rna393, rna393 (mRNA) Nannochloropsis gaditana

Overview
Namerna393
Unique Namerna393
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1639
Alignment locationCM002455.1:975176..977113 +

Link to JBrowse

Properties
Property NameValue
Productprotein mpv17
Orig transcript idgnl|cribi|Naga_100003g93.1722.mrna
Orig protein idgnl|cribi|Naga_100003g93.1722
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:975176..977113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g93gene378Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna393rna393-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30205.1cds393Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna393 ID=rna393|Name=rna393|organism=Nannochloropsis gaditana|type=mRNA|length=1639bp
CTTGTCCCGATACACTTCATTGGTTGTCATTCACCATCACCCATAACAAT
GGTCAAGCCCTCAAGTAGCTCACATTCCTCCCGCCTCTCATCATCATCAG
GGCCCATCTCTCGCTGAAAGCCCTCAAACCCTTGGTCCTATCAATCTTCC
CGTGAATCATAAAGTTAAAAGCTGATGGCAACGAAAATGAGCCGATCGGG
CCTAGTATTTGGAACAGCGACGGCTCTTATCATCGCATATTCAGCAATGG
CCTTCAGTCCTGGAGGTGTAGGCATGGCGCTTCCTCTTGTCTTGGGCAAC
ACGTATATGAACAGTAAGTAAAGTCTGCCATCAATTGAGGTACGATGCTT
GCTCGAGTTTAAGCTGTGCGTATCATTTTTGTGCTCTAGCTAAGCTTTCT
GGTTCGTTGCTGCAACTGATGAAAGATTTCAACGACAAAATGCCCGCAGC
CACATTCGATGTTTGAGGTTGTCACTATTGTGATAAATCGACCGTATATC
TCTCTTTGCAAGCTTGATAAGCGCTGTAACTGAAGCCAACCTCAATTCCC
TAATGTACTCGGCGCGCACAGACTTCTTCATCTGGACAACCCTTACGAGC
GCATTCACAGAGACTTCAGGCCTTAAAGTGTCGCTTGACTTACTGGTTCT
GATATGGCTTGTGAGCCGCATCGGCCCTTTAGAGGACTTACTTGAACCTG
TCCGGCTGGCGGCGCTGACAATTATAGCCGCAGTGGGCTCAGCTTTATGC
ACGAGCGTTTTGGTTTTCATGTTTTATGTCGTCACTCGGTGGGAAACCCT
GTTTTTCACCCCAATTTACGGTTATGGTCCTATTTTGATGGCCTACTTTA
TTCTTACAGCGCAGAAAGTGCCCACGGAGGCCTTTTTTTCACCTCCGAAT
ATTTTTCGCGGCGTTTTCCCGTCCTTCTGCATGCAGCAGCTGCCCTTCAC
ATTTTTCTGTGTCTCGGCGCTTCTCCGCGCGCTCCTTCCAATTCGGTTTG
CAGTAGCGGGAAGCATGACAATGGATTTCCCCCTCCTGGCTTGCTCTTTC
GCTGTGTCATGGTTATACCTCCGATTTTTCCAGCACAACAGCGATGGCTC
CGTCGGGGACACGTCCGAAGATTTCCAATTGGTCAACTTGTTCCCTAGTT
TTTCACGTCCTTATTTGCGACCAGTGTTCGACTTCTGCTACGGTGTCTTG
GCTCTCTGTGGACAATGCAAAGAGCGAGAGCTCGCCATGGCGTCGAATTT
AATAGAGGAAGAGGAGAATTTATTGCTCGGGAAAGACTATTTTACAAGCC
GGGCCAGCAACGACGTTCAAAATCATTCTCTACAGGATCAGAGATGCAAT
ATTCACGGGGAAACCCCTGAAAATCGTTCAAAGACTGATTCTGTGACAGA
ACGAAGAAGGATTAAGGCTCTCCAGGCACTTGAGACACGCCTTCATAGCA
TAGCAGCGAAAGAAAAGGAAGTTTCCAAACTAAACGTGGCTTCAAGAACA
GTTGATGAAGCGGCGCAGACCACGGCCGATGTTTGAATGGGTCCTTAGAA
AATCTGTTAATTTTTTCGGTGAAAATAAGCACCACACCAGAGATCTTTTG
CTGTTTTCGCATTTTTTTCCCACCCAAAAGGGAGCATTC
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protein sequence of rna393

>rna393-protein ID=rna393-protein|Name=rna393|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALT
GAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCG
NNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPAT
VVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQE
MNRSSRKNQQANPSSCGLH
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mRNA from alignment at CM002455.1:975176..977113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna393 ID=rna393|Name=rna393|organism=Nannochloropsis gaditana|type=mRNA|length=1938bp|location=Sequence derived from alignment at CM002455.1:975176..977113+ (Nannochloropsis gaditana)
ACTTGGAAACTCGGGAGGGCTGAAAGGGCGCACGGAAAGCAACGTGGACG
GTGGCGACCACTCGCACATTCGTCAGCTTGAAGCTGGTCAGCAAGGTATT
TTTTAACTTTCCGCACGCGCATTAAACACCAGGGATATATTTCGAAATTA
AAAATACGGTTGAGTTCCTGTACTTGTTTCGGGCTGGCACCGGCGTGCTC
CATCGAGGTAGGTCTATATGACAGGAAAAGCTGACATTCAATAAGCGCCT
CGACGGTATATAAGGTGTGAGGCCAGCGAATCCTTTCTTATATTTTACTA
TCCTCCTCAGGTCCCAGGGCCACCCGCATTGCCCATAACCCCTTTACTCA
attcttcttcatttttatAAGCATGGCCTCGAGGTACATTCGGCGCCACC
CGATGCTATGTAATGCAGTCCTTCCCGGCACCTTGGCGATTGCTTGTGGG
GACGTACTATGCCAGCAACTTGAAGGCAAAAAAGAGATTTGCAAAGAGCG
GACAGCCCGCATGGCGCTCACAGGGGCTGTTCTTGTGACTCCACTTTCTT
TTTACTTGGGGTCCAAAATAGATCGTGTTGTCCCGAAAGGTGAGTTGGTG
CGAGGACATGGAATGAGTATTATGTAGCATCTCAACGCGGACGATAGCTC
ACTTGTTTGATTCATTTCTCACAAAGCTGTCGATGGATGTCGTCGAGGGC
TCACAGCTCTCGTTACCTGCTTTCCTGCGCATGCTGTTGTGCGTCTCGAA
CGTGAGTTTATGAAGGCCTTTCCAATCTTCTCTCGCATGCATTCACAGTT
GACACTGCCGCCGCGACACTCGCCAAATCCGGCCTCAACGCTGCATGCTC
GGTAATCTTTATCATCGGCAGCTTTTGTGGAAACAATCTTTTACAAGGCC
GTGGCCTGGATGTACTGCGCGCTCAGCTTCGGGAGCGGCTTTTACCGACA
TATGCAGCAGGTCTCGCGTATTGGTCCGGAGCAAATCTGTTGCTCTTCTC
GGGCCTGGTGCCGCAAACAGTGCCTGCAACGGTGGTCTTTTCGATAGTAT
GGAATGTCAAGATGAGCAGTGCCTTGAACAAGAAGACTCCAGAAGCTGAA
GCTGCCCTGGCCCGGGAGAAAGCATCCTTGGGCcggaggggatggggcgg
CGTCCAGGCGCTGGGGCCGGTCCAGCAGGAGATGAACAGGAGCAGTAGGA
AGAATCAACAGGCCAATCCGTCGAGCTGTGGCCTGCATTAGAACGTATAT
ATGGGCGAGCTATTGAATGCAACGCCTCGGCCGGTGAGACGCGCGGTCCG
GCTCGGTCGGCGTGTTGCGGTGTACCTATAAACTTTGGATAGGGGAAACC
AAATTGTTTTTTAAAAGTTTAAAAATGACCTTCATTAAGAATACAAGTGC
ATTCTGCAGCTAAGTCTGCTCGTATCGAGCGCAATGGCGATTGCAAGCTT
CACGGGCGTTACATCCGCGGGCGGTTTGATGCAATGCCATCCCCTAGTGT
AGGACGATTGGTTTCGAGAGTATAGGGAGATAGCTAAAATACCCAATTTT
GTGACCACGTAGTCAGATGCCTGCAAAATGCACACGCTGTGCATCGACGT
GGACAACTGTATGCTGTGCGGAGTTGAGGGAATGGTTCGGCTGCCTCGAT
CCGCAGGCTTGCTTAAACGATCTTTCTGGCCAGAGCTATAAAAGTAGTAT
CAACACCAATGTTAACCCCTTCGCGTCTATGTGAGTAGGGAGGGTACAAC
CATTGTCGCCAGGCAGGCAAGTACGGATACGCGTGCAGGTGCCCCTCGAt
cactttttctttttctcctctgcATGTATGTGAATGTATATATCAGACGA
GGTCTTTGGCCTAGTCTTATGTATGAGTACATGCGAACCATGGGCTCAGT
CTCTGCTCTGGGCCTTAATAACTGAACTTGAGTAAAAG
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Coding sequence (CDS) from alignment at CM002455.1:975176..977113+

>rna393 ID=rna393|Name=rna393|organism=Nannochloropsis gaditana|type=CDS|length=1320bp|location=Sequence derived from alignment at CM002455.1:975176..977113+ (Nannochloropsis gaditana)
ATGGCCTCGAGGTACATTCGGCGCCACCCGATGCTATGTAATGCAGTCCT
TCCCGGCACCTTGGCGATTGCTTGTGGGGACGTACTATGCCAGCAACTTG
AAGGCAAAAAAGAGATTTGCAAAGAGCGGACAGCCCGCATGGCGCTCACA
GGGGCTGTTCTTGTGACTCCACTTTCTTTTTACTTGGGGTCCAAAATAGA
TCGTGTTGTCCCGAAAGTTGACACTGCCGCCGCGACACTCGCCAAATCCG
GCCTCAACGCTGCATGCTCGGTAATCTTTATCATCGGCAGCTTTTGTGGA
AACAATCTTTTACAAGGCCGTGGCCTGGATGTACTGCGCGCTCAGCTTCG
GGAGCGGCTTTTACCGACATATGCAGCAGGTCTCGCGTATTGGTCCGGAG
CAAATCTGTTGCTCTTCTCGGGCCTGGTGCCGCAAACAGTGCCTGCAACG
GTGGTCTTTTCGATAGTATGGAATGTCAAGATGAGCAGTGCCTTGAACAA
GAAGACTCCAGAAGCTGAAGCTGCCCTGGCCCGGGAGAAAGCATCCTTGG
GCcggaggggatggggcggCGTCCAGGCGCTGGGGCCGGTCCAGCAGGAG
ATGAACAGGAGCAGTAGGAAGAATCAACAGGCCAATCCGTCGAGCTGTGG
CCTGCATTAGATGGCCTCGAGGTACATTCGGCGCCACCCGATGCTATGTA
ATGCAGTCCTTCCCGGCACCTTGGCGATTGCTTGTGGGGACGTACTATGC
CAGCAACTTGAAGGCAAAAAAGAGATTTGCAAAGAGCGGACAGCCCGCAT
GGCGCTCACAGGGGCTGTTCTTGTGACTCCACTTTCTTTTTACTTGGGGT
CCAAAATAGATCGTGTTGTCCCGAAAGTTGACACTGCCGCCGCGACACTC
GCCAAATCCGGCCTCAACGCTGCATGCTCGGTAATCTTTATCATCGGCAG
CTTTTGTGGAAACAATCTTTTACAAGGCCGTGGCCTGGATGTACTGCGCG
CTCAGCTTCGGGAGCGGCTTTTACCGACATATGCAGCAGGTCTCGCGTAT
TGGTCCGGAGCAAATCTGTTGCTCTTCTCGGGCCTGGTGCCGCAAACAGT
GCCTGCAACGGTGGTCTTTTCGATAGTATGGAATGTCAAGATGAGCAGTG
CCTTGAACAAGAAGACTCCAGAAGCTGAAGCTGCCCTGGCCCGGGAGAAA
GCATCCTTGGGCcggaggggatggggcggCGTCCAGGCGCTGGGGCCGGT
CCAGCAGGAGATGAACAGGAGCAGTAGGAAGAATCAACAGGCCAATCCGT
CGAGCTGTGGCCTGCATTAG
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Synonyms
Publications