATCGGGAGGATTTCTCGGATGTGACGCTAATCGTTGAAAAGCGGCC
TGTTCGGGCGCACCGATTGGTCCTGTCCATAGCTAGCGATCGTTTCAAAG
CAATGTTTTCCTCAGGGTTCCGAGAGTCATCTGAACGGGAGGTGGAAGTA
GAAGGCTGTAGCTTTGAGGTCTTCAAGCTCATGTTGGGATACATCTACAC
CGGAGAGCCCCCGAGCGCATTGCTTGTTGGCAGTCAGTCGGATCCTATAT
TGGCTGCCGAACTCCTAGCGCTCGCGGATCAGTACATGTTGGACCACTTG
AAGCAATTGTGCGAAGCTCGCCTCACAGAGGAGGTGAGGGAGGACACCGT
CGACTCCATAATGGATTTGGCAGAAAGGAGCAATTCATGGCAGCTTCGTG
CAGTCTGTCGGCACTTTGTGCGAAATCGTGATGAGAGGCACGCGTCCTTC
GCCTCGTCTTTCTGAGTAATCATAATCCAAAACTAAGCGATGTACATATT
TGCTCATGAGACAACAGTGGGGCCGTAAGAAACGAGACTTTATCTAAAAC
CTTTTTTTGCTCCTTATGTTCAGAGCAGAACAAATAAAAAAACAGATTAC
CCCAGGGTAACGCCCAGAAAGTGGAAGGGCGCAAGGTTTTCAACACTCAC
TATGTTTATC
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protein sequence of rna3952

>rna3952-protein ID=rna3952-protein|Name=rna3952|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MPDLPLVAAGGFGDGRGLLAALSLGADAVAMGTRFACTKESPLHENVKGA
ISSPEKTENDTVYSKNIDGISARVLKTPFAAQTAVSRPNPLRVLIEALKQ
AKQFGVNPVKILPGYFWEPDKIYMLAQFGGATRKFELATVQGDLEKGIQF
VGQIQGLVNDVPTVHELVKRVLSEAARLHERQQMNFFRERK
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mRNA from alignment at CM002462.1:492757..494621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3952 ID=rna3952|Name=rna3952|organism=Nannochloropsis gaditana|type=mRNA|length=1865bp|location=Sequence derived from alignment at CM002462.1:492757..494621- (Nannochloropsis gaditana)
GGGGGTGTGTTCGCTATGATGCAGACACGCATAACCAAGCTCTTCAAAAT
TCAGCATCCCATTCTGCTGCCAGGGATGTCATGGATATCTCAACCTAAAC
TTGTTGCTGCCGTTTCCAATGCGGGTGGCTTGGGTATCTTAGCGTCCGGG
CCCCTCTCCGCCATCGAGACCGCCGCGGCGATCAAAGAGATCCGCAGACT
GACAGACAACCCATTTGGGATCGGGACAACTCTTATGATGCCAGTGAGTA
ATCCAGGCCATTGTTGTTAATACAAATACTGTATACGCATTATCGTCCAG
GCCAACATTCAAACACATCCCATTTTCCTTCCAGGGGGCGAAAGAAAATG
CAACCGTTGCTTTGGAGGAGGAAGTACCAGTAATCAACTATAGCCTAGGG
AAAGGAGATTGGCTGGCTGAACGGGCCCATATATATGGCGGTAAAGTCAT
TGCCACGGTCACCTCGCTTAAACACGGTACGAACTTTCGAAGCGAAAACA
AGTTAACGGCTCCTTCTTGTTACTTTCTACGATCTTGGACAAAACATATC
TTTGTTAAGGGGCAGAAATGGTGATGGAAGGAATGCCAATTTTCTGTAAA
AGACCTCTACTTTTCCATTTTCTATTCGTTGACCTCAAAATATGGAAAAG
CAAAGTCTGCTCGGGCGAGTGGCGCGGACGCTTTGTTAGTAACAGGCCAT
GAGGCTGCAGCTCACGGCGGGGACGTCACATCCCTGGTGCTTGTCCCGGT
TATCGCCTCCAATATGCCGGACCTACCTCTCGTGGCGGCGGGCGGCTTCG
GTGACGGCCGAGGATTGCTGGCGGCGCTTTCTCTCGGTGCGGACGCGGTC
GCCATGGGCACGCGTTTTGCGTGTACCAAGGAAAGCCCCCTTCACGAGAA
TGTCAAGGGGGCTATCTCGAGCCCTGAGAAGACGGAAAATGACACCGTGT
ACTCAAAAAATATCGATGGAATTTCTGCCCGCGTTCTGAAAACCCCTTTC
GCCGCCCAGACAGCTGTCAGTCGCCCCAATCCGTTGCGGGTTTTGATAGA
AGCATTAAAGCAGGCCAAGCAGTTCGGAGTGAACCCTGTGAAGATACTAC
CCGGCTATTTTTGGGAGCCGGACAAAATTTATATGCTTGCTCAATTCGGA
GGAGCAACTCGAAAATTCGAGCTCGCAACGGTAGGACCTATCTGGCAATT
GCCAACATAAAGTCAAACTATGGCTGTTTTCCTCAATATTTTCCCAAGAG
AGTCGAGGAGACCGTTCCTTCTGATTTGTATATTCTCCTTTGTTTAAGCC
TGATAGATCATGAAGATAGTGTAGTTTTGAGTAAAGTCTCCGCGGACGAT
GGTAAGGACGACGAAAATCCATTCTTTTCACATTTGCTCCACTCATGCGT
ACTACAGGTCCAGGGAGATTTGGAAAAGGGGATACAATTTGTGGGACAAA
TTCAAGGCCTTGTGAATGATGTGCCCACAGTACATGAACTTGTAAAAAGA
GTGCTCTCAGAGGCGGCACGGCTTCACGAAAGGCAGCAAATGAACTTTTT
CCGAGAAAGGAAATGATGGAATAGAAGAAAGGTGCAGAATATTCAAATAT
AGGCGACAATGTTCCGAAGATTGCTACCAGCAGCTTAAATGGGCCTCCAA
GTAATAGTCACGTGCGATTGCCAAATAAAACTGCATATATTTTCCAAGTG
GCTGTATGCATTTTTTGGACAGCTGATATGTGCGCGGGCATGTACACTGA
CGTTCTATTGTTGAGGTACTTTTGTCGGTGATATGAAGGCAAATATCAGT
GTCCAGTTCAGCTTTCGTGACATATTATTCCATTAAGTTGCGAACCAAAT
TTTAATATTTCGAGC
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Coding sequence (CDS) from alignment at CM002462.1:492757..494621-

>rna3952 ID=rna3952|Name=rna3952|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002462.1:492757..494621- (Nannochloropsis gaditana)
GTCCAGGGAGATTTGGAAAAGGGGATACAATTTGTGGGACAAATTCAAGG
CCTTGTGAATGATGTGCCCACAGTACATGAACTTGTAAAAAGAGTGCTCT
CAGAGGCGGCACGGCTTCACGAAAGGCAGCAAATGAACTTTTTCCGAGAA
AGGAAATGAATGCCGGACCTACCTCTCGTGGCGGCGGGCGGCTTCGGTGA
CGGCCGAGGATTGCTGGCGGCGCTTTCTCTCGGTGCGGACGCGGTCGCCA
TGGGCACGCGTTTTGCGTGTACCAAGGAAAGCCCCCTTCACGAGAATGTC
AAGGGGGCTATCTCGAGCCCTGAGAAGACGGAAAATGACACCGTGTACTC
AAAAAATATCGATGGAATTTCTGCCCGCGTTCTGAAAACCCCTTTCGCCG
CCCAGACAGCTGTCAGTCGCCCCAATCCGTTGCGGGTTTTGATAGAAGCA
TTAAAGCAGGCCAAGCAGTTCGGAGTGAACCCTGTGAAGATACTACCCGG
CTATTTTTGGGAGCCGGACAAAATTTATATGCTTGCTCAATTCGGAGGAG
CAACTCGAAAATTCGAGCTCGCAACGGTCCAGGGAGATTTGGAAAAGGGG
ATACAATTTGTGGGACAAATTCAAGGCCTTGTGAATGATGTGCCCACAGT
ACATGAACTTGTAAAAAGAGTGCTCTCAGAGGCGGCACGGCTTCACGAAA
GGCAGCAAATGAACTTTTTCCGAGAAAGGAAATGAATGCCGGACCTACCT
CTCGTGGCGGCGGGCGGCTTCGGTGACGGCCGAGGATTGCTGGCGGCGCT
TTCTCTCGGTGCGGACGCGGTCGCCATGGGCACGCGTTTTGCGTGTACCA
AGGAAAGCCCCCTTCACGAGAATGTCAAGGGGGCTATCTCGAGCCCTGAG
AAGACGGAAAATGACACCGTGTACTCAAAAAATATCGATGGAATTTCTGC
CCGCGTTCTGAAAACCCCTTTCGCCGCCCAGACAGCTGTCAGTCGCCCCA
ATCCGTTGCGGGTTTTGATAGAAGCATTAAAGCAGGCCAAGCAGTTCGGA
GTGAACCCTGTGAAGATACTACCCGGCTATTTTTGGGAGCCGGACAAAAT
TTATATGCTTGCTCAATTCGGAGGAGCAACTCGAAAATTCGAGCTCGCAA
CG
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Synonyms
Publications