rna3940, rna3940 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3940
Unique Name	rna3940
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2647
Alignment location	CM002462.1:466105..467488 -

Link to JBrowse

Properties


Property Name	Value
Product	protein arginine serine-rich 45
Orig transcript id	gnl\|cribi\|Naga_100001g183.8212.mrna
Orig protein id	gnl\|cribi\|Naga_100001g183.8212
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:466105..467488 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g183	gene3791	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26701.1	cds3931	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3940	rna3940-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:466105..467488-
coding sequence from alignment at CM002462.1:466105..467488-

mRNA sequence

>rna3940 ID=rna3940|Name=rna3940|organism=Nannochloropsis gaditana|type=mRNA|length=2647bp
ATGGCCGCAGGCGGGAGCTTCACAGAGGTAGCCCACTTTCCAGGAGTAAA
ATTCAGGCATTCCATAGCTGCGTGGAACGCAGACATGCCCTTTCGAGCAC
GCAAGGATGAGACTTTCTCCGATGATGAGGAAGACGAGGAGGAGATTGTC
GTGAAGCGCGTGCGTAATCGTCTCAGTGAAAGTACAACACCTGGCATCAC
TTTAATCGCTTCGGGGTCTTCGCGTCGCCGACGGGTCCTACTTGATGACG
AGGAGGAAGAAGACGAAGAGGAGGGACACATAGAGGAGGAAAGAAAAGGT
ACAAAACACATTGTCGGGCGTTTCAATCGCTCTTTATCGGCTACAAAGGG
GCGCCGTGCCTCTTCTCTCAGCAAAGATGGACGAGTATCGGAAGATGAAG
AGGGAAGCGAGGACCTGGATGATTTTATCGTACCAGATGACTATGAGGAG
GACGACGAGTGGGATCAGCATAGGCGCGACAAGAGAAGAAAAGGGGGGGT
ATTGAAAAGCCGTAGGACAAAAAGTATCAAGGATATTATGAAAAAGGACC
TCTCATCCAGGTCGCGTCGGAAACGAAAGAGCATGGACGACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGTAGGTACAGGGGCGACATGAGTGATTTCAT
TGTGGACGATAACTATGTAGAAATGATGGATGAAAAGGAAAGCCGGTCTT
CTGTGAAGCAGACGCAAACGAAGAGGGACAGAGCTCCGCCTAGAGCGAAG
GGGCAAAGGCAGCCTGTCAACAAGGAGCATGGCAGAGAGGAGGGGAGAGC
GGGAAGGGAAGCGGCGCCGATCAAGGTCCATGCATCAGAGACGGCGCATC
GTCGGAAAATCGTTCTCGACAGCGACGATGAGGACAACGAGGCACCAGGC
GAGTACAAAGGCGGCGATCGGAACGGCGCGAGGGGTGAGGAGGAGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGA
AGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGACGATTCTGAG
TCCAGCGTTGACGAGACGCTGATACACATGCGTGCCTACGCTAAGATGGC
CCTGGAGGAGGAGGAGCGCATGCCGCTCTTCATGACGCGTCGGAAGATGA
GTCTGAGGGAGGCCTTCGCCCTTTACGTGGAAATGCTCGCCCGCAGTCTG
GCAGACCCGGGCTTCCGGTCGGGCATGCGGCGACATCCGACGGGTCAGGT
CTATGGGCGCTTCAGCAATGCCAAGAAGTTTCTAGAAGACCAGCTGTGCA
CACGGCGGGAGTCGTTGCTGGGCTCGATGCAGTGGAGGCCGCTGTGGGTG
GAGGAGCTGCGCTCGCGGCCCCGGTTCCAGTGGCTGGAGGCCATAGGTGA
GCGCCCGGACCGGTGCATGATCTGCGGGCGCCGCCGCCACCCGTGTGCTT
TCCAGGTGCTGCTCTCGGGGCCGCGCTACGACAGTCGTGTGCTGTGGGAG
AGCCGGAACTGGGAGTCGGCCTTGCCCTGCTCGGTCGAGGCGCTGGGCAC
GCCGGAGGAGGCGGAGGAGGAGAGGCAGAGGGAGGAGAAGTGGGAGGAGG
AGGAGGCGAGAAGGCGGGAAGAGGAGGGGGAGGAGGAGGAGGAGGGGGTG
AGAGAAGGGAGGAGCAACGGCTGGTGGGACGCGGGATCCACGTGCCAGTA
CAAGTCCCTGTGCTACTCACGGATGACCCACTACAAGTACTGCCTCCTCC
GTCGCATCGCGCGGCGCTTGAAAGGCTTCGCCACTGGCGGGGCGCGCTCT
CGGCGGGGGCAACGGGCGCGCGAGGGGGGGCCGGGCGGGCCGCGTCCGAG
GAGGAACGCTGCCGGGTCCTGGGCGGTGGTGCTGCCTGTGGCCGAGCTGA
TGCAGGAGGCGGGGTGGGTGGAGGCCGAGTTCGAGCGCATGAAGACGCTC
TTGGATTTGGTGGAGGGCATGATGATGGACAAGCGCGCGTCGGCGAGCAA
GACGCTTGAGCGGATCGAGCACCTGTGGACTGATGAGGAGGGCGGGGGAT
TTGCAGGAGGGCGGGGAGAGGGGCAGCGTCGAGAGAAAAGAGAGGACCAG
GAGTGCGAGGAGGAGGATGAGGAGGAGGGTTTGGTTTTCGTGCCGGGGCG
ACGGGGCTACAACCCTCTCGTGTAAGAGGGGGGCCTGCCCTCCTGAGAAA
GCCTGCAGCCCTCTCGAACAGGAGGCCAGAGCTCTCTGGAGGAGGAAGGG
GGATTGAGCGGGATGATGGAAGAAGAGTGGGATGGAGAAGATTCTCAATG
CGTTGCGAGCAAAATGGAGGTGAAAGGAAGAACAAAGGCAAAGCGAAGAG
GCGAGAAAGTCGAACTCGCGTCTCACATCGGTGTCCGCAGCCACTTGTCG
TTTACTTCAATCCTCCCTTTTACCCTCCCCCCTCGTGCGTCCTCCCTCCC
TCATGCAAGCAAAATTCAAGCCTCAAGCGGCGGGTGAGACTCCTGCTTGC
CTTCCCTGTTGCCGCCGCCCCCTCCATCTAGGAACGGCTGCGTGAGGAGC
GGCTGCTCCGGCTGCGACCGCGGCTGGATCGGGAGGACGCGGAGGAGGAG
GAGGAGGACGACGAGGATCGAGTACTACGACTGGAGACAGAGGAGGA

protein sequence of rna3940

>rna3940-protein ID=rna3940-protein|Name=rna3940|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRY
DSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEP
AKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYD
HRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRR
SRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRS
PPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASP
PRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSS
SSSASSRSSRGRSRSSRSSRSRS

mRNA from alignment at CM002462.1:466105..467488-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3940 ID=rna3940|Name=rna3940|organism=Nannochloropsis gaditana|type=mRNA|length=1384bp|location=Sequence derived from alignment at CM002462.1:466105..467488- (Nannochloropsis gaditana)
CCTGCTTCGGATGTGATGATGACCCCCCGTACTTCATCTTCCATGACGCT
TTGAGCCGAATCCTTGGCACTAAACTCAGTGTATTATCACGTCCCTTAAT
CTCATGATATATTTAGTATGTCACGGTCGCGGTCCTGTTCCGAAGCTTCT
GCGGCCTCTTCGTCATCGGCAGCAGCAGCGTCTTCGACTCACGCCCCTTC
TTCGCGCGGAGGTAACCTAGAAGATGTTACAACGAAGTCCGAGCACGACG
AAAATAGGCAGCGATATGATTCCGCATTGCCCTCTCCATCCCATCCAGCT
TCGGTGGCCGACGGTGCTGCAAGGGAGCGAGAAGATAATGGCAAACGCCT
GAGGTCACCGAGCCCTGCCGGTGGTGAAGCTTCTGGTTCCGAGGAAGCGG
AAGAGGATGATGAGCCCGCCAAATTGCATGTTTCTGGTCTAACAAGAAAC
GTGACAGAGGAGCATCTCAACGAGATATTCGCCACATTTGGGAAGCTGTC
GCGTGTGGAACTGGTACTTGACCGACGAGTGGGCTTATCGCGGGGCTTCG
CCTATGTTGAGTACGATCATCGGAAGGACGCTGAGGAAGCCCAGCTGTAC
ATGGACGGTGGTCAGCTTGACGGCGCACCTTTGAAAGTGAACTTTGTGCT
TTTGGGTGGACGGCCTGGTGGTGCAGGCGGTTTCAGCGAGACTGGTCCGA
AGGGTGGCATTCGGCGTTCCCGCTCTCCGAACAGGCGGAGCCGCAGCCGA
TCTCCTGTATCCCGTGGCGGTGGTCGAGAAAGGGACCTTTACGATCGCAA
TGGCGGTCCGCCGGAGAGGAGGGGCGGGGGAGCTCAATGGGAGGGGCGGC
GGGGCCGGTCTCGTTCTCCGCCTCGGGGGGGTCGACACGACCGAGGTCGG
TTGCCGCCAGGGCGGTTTACTCGAGGAGAGCGCGGACGCAGCCCCCCCTA
CCGTCGCCAGCCAGACCCTCGCGGCTGGTCGCCGCCACGGCGCGGGCCGG
GTGGGCGGGCATCTCCGCCTCGGGGTGGGCGGTACCGCTCTCGCTCGCCC
CCTCCGCGCCGCCGGCCCGGCTCACCCTCGCGCTCCCCGCCACGGCGACG
GGGCATGCGGCGGTCGCGCTCCTCCTCTGTCTCCAGTCGTAGTACTCGAT
CCTCGTCGTCCTCCTCCTCCTCCTCCGCGTCCTCCCGATCCAGCCGCGGT
CGCAGCCGGAGCAGCCGCTCCTCACGCAGCCGTTCCTAGATGGAGGGGGC
GGCGGCAACAGGGAAGGCAAGCAGGAGTCTCACCCGCCGCTTGAGGCTTG
AATTTTGCTTGCATGAGGGAGGGAGGACGCACGAGGGGGGAGGGTAAAAG
GGAGGATTGAAGTAAACGACAAGTGGCTGCGGAC

Coding sequence (CDS) from alignment at CM002462.1:466105..467488-

>rna3940 ID=rna3940|Name=rna3940|organism=Nannochloropsis gaditana|type=CDS|length=1122bp|location=Sequence derived from alignment at CM002462.1:466105..467488- (Nannochloropsis gaditana)
ATGTCACGGTCGCGGTCCTGTTCCGAAGCTTCTGCGGCCTCTTCGTCATC
GGCAGCAGCAGCGTCTTCGACTCACGCCCCTTCTTCGCGCGGAGGTAACC
TAGAAGATGTTACAACGAAGTCCGAGCACGACGAAAATAGGCAGCGATAT
GATTCCGCATTGCCCTCTCCATCCCATCCAGCTTCGGTGGCCGACGGTGC
TGCAAGGGAGCGAGAAGATAATGGCAAACGCCTGAGGTCACCGAGCCCTG
CCGGTGGTGAAGCTTCTGGTTCCGAGGAAGCGGAAGAGGATGATGAGCCC
GCCAAATTGCATGTTTCTGGTCTAACAAGAAACGTGACAGAGGAGCATCT
CAACGAGATATTCGCCACATTTGGGAAGCTGTCGCGTGTGGAACTGGTAC
TTGACCGACGAGTGGGCTTATCGCGGGGCTTCGCCTATGTTGAGTACGAT
CATCGGAAGGACGCTGAGGAAGCCCAGCTGTACATGGACGGTGGTCAGCT
TGACGGCGCACCTTTGAAAGTGAACTTTGTGCTTTTGGGTGGACGGCCTG
GTGGTGCAGGCGGTTTCAGCGAGACTGGTCCGAAGGGTGGCATTCGGCGT
TCCCGCTCTCCGAACAGGCGGAGCCGCAGCCGATCTCCTGTATCCCGTGG
CGGTGGTCGAGAAAGGGACCTTTACGATCGCAATGGCGGTCCGCCGGAGA
GGAGGGGCGGGGGAGCTCAATGGGAGGGGCGGCGGGGCCGGTCTCGTTCT
CCGCCTCGGGGGGGTCGACACGACCGAGGTCGGTTGCCGCCAGGGCGGTT
TACTCGAGGAGAGCGCGGACGCAGCCCCCCCTACCGTCGCCAGCCAGACC
CTCGCGGCTGGTCGCCGCCACGGCGCGGGCCGGGTGGGCGGGCATCTCCG
CCTCGGGGTGGGCGGTACCGCTCTCGCTCGCCCCCTCCGCGCCGCCGGCC
CGGCTCACCCTCGCGCTCCCCGCCACGGCGACGGGGCATGCGGCGGTCGC
GCTCCTCCTCTGTCTCCAGTCGTAGTACTCGATCCTCGTCGTCCTCCTCC
TCCTCCTCCGCGTCCTCCCGATCCAGCCGCGGTCGCAGCCGGAGCAGCCG
CTCCTCACGCAGCCGTTCCTAG

Synonyms

Publications