EWM26592.1, cds3932 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26592.1
Unique Name	cds3932
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:467794..467832 +
Alignment location	CM002462.1:467916..468011 +
Alignment location	CM002462.1:468095..468196 +
Alignment location	CM002462.1:468270..468518 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26592.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g182.8103.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:467794..467832 +
CM002462.1	supercontig	CM002462.1:467916..468011 +
CM002462.1	supercontig	CM002462.1:468095..468196 +
CM002462.1	supercontig	CM002462.1:468270..468518 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26592.1 vs. NCBI_GenBank
Match: gi|585108680|gb|EWM26592.1| (hypothetical protein Naga_100001g182 [Nannochloropsis gaditana])

HSP 1 Score: 327.405 bits (838), Expect = 1.924e-113
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0

Query:    1 MPPSPAAALRDKRVLGDVRSILKNLKQWPTAAQPSSQFQAVIREKFLEGHQSSDNEASKARRQQANDYALMLKKLDRQKDIALVLSGERAPQRELVKLAAARCGLSVPEAPSMEGIDLEDGAKRGYTALRQTWRPNVKSDVTKKYSQKVEEKIGKELGEGK 161
            MPPSPAAALRDKRVLGDVRSILKNLKQWPTAAQPSSQFQAVIREKFLEGHQSSDNEASKARRQQANDYALMLKKLDRQKDIALVLSGERAPQRELVKLAAARCGLSVPEAPSMEGIDLEDGAKRGYTALRQTWRPNVKSDVTKKYSQKVEEKIGKELGEGK
Sbjct:    1 MPPSPAAALRDKRVLGDVRSILKNLKQWPTAAQPSSQFQAVIREKFLEGHQSSDNEASKARRQQANDYALMLKKLDRQKDIALVLSGERAPQRELVKLAAARCGLSVPEAPSMEGIDLEDGAKRGYTALRQTWRPNVKSDVTKKYSQKVEEKIGKELGEGK 161

The following BLAST results are available for this feature:

BLAST of EWM26592.1 vs. NCBI_GenBank

BLAST of EWM26592.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108680\|gb\|EWM26592.1\|	1.924e-113	100.00	hypothetical protein Naga_100001g182 [Nannochlorop...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3941	rna3941	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications