EWM30205.1, cds393 (CDS) Nannochloropsis gaditana

Overview
NameEWM30205.1
Unique Namecds393
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:975548..975764 +
Alignment locationCM002455.1:975974..976416 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30205.1
Productprotein mpv17
Orig transcript idgnl|cribi|Naga_100003g93.1722.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:975548..975764 +
CM002455.1supercontigCM002455.1:975974..976416 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|585112864|gb|EWM30205.1| (protein mpv17 [Nannochloropsis gaditana])

HSP 1 Score: 446.817 bits (1148), Expect = 7.146e-159
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query:    1 MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSSRKNQQANPSSCGLH 219
            MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSSRKNQQANPSSCGLH
Sbjct:    1 MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSSRKNQQANPSSCGLH 219          
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|678320909|emb|CDW84001.1| (peroxisomal membrane protein 2 [Stylonychia lemnae])

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-10
Identity = 54/189 (28.57%), Postives = 81/189 (42.86%), Query Frame = 0
Query:    6 IRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICK------ERTARMALTGAVLVTP-LSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANL--LLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGR 185
            + + P L      GTL  A GD+LCQ LE K +I +      +RT   A  GA    P L F+    +  + PK  + A +          S IF+ G F   NLL G GL+     L+ + +PT  A    W   N    LF  +  Q + A +V S+ +N  +S   N    +    +  +K +L +
Sbjct:   11 LNKRPFLTKMATSGTLG-AVGDLLCQYLEKKYQISQTNEWNVKRTFNFAAMGAFFSAPILHFHFTKLLPFIAPKKSSMALSKKLIVDQLIVSPIFMAGWFTTINLLDGNGLNRSYEDLKIKFIPTMTAHWKVWPAVNFVNFLFIPIQYQVLFANMV-SLFFNSYLSYMHNSYKGDGSVNIQLKKKTLSQ 197          
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|470300569|ref|XP_004346946.1| (Mpv17 protein [Capsaspora owczarzaki ATCC 30864] >gi|765554025|gb|KJE94646.1| Mpv17 protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 67.3958 bits (163), Expect = 2.184e-10
Identity = 57/183 (31.15%), Postives = 84/183 (45.90%), Query Frame = 0
Query:    6 IRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKE--RTARMALTGAVLVTPLSFYLGSKIDRVVP--KVDTAAATLAKSGLNAACSVIFIIGSFCGN-NLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVV--FSIVWNVKMSSALNKKTPEAEAALAREKA 181
            + R P++ +A+  GTL +A GD++ QQ   +K    +  RTARMA  G   V P+     + ++++VP  K+ T  A L K  ++      FII SF  N  LL    +  +  +LR  L  T  A    W    LL F   VP      VV   S+ WN  +    ++K P  E  +A   A
Sbjct:   11 LERRPIVMSAISTGTL-MATGDLIAQQAIDRKGRDHDLVRTARMAAIGFCFVGPVMRLWYTGLEKIVPASKLSTRTAALTKMAIDQTVFAPFIISSFYVNLGLLHNDSMAQIETRLRSELKDTLIANWKVWPATQLLNFY-FVPMQHRVLVVNAVSLGWNSYLGWRAHRKDPSIEEVVAASPA 191          
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|929754970|ref|XP_014152467.1| (hypothetical protein SARC_09012 [Sphaeroforma arctica JP610] >gi|906947209|gb|KNC78565.1| hypothetical protein SARC_09012 [Sphaeroforma arctica JP610])

HSP 1 Score: 60.4622 bits (145), Expect = 9.490e-8
Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = 0
Query:   22 AIACGDVLCQQL---EGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVF----SIVWNVKMSSALNKKTPE 171
            A A GD +CQ++   +GK    K RT RM   G + + PLS    + I+ V+P  ++    + K  +N     +FI  +F  N LLQG+ +   + ++   +  T+A G  YW   + L F  ++ Q  P   +F    +++WN  +SS  NK   E
Sbjct:   22 ATALGDFICQRMGHDDGKWVWDKHRTGRMFAVG-MFMGPLSQKFHTTIELVLPG-NSNRRVMEKVFVNTLTGPLFISANFTVNTLLQGKTMSDAKDRIINDVPGTFARGTLYWPIISGLQFKLVLLQYRP---IFGSMATVLWNTYLSSVGNKAEIE 173          
The following BLAST results are available for this feature:
BLAST of EWM30205.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585112864|gb|EWM30205.1|7.146e-159100.00protein mpv17 [Nannochloropsis gaditana][more]
gi|678320909|emb|CDW84001.1|1.663e-1028.57peroxisomal membrane protein 2 [Stylonychia lemnae... [more]
gi|470300569|ref|XP_004346946.1|2.184e-1031.15Mpv17 protein [Capsaspora owczarzaki ATCC 30864] >... [more]
gi|929754970|ref|XP_014152467.1|9.490e-829.94hypothetical protein SARC_09012 [Sphaeroforma arct... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna393rna393Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications