EWM26701.1, cds3931 (CDS) Nannochloropsis gaditana

Overview
NameEWM26701.1
Unique Namecds3931
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:466250..467371 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26701.1
Productprotein arginine serine-rich 45
Orig transcript idgnl|cribi|Naga_100001g183.8212.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:466250..467371 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|585108789|gb|EWM26701.1| (protein arginine serine-rich 45 [Nannochloropsis gaditana])

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0 
Query:    1 MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASPPRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSSSSSASSRSSRGRSRSSRSSRSRS 373
            MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASPPRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSSSSSASSRSSRGRSRSSRSSRSRS
Sbjct:    1 MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASPPRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSSSSSASSRSSRGRSRSSRSSRSRS 373
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|553195025|ref|XP_005856075.1| (RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526] >gi|422292984|gb|EKU20285.1| RNA-binding protein with serine-rich domain 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 697.582 bits (1799), Expect = 0.000e+0
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0 
Query:    1 MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASPPRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSSSSSASSRSSRGRSRSSRSSRSRS 373
            MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASPPRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSSSSSASSRSSRGRSRSSRSSRSRS
Sbjct:    2 MSRSRSCSEASAASSSSAAAASSTHAPSSRGGNLEDVTTKSEHDENRQRYDSALPSPSHPASVADGAAREREDNGKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVLLGGRPGGAGGFSETGPKGGIRRSRSPNRRSRSRSPVSRGGGRERDLYDRNGGPPERRGGGAQWEGRRGRSRSPPRGGRHDRGRLPPGRFTRGERGRSPPYRRQPDPRGWSPPRRGPGGRASPPRGGRYRSRSPPPRRRPGSPSRSPPRRRGMRRSRSSSVSSRSTRSSSSSSSSSASSRSSRGRSRSSRSSRSRS 374
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|672126127|ref|XP_008786503.1| (PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X2 [Phoenix dactylifera])

HSP 1 Score: 119.013 bits (297), Expect = 1.751e-26
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   75 GKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
            G+R RSPSP    AS   +A    E   LH++ L+RNV+E HL EIF+ FG++  VEL +DR V L RG+ YVE+  R DAE+A LYMDGGQ+DG  ++V F L
Sbjct:   72 GRRGRSPSPLPKRASPPRKASPVSESVVLHINHLSRNVSEAHLKEIFSNFGEIVNVELTMDRIVNLPRGYGYVEFRKRSDAEKALLYMDGGQIDGNVIRVKFTL 175
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|672126123|ref|XP_008786501.1| (PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X1 [Phoenix dactylifera] >gi|672126125|ref|XP_008786502.1| PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 118.242 bits (295), Expect = 3.992e-26
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   75 GKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
            G+R RSPSP    AS   +A    E   LH++ L+RNV+E HL EIF+ FG++  VEL +DR V L RG+ YVE+  R DAE+A LYMDGGQ+DG  ++V F L
Sbjct:   72 GRRGRSPSPLPKRASPPRKASPVSESVVLHINHLSRNVSEAHLKEIFSNFGEIVNVELTMDRIVNLPRGYGYVEFRKRSDAEKALLYMDGGQIDGNVIRVKFTL 175
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|672126129|ref|XP_008786504.1| (PREDICTED: serine/arginine-rich splicing factor SR45-like isoform X3 [Phoenix dactylifera])

HSP 1 Score: 117.087 bits (292), Expect = 8.441e-26
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   75 GKRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
            G+R RSPSP    AS   +A    E   LH++ L+RNV+E HL EIF+ FG++  VEL +DR V L RG+ YVE+  R DAE+A LYMDGGQ+DG  ++V F L
Sbjct:   72 GRRGRSPSPLPKRASPPRKASPVSESVVLHINHLSRNVSEAHLKEIFSNFGEIVNVELTMDRIVNLPRGYGYVEFRKRSDAEKALLYMDGGQIDGNVIRVKFTL 175
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|1002836467|ref|XP_006646704.2| (PREDICTED: serine/arginine-rich splicing factor SR45-like [Oryza brachyantha])

HSP 1 Score: 115.161 bits (287), Expect = 5.548e-25
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:   76 KRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
            K+ RSPSP   +A+   +A    E   LH+  L+RNV E HL EIF  FG++  VEL +DR V L RG+ Y+E+  R DAE+A LYMDGGQ+DG  +K+ F L
Sbjct:   82 KKGRSPSPPPKKATPPRKASPAPESVVLHIDHLSRNVNEAHLKEIFGKFGEVVNVELSMDRMVNLPRGYGYIEFKKRSDAEKALLYMDGGQIDGNVVKLRFTL 184
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|514787432|ref|XP_004971329.1| (PREDICTED: serine/arginine-rich splicing factor SR45 [Setaria italica] >gi|944244391|gb|KQL08699.1| hypothetical protein SETIT_001545mg [Setaria italica])

HSP 1 Score: 114.005 bits (284), Expect = 1.451e-24
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:   76 KRLRSPSPAGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
            K++RSPSP   +AS   +A    E   + +  L+RNV E HL EIF  FG++  VEL +DR V L RG+ YVE+  R DAE+A LYMDGGQ+DG  +K+ F L
Sbjct:   81 KKVRSPSPPPKKASSPRKASPPAESTVICIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRLVNLPRGYGYVEFKKRADAEKALLYMDGGQIDGNVVKLRFTL 183
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|1072901657|ref|XP_018481148.1| (PREDICTED: serine/arginine-rich splicing factor SR45 isoform X1 [Raphanus sativus])

HSP 1 Score: 112.849 bits (281), Expect = 2.309e-24
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0 
Query:   79 RSPSP-AGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
            RSP P + G +S S++A    E   LHV  L+RNV E HL EIF  FG++  VEL +DR V L +G+AYVE+  R DAE+AQL+MDGGQ+DG+ +K  F L
Sbjct:   71 RSPPPQSKGASSPSKKATPIQESLVLHVDSLSRNVNEGHLKEIFGNFGEVVHVELAMDRAVNLPKGYAYVEFKARADAEKAQLFMDGGQIDGSVVKAKFTL 171
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|727433545|ref|XP_010497979.1| (PREDICTED: serine/arginine-rich splicing factor SR45 [Camelina sativa])

HSP 1 Score: 112.464 bits (280), Expect = 3.967e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   75 GKRLRSPSP-AGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
             +R RSP P + G +S S++A    E   LH+  L+RNV E HL EIF  FG++  VEL +DR V L RG AYVE+  R DAE+AQL+MDGGQ+DG  +K +F L
Sbjct:   74 ARRGRSPPPQSKGASSPSKKAAPTQESLVLHIGSLSRNVNEGHLKEIFGNFGEVIHVELAIDRAVNLPRGHAYVEFKARADAEKAQLFMDGGQIDGNVVKASFTL 178
[Close]
BLAST of EWM26701.1 vs. NCBI_GenBank
Match: gi|727607340|ref|XP_010476773.1| (PREDICTED: serine/arginine-rich splicing factor SR45-like [Camelina sativa])

HSP 1 Score: 112.464 bits (280), Expect = 4.184e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   75 GKRLRSPSP-AGGEASGSEEAEEDDEPAKLHVSGLTRNVTEEHLNEIFATFGKLSRVELVLDRRVGLSRGFAYVEYDHRKDAEEAQLYMDGGQLDGAPLKVNFVL 178
             +R RSP P + G +S S++A    E   LH+  L+RNV E HL EIF  FG++  VEL +DR V L RG AYVE+  R DAE+AQL+MDGGQ+DG  +K +F L
Sbjct:   74 ARRGRSPPPQSKGASSPSKKAAPTQESLVLHIGSLSRNVNEGHLKEIFGNFGEVIHVELAIDRAVNLPRGHAYVEFKARADAEKAQLFMDGGQIDGNVVKASFTL 178
The following BLAST results are available for this feature:
BLAST of EWM26701.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108789|gb|EWM26701.1|0.000e+0100.00protein arginine serine-rich 45 [Nannochloropsis g... [more]
gi|553195025|ref|XP_005856075.1|0.000e+0100.00RNA-binding protein with serine-rich domain 1, par... [more]
gi|672126127|ref|XP_008786503.1|1.751e-2651.92PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|672126123|ref|XP_008786501.1|3.992e-2651.92PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|672126129|ref|XP_008786504.1|8.441e-2651.92PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|1002836467|ref|XP_006646704.2|5.548e-2549.51PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|514787432|ref|XP_004971329.1|1.451e-2449.51PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|1072901657|ref|XP_018481148.1|2.309e-2452.48PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|727433545|ref|XP_010497979.1|3.967e-2451.43PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|727607340|ref|XP_010476773.1|4.184e-2451.43PREDICTED: serine/arginine-rich splicing factor SR... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3940rna3940Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications