EWM30205.1, cds393 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|585112864|gb|EWM30205.1| (protein mpv17 [Nannochloropsis gaditana]) HSP 1 Score: 446.817 bits (1148), Expect = 7.146e-159 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query: 1 MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSSRKNQQANPSSCGLH 219
MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSSRKNQQANPSSCGLH
Sbjct: 1 MASRYIRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGRRGWGGVQALGPVQQEMNRSSRKNQQANPSSCGLH 219
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|678320909|emb|CDW84001.1| (peroxisomal membrane protein 2 [Stylonychia lemnae]) HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-10 Identity = 54/189 (28.57%), Postives = 81/189 (42.86%), Query Frame = 0
Query: 6 IRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICK------ERTARMALTGAVLVTP-LSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANL--LLFSGLVPQTVPATVVFSIVWNVKMSSALNKKTPEAEAALAREKASLGR 185
+ + P L GTL A GD+LCQ LE K +I + +RT A GA P L F+ + + PK + A + S IF+ G F NLL G GL+ L+ + +PT A W N LF + Q + A +V S+ +N +S N + + +K +L +
Sbjct: 11 LNKRPFLTKMATSGTLG-AVGDLLCQYLEKKYQISQTNEWNVKRTFNFAAMGAFFSAPILHFHFTKLLPFIAPKKSSMALSKKLIVDQLIVSPIFMAGWFTTINLLDGNGLNRSYEDLKIKFIPTMTAHWKVWPAVNFVNFLFIPIQYQVLFANMV-SLFFNSYLSYMHNSYKGDGSVNIQLKKKTLSQ 197
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|470300569|ref|XP_004346946.1| (Mpv17 protein [Capsaspora owczarzaki ATCC 30864] >gi|765554025|gb|KJE94646.1| Mpv17 protein [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 67.3958 bits (163), Expect = 2.184e-10 Identity = 57/183 (31.15%), Postives = 84/183 (45.90%), Query Frame = 0
Query: 6 IRRHPMLCNAVLPGTLAIACGDVLCQQLEGKKEICKE--RTARMALTGAVLVTPLSFYLGSKIDRVVP--KVDTAAATLAKSGLNAACSVIFIIGSFCGN-NLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVV--FSIVWNVKMSSALNKKTPEAEAALAREKA 181
+ R P++ +A+ GTL +A GD++ QQ +K + RTARMA G V P+ + ++++VP K+ T A L K ++ FII SF N LL + + +LR L T A W LL F VP VV S+ WN + ++K P E +A A
Sbjct: 11 LERRPIVMSAISTGTL-MATGDLIAQQAIDRKGRDHDLVRTARMAAIGFCFVGPVMRLWYTGLEKIVPASKLSTRTAALTKMAIDQTVFAPFIISSFYVNLGLLHNDSMAQIETRLRSELKDTLIANWKVWPATQLLNFY-FVPMQHRVLVVNAVSLGWNSYLGWRAHRKDPSIEEVVAASPA 191
BLAST of EWM30205.1 vs. NCBI_GenBank
Match: gi|929754970|ref|XP_014152467.1| (hypothetical protein SARC_09012 [Sphaeroforma arctica JP610] >gi|906947209|gb|KNC78565.1| hypothetical protein SARC_09012 [Sphaeroforma arctica JP610]) HSP 1 Score: 60.4622 bits (145), Expect = 9.490e-8 Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = 0
Query: 22 AIACGDVLCQQL---EGKKEICKERTARMALTGAVLVTPLSFYLGSKIDRVVPKVDTAAATLAKSGLNAACSVIFIIGSFCGNNLLQGRGLDVLRAQLRERLLPTYAAGLAYWSGANLLLFSGLVPQTVPATVVF----SIVWNVKMSSALNKKTPE 171
A A GD +CQ++ +GK K RT RM G + + PLS + I+ V+P ++ + K +N +FI +F N LLQG+ + + ++ + T+A G YW + L F ++ Q P +F +++WN +SS NK E
Sbjct: 22 ATALGDFICQRMGHDDGKWVWDKHRTGRMFAVG-MFMGPLSQKFHTTIELVLPG-NSNRRVMEKVFVNTLTGPLFISANFTVNTLLQGKTMSDAKDRIINDVPGTFARGTLYWPIISGLQFKLVLLQYRP---IFGSMATVLWNTYLSSVGNKAEIE 173 The following BLAST results are available for this feature:
BLAST of EWM30205.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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