rna3933, rna3933 (mRNA) Nannochloropsis gaditana

Overview
Namerna3933
Unique Namerna3933
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length669
Alignment locationCM002462.1:447806..448570 +

Link to JBrowse

Properties
Property NameValue
ProductArchease domain protein
Orig transcript idgnl|cribi|Naga_100001g190.8201.mrna
Orig protein idgnl|cribi|Naga_100001g190.8201
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:447806..448570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g190gene3784Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3933rna3933-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26690.1cds3924Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3933 ID=rna3933|Name=rna3933|organism=Nannochloropsis gaditana|type=mRNA|length=669bp
ATGGTTTGTATTCGGCAAGCGTGTGCGGAGGACTTATTACAAATTCAGGC
GACCAACCTGTGGTGCTTGCCAGAGAATTACCAGATGAAGTACTACTTTT
ATCACATCCTATCGTGGCCCCAACTCCTCTTCGTGGCCGAGGATCACCGT
CAACGCATTGTGGGTTACGTCCTTGCTAAAATGGAAGAGGACGCTGCGGT
ACCACACGGGCACATCACATCTCTGGCAGTTCTACGGACGTACCGGAAAT
GCGGCATTGCCACCCGCCTCATGCAGGCGTCGCAAAGGTGCATGGCGGAG
ACATTTGAAGCTCAATACGTGTCGTTGCACGTGCGAAAGAGCAACAGCGC
GGCCATTCACCTTTACACGAAGACATTGGGATACGAGATCCACGACGAGG
AGAAGGCTTACTACGCAGACGGAGAGGACGCATATGACATGCGCAAGTAC
CTTAACAAGTGTGACTTGATGCTTCCCTCCATCCCCGCGGTAACGAACTC
GTCTCATGCGCCGGCAAGTTCCCAAGTGTCTGCAATTGTCGAGCCGAAAG
TAAGCATCAGTGGCAGGCAAGGAGAGCACGGTCAAAAAATAGTTTCTGAT
ACAGAACAGTTGGCGGAAAACCTGGGTGAGATGGGCGTGGAGGATGTCGA
GAGGAACAGATTAGACTAG
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protein sequence of rna3933

>rna3933-protein ID=rna3933-protein|Name=rna3933|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MEEEWKPLPRRGTKKRRRVRPENGGEGAPCQDTQEGHVKATCLGESGQPP
QKPLDTSQMQQVTAAVRRRAAEHRPERGEDMGNDGVAGEFYEYLDHTADV
QLHAWGKDLTHAFENIVPCMLNYMTDLSKVDVDPSQTQTFEVEGHDLSSL
LFAWLDEFLFRFSSEAFVCKEAKILEFVRPLENANTSSKSTGGAVGKLNE
GERQGKYTIKVQAEGETFTLTKHPQGTEVKAITYSAMQIHENEGRADLYV
IIDI
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mRNA from alignment at CM002462.1:447806..448570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3933 ID=rna3933|Name=rna3933|organism=Nannochloropsis gaditana|type=mRNA|length=765bp|location=Sequence derived from alignment at CM002462.1:447806..448570+ (Nannochloropsis gaditana)
atggaagaggaatggaaaCCCTTGCCCAGGAGAGGAACAAAGAAAAGACG
GCGTGTCAGGCCTGAAaatggcggggagggtgctCCATGCCAAGATACTC
AAGAGGGGCATGTGAAAGCGACATGTCTGGGAGAATCTGGCCAGCCGCCC
CAGAAACCACTAGACACATCGCAAATGCAACAAGTTACGGCCGCGGTAAG
ACGAAGAGCAGCAGAGCATCGGCCAGAACGTGGAGAGGACATGGGTAATG
ATGGTGTGGCCGGCGAGTTCTACGAATATCTAGACCATACAGCGGACGTG
CAGCTACACGCGTGGGGGAAGGACCTCACGCATGCATTCGAGAACATTGT
ACCATGCATGCTCAACTACATGACAGATCTGTCGAAGGTGGACGTGGACC
CTTCGCAGACGCAGACtttcgaggtggagggccatGATCTCTCGTCCTTG
TTATTTGCCTGGTTGGACGAGTTCCTGTTTCGCTTTAGCTCCGAGGCATT
CGTGTGCAAGGAGGCAAAAATATTGGAGTTTGTGCGTCCTTTAGAAAACG
CAAACACATCTTCGAAAAGTACCGGGGGGGCAGTCGGGAAATtgaacgag
ggggagaggcaaggGAAGTATACCATCAAGGTAcaagcggagggagagac
atTCACTCTGACCAAGCACCCGCAGGGAACTGAGGTAAAAGCAATCACGT
ATTCAGCCATGCAAATCCACGAGAACGAGGGACGTGCAGACCTATACGTG
ATAATAGACATATAA
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Coding sequence (CDS) from alignment at CM002462.1:447806..448570+

>rna3933 ID=rna3933|Name=rna3933|organism=Nannochloropsis gaditana|type=CDS|length=765bp|location=Sequence derived from alignment at CM002462.1:447806..448570+ (Nannochloropsis gaditana)
atggaagaggaatggaaaCCCTTGCCCAGGAGAGGAACAAAGAAAAGACG
GCGTGTCAGGCCTGAAaatggcggggagggtgctCCATGCCAAGATACTC
AAGAGGGGCATGTGAAAGCGACATGTCTGGGAGAATCTGGCCAGCCGCCC
CAGAAACCACTAGACACATCGCAAATGCAACAAGTTACGGCCGCGGTAAG
ACGAAGAGCAGCAGAGCATCGGCCAGAACGTGGAGAGGACATGGGTAATG
ATGGTGTGGCCGGCGAGTTCTACGAATATCTAGACCATACAGCGGACGTG
CAGCTACACGCGTGGGGGAAGGACCTCACGCATGCATTCGAGAACATTGT
ACCATGCATGCTCAACTACATGACAGATCTGTCGAAGGTGGACGTGGACC
CTTCGCAGACGCAGACtttcgaggtggagggccatGATCTCTCGTCCTTG
TTATTTGCCTGGTTGGACGAGTTCCTGTTTCGCTTTAGCTCCGAGGCATT
CGTGTGCAAGGAGGCAAAAATATTGGAGTTTGTGCGTCCTTTAGAAAACG
CAAACACATCTTCGAAAAGTACCGGGGGGGCAGTCGGGAAATtgaacgag
ggggagaggcaaggGAAGTATACCATCAAGGTAcaagcggagggagagac
atTCACTCTGACCAAGCACCCGCAGGGAACTGAGGTAAAAGCAATCACGT
ATTCAGCCATGCAAATCCACGAGAACGAGGGACGTGCAGACCTATACGTG
ATAATAGACATATAA
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Synonyms
Publications