rna3941, rna3941 (mRNA) Nannochloropsis gaditana

Overview
Namerna3941
Unique Namerna3941
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1384
Alignment locationCM002462.1:467575..468951 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g182.8103.mrna
Orig protein idgnl|cribi|Naga_100001g182.8103
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:467575..468951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g182gene3792Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3941rna3941-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26592.1cds3932Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3941 ID=rna3941|Name=rna3941|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp
CCTGCTTCGGATGTGATGATGACCCCCCGTACTTCATCTTCCATGACGCT
TTGAGCCGAATCCTTGGCACTAAACTCAGTGTATTATCACGTCCCTTAAT
CTCATGATATATTTAGTATGTCACGGTCGCGGTCCTGTTCCGAAGCTTCT
GCGGCCTCTTCGTCATCGGCAGCAGCAGCGTCTTCGACTCACGCCCCTTC
TTCGCGCGGAGGTAACCTAGAAGATGTTACAACGAAGTCCGAGCACGACG
AAAATAGGCAGCGATATGATTCCGCATTGCCCTCTCCATCCCATCCAGCT
TCGGTGGCCGACGGTGCTGCAAGGGAGCGAGAAGATAATGGCAAACGCCT
GAGGTCACCGAGCCCTGCCGGTGGTGAAGCTTCTGGTTCCGAGGAAGCGG
AAGAGGATGATGAGCCCGCCAAATTGCATGTTTCTGGTCTAACAAGAAAC
GTGACAGAGGAGCATCTCAACGAGATATTCGCCACATTTGGGAAGCTGTC
GCGTGTGGAACTGGTACTTGACCGACGAGTGGGCTTATCGCGGGGCTTCG
CCTATGTTGAGTACGATCATCGGAAGGACGCTGAGGAAGCCCAGCTGTAC
ATGGACGGTGGTCAGCTTGACGGCGCACCTTTGAAAGTGAACTTTGTGCT
TTTGGGTGGACGGCCTGGTGGTGCAGGCGGTTTCAGCGAGACTGGTCCGA
AGGGTGGCATTCGGCGTTCCCGCTCTCCGAACAGGCGGAGCCGCAGCCGA
TCTCCTGTATCCCGTGGCGGTGGTCGAGAAAGGGACCTTTACGATCGCAA
TGGCGGTCCGCCGGAGAGGAGGGGCGGGGGAGCTCAATGGGAGGGGCGGC
GGGGCCGGTCTCGTTCTCCGCCTCGGGGGGGTCGACACGACCGAGGTCGG
TTGCCGCCAGGGCGGTTTACTCGAGGAGAGCGCGGACGCAGCCCCCCCTA
CCGTCGCCAGCCAGACCCTCGCGGCTGGTCGCCGCCACGGCGCGGGCCGG
GTGGGCGGGCATCTCCGCCTCGGGGTGGGCGGTACCGCTCTCGCTCGCCC
CCTCCGCGCCGCCGGCCCGGCTCACCCTCGCGCTCCCCGCCACGGCGACG
GGGCATGCGGCGGTCGCGCTCCTCCTCTGTCTCCAGTCGTAGTACTCGAT
CCTCGTCGTCCTCCTCCTCCTCCTCCGCGTCCTCCCGATCCAGCCGCGGT
CGCAGCCGGAGCAGCCGCTCCTCACGCAGCCGTTCCTAGATGGAGGGGGC
GGCGGCAACAGGGAAGGCAAGCAGGAGTCTCACCCGCCGCTTGAGGCTTG
AATTTTGCTTGCATGAGGGAGGGAGGACGCACGAGGGGGGAGGGTAAAAG
GGAGGATTGAAGTAAACGACAAGTGGCTGCGGAC
back to top

protein sequence of rna3941

>rna3941-protein ID=rna3941-protein|Name=rna3941|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MPPSPAAALRDKRVLGDVRSILKNLKQWPTAAQPSSQFQAVIREKFLEGH
QSSDNEASKARRQQANDYALMLKKLDRQKDIALVLSGERAPQRELVKLAA
ARCGLSVPEAPSMEGIDLEDGAKRGYTALRQTWRPNVKSDVTKKYSQKVE
EKIGKELGEGK
back to top

mRNA from alignment at CM002462.1:467575..468951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3941 ID=rna3941|Name=rna3941|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp|location=Sequence derived from alignment at CM002462.1:467575..468951+ (Nannochloropsis gaditana)
GCAAACCACCGTGATAGTCACACGTCCCCCCGCCCAACATGTCCTCTAAT
GTTTGTTTCATACACAGGTAGTGATCAATCTCTGAATGTTTAAGTAACTG
ATTTCCAATAAATGTAAATAGGCGAAAATACACAAGGGTCCGCTGACGCC
TGGCTTGCAACAGGCAGCAGAAGGTCATCATCTATCACACGTGTCTCGAG
ATAGGTTGCCCTCGGACTgatgcctccgtcccctgcCGCAGCGTTACGTG
ACAAGCGGGTAGGGAAATGTGTTTTTTGGCCGAAATTGGACATTTATACG
GCAATCTGAATAATGTTGGTCACGGTTGAACGCCATGACAGGTACTGGGC
GACGTGCGCTCGATACTTAAGAATTTAAAGCAATGGCCAACGGCTGCACA
GCCCAGCAGCCAGTTTCAAGCTGTCATTCGGGAAAAGGTATTCAACAAAG
CCATGTAGGAAAGATATGGTTCTGCCGCAAAATCGTTGATTAACACGACA
accgtccttttcttcttcagttTCTTGAAGGGCATCAATCTTCCGATAAC
GAAGCTTCGAAGGCACGCCGTCAGCAAGCAAATGATTATGCACTTATGCT
GAAAAAGTTGGATAGGCAAAAGGTGCTACATGAATAGGATCATATTGGGG
CATGCACATCATTTTTTTCATGGAGCTTTCCTCATATCACAATAGGACAT
CGCCTTAGTTTTGAGCGGAGAGCGGGCTCCACAACGAGAACTCGTGAAGT
TGGCAGCTGCACGATGTGGTTTGAGTGTACCGGAAGCACCATCGATGGAA
GGAATCGATTTGGAAGACGGTGCAAAGCGAGGATACACTGCCCTGCGACA
AACGTGGAGGCCTAATGTGAAGTCGGACGTCACGAAGAAATATAGTCAAA
AGGTTGAGGAAAAAATTGGAAAAGAattgggggaaggaaagtaagCTGAA
AAATGTAGGTTCTCACATGGCATCAATAATGTGTTGGTTCCGATGTTAAT
TTCCTGGGCAATGTGCTATATGGGCCCTTTTCTAAAAAACGCCAGTCAAA
AGTAGCAGCGGTACGTTTCGATCGTACGACATTAGGGTTATGGGCCCTAC
ACTCTTCCTCTGAGCTACGCTGCTTCTTAGTCCGAGGTCGGCAGACCCTA
ATGTTTATATTGGTCGTGCTTGTGGGTCGTACGGGACATGTGGATATGTG
GGCAAACTATTGCAAATAAAGATTTTTACATGAGAAGAGGGCGCCACATC
CGCACTCCTACTTTCGGAGTGTCGGAGTTTAATAGTTTTGATGCTTCGAA
GAGCGACACGGTGGAGACCTTCGATTCTAATGCGCAACAACGCATGCATG
CAGCTTGAGGCACCGTCACCCACGAAC
back to top

Coding sequence (CDS) from alignment at CM002462.1:467575..468951+

>rna3941 ID=rna3941|Name=rna3941|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002462.1:467575..468951+ (Nannochloropsis gaditana)
atgcctccgtcccctgcCGCAGCGTTACGTGACAAGCGGGTACTGGGCGA
CGTGCGCTCGATACTTAAGAATTTAAAGCAATGGCCAACGGCTGCACAGC
CCAGCAGCCAGTTTCAAGCTGTCATTCGGGAAAAGttTCTTGAAGGGCAT
CAATCTTCCGATAACGAAGCTTCGAAGGCACGCCGTCAGCAAGCAAATGA
TTATGCACTTATGCTGAAAAAGTTGGATAGGCAAAAGGACATCGCCTTAG
TTTTGAGCGGAGAGCGGGCTCCACAACGAGAACTCGTGAAGTTGGCAGCT
GCACGATGTGGTTTGAGTGTACCGGAAGCACCATCGATGGAAGGAATCGA
TTTGGAAGACGGTGCAAAGCGAGGATACACTGCCCTGCGACAAACGTGGA
GGCCTAATGTGAAGTCGGACGTCACGAAGAAATATAGTCAAAAGGTTGAG
GAAAAAATTGGAAAAGAattgggggaaggaaagtaaatgcctccgtcccc
tgcCGCAGCGTTACGTGACAAGCGGGTACTGGGCGACGTGCGCTCGATAC
TTAAGAATTTAAAGCAATGGCCAACGGCTGCACAGCCCAGCAGCCAGTTT
CAAGCTGTCATTCGGGAAAAGttTCTTGAAGGGCATCAATCTTCCGATAA
CGAAGCTTCGAAGGCACGCCGTCAGCAAGCAAATGATTATGCACTTATGC
TGAAAAAGTTGGATAGGCAAAAGGACATCGCCTTAGTTTTGAGCGGAGAG
CGGGCTCCACAACGAGAACTCGTGAAGTTGGCAGCTGCACGATGTGGTTT
GAGTGTACCGGAAGCACCATCGATGGAAGGAATCGATTTGGAAGACGGTG
CAAAGCGAGGATACACTGCCCTGCGACAAACGTGGAGGCCTAATGTGAAG
TCGGACGTCACGAAGAAATATAGTCAAAAGGTTGAGGAAAAAATTGGAAA
AGAattgggggaaggaaagtaaatgcctccgtcccctgcCGCAGCGTTAC
GTGACAAGCGGGTACTGGGCGACGTGCGCTCGATACTTAAGAATTTAAAG
CAATGGCCAACGGCTGCACAGCCCAGCAGCCAGTTTCAAGCTGTCATTCG
GGAAAAGttTCTTGAAGGGCATCAATCTTCCGATAACGAAGCTTCGAAGG
CACGCCGTCAGCAAGCAAATGATTATGCACTTATGCTGAAAAAGTTGGAT
AGGCAAAAGGACATCGCCTTAGTTTTGAGCGGAGAGCGGGCTCCACAACG
AGAACTCGTGAAGTTGGCAGCTGCACGATGTGGTTTGAGTGTACCGGAAG
CACCATCGATGGAAGGAATCGATTTGGAAGACGGTGCAAAGCGAGGATAC
ACTGCCCTGCGACAAACGTGGAGGCCTAATGTGAAGTCGGACGTCACGAA
GAAATATAGTCAAAAGGTTGAGGAAAAAATTGGAAAAGAattgggggaag
gaaagtaaatgcctccgtcccctgcCGCAGCGTTACGTGACAAGCGGGTA
CTGGGCGACGTGCGCTCGATACTTAAGAATTTAAAGCAATGGCCAACGGC
TGCACAGCCCAGCAGCCAGTTTCAAGCTGTCATTCGGGAAAAGttTCTTG
AAGGGCATCAATCTTCCGATAACGAAGCTTCGAAGGCACGCCGTCAGCAA
GCAAATGATTATGCACTTATGCTGAAAAAGTTGGATAGGCAAAAGGACAT
CGCCTTAGTTTTGAGCGGAGAGCGGGCTCCACAACGAGAACTCGTGAAGT
TGGCAGCTGCACGATGTGGTTTGAGTGTACCGGAAGCACCATCGATGGAA
GGAATCGATTTGGAAGACGGTGCAAAGCGAGGATACACTGCCCTGCGACA
AACGTGGAGGCCTAATGTGAAGTCGGACGTCACGAAGAAATATAGTCAAA
AGGTTGAGGAAAAAATTGGAAAAGAattgggggaaggaaagtaa
back to top
Synonyms
Publications