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Properties
| Property Name | Value |
|---|
| Product | 5-enolpyruvylshikimate-3-phosphate synthase |
| Orig transcript id | gnl|cribi|Naga_100001g192.8124.mrna |
| Orig protein id | gnl|cribi|Naga_100001g192.8124 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:441524..446152 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3929 ID=rna3929|Name=rna3929|organism=Nannochloropsis gaditana|type=mRNA|length=1930bp
CGTCCTCACTCCGATCTGCGCCTCCCAGGCCCACCCCCAGCAGCCGCTGC
TTCTTCACCTGATCCGCCTTCCGCACCGGCCTACCCTCTTCATCCAAGTC
GTTATCTTCCTCGTCGACGTCGTGGAGCTGCTGAGAACTCGGCAGATGAG
GAGCATGTGCGGGACGAGGAGCGTTACCTGCGACAGGTTCCGGCATGTGA
CCGCCACTGTCCAGATACAGCTCTAAAGCTCGTTCAACATTCCCACTTCC
CGCGTCCAGAAAGTTCTGAGCCACATGAGGGTCGACACCGTCCCCAGCCA
CCATCAGAAACCTGTCCAGCCCGCTTTGATCTGGCTGTGGGTCTGCCATA
ACAGGGCGTTTGCTTGGTGCTGCTATGCGCGTTGCCTTGTGAATTCAAGC
CCCCCGAAATGCTTTATGTCAGCTCAGGATGCCTCGCCGCGCTTTGATCT
GTGCTCTTTCTCACTTCTTCCCTTAAAGTCGTCCGGGAAATTTGTGTTTT
TTGAGTGAAGTAATTGCATGATGGCGTGATACGGGACATCATCTCGAGAA
AAGAGTTGTTCCTCCCTAGTCACGGCCAGTCTCGGCGACGCAGCGCACTC
TGGAGGGAGGCCGAGAGATACTACGAGCGAGGTCACGCGGGGAACGAGGG
ACGAATCTTTGCCAAGCAAGGGTGGCAACCCTGCCATGTATCCTCTTGTG
GAGGACCACTGATGACACAGGGGGTCACAATATAGGATCAATGGATGCAG
GAAGCAGTCAAGCCGATATGCATTCCGGACAAAGCAGGGCGCTGAAGACC
CTCCGACCTCCCCTCCCTCTGATTACGCTCGTCTCATATATTCCACATTA
GTGACGCTACAGACATTCATCATCAGCCATGGTGGCCGCCACGCTCGACC
GCAACATTTGGATCTGCGCGAGTGACGGGGATTTGAGCGGCGTGAAGGAG
TTTCTGGATGACGGGGGCTTGGACGTTAATTCAGCGGACGAGTTTGGATA
TACGTGCCTGCATGCCGCATCGTCTTATGGGCACGTGGAACTCATTCAGT
TTTTGGTGGGGCGAGGCGGGGATGTAGACGTGCGCGACCCAGATGGCGAC
ACCCCCTTACATGTATGTGAAGACGTAGCTGCAGCAGAGGCCTTGGTCAC
ACACGGTGCAGATCCACAGGCTCGCAACAACCAAGGTAAGCGGCCCCATG
ATGTAGCGCTGGAAGAGGGACATGTGGCGGTGGCCGGCTACCTGCGTCCT
TTGTGCGGATTACCTCCCTTAAGTACAGAGCAGATGCAAAGGGCAATGGT
GGCCGTCGATCAAGCGAGCAATGATGTGGAGAATGGCGGAGATGTATGTG
CTGAGAATTGTACGGCAACTTTGGCAGACTTGGAGGCATTCATAGCGAGT
TCGGGGCGGGAGGAGGAGGGCAAGGAAGCGGACGATAAGGAGTCCGAAGA
CGCGATGGAGGAGACTAACATGGCCGAATAACCCGTATCGGCATGTAGCC
TGTGTAGATACTAATGTGTAATAGCGTTTGGACGATGATATATGAACACA
TTTTGAACCCACACTGCCAAAAAATGAGCGCGTCATACGACAGCAGAAGA
CGACCAACATCATCGCAGCATGGGCATGAGTTGTTGAAATATCTTGACTT
ATGTTGTCTGATTTAAAGTTGAGAGTTGAATCCTGCTTTGAATCGGGGGT
GCTTTGGATATAATCCATGAGACACTCGTGTACCACCACCAGCCCCAGCT
GGGGATACCTATAATCACAAGAGCTTTAACGGCCACTGTGCAAGGCAGCA
AATATCCATGTGGGGCTTTATAATATCACTCTTAACTGGACTCCCGTGTT
TGTATGAGAAATGGGTGACTGCCGCCATCACAGTCTCCTTTGAATTCCTT
CAACAAAGAAATAGCAAATTTAGGAACGTC back to topprotein sequence of rna3929 >rna3929-protein ID=rna3929-protein|Name=rna3929|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MTFKAGTASSKQRKIKRHSVLILGLSLATLSTSQAFLSPARSYSLPRASA
LGFRAPLAPATESLHFVTPLNAAGAQEMEQLVVQPISTFEGEIELPGSKS
ISNRILLLSALSQGTTVVDNLLQSEDIEYMIQALLDLGIKLEKTGENQWT
VQGRGAAFDSDKPLELYLGNAGTAMRPLTAALCAGHGDFTLDGTPRMRER
PISDLVDGLQQLGVDLACSPTGCPPVTIRARGLSGGIVRISGKISSQYLS
ALLMAAPLARGDVRIEITDELVSAPYVHMTVKLMARFGVEVDNEGDGVFT
VRGGQTYRSPGQIFTEGDASSASYFLAGAAITGGRVTVRGCGSESVQGDV
YFATVLGEMGATVEWTPTSIQVTRQPGVPLKGIDVDCGAIPDAAMTLAVV
ALFAEGPTAIR back to topmRNA from alignment at CM002462.1:441524..446152- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3929 ID=rna3929|Name=rna3929|organism=Nannochloropsis gaditana|type=mRNA|length=4629bp|location=Sequence derived from alignment at CM002462.1:441524..446152- (Nannochloropsis gaditana)
TGCTTGTCGCGTGGCATTTCTGTCAGTACCACCGTATGTGAGGTCTCGCC
AGGCCACTCAGGGCGCTCGGCTGCCGCTAGGGGAGGTCGATGCCTCACTT
GGCTACCCAGACCGTAATTTCTCACCCGAGTCCCAATAAAATTTACAAAG
ATTTATTCTATACCCTTGATAACACCCTAAGATATCGCAGACGTGATTTT
GATATCGCGTTTTGAGTGCGTGTTGTTTCTAATTGTCTCTTGTACCGCCC
TCAACCACTTCAGCCTCCTCCCTTACGCAATATAGTAATAGCCTATGACA
TTCAAGGCAGGGACAGCGTCATCAAAGCAACGCAAAATCAAGAGGCACTC
TGTCTTAATTCTGGGTCTATCTCTGGCTACGCTCTCCACATCGCAAGCCT
TTCTGTCGCCCGCTCGATCTTACTCTCTGCCCCGTGCTTCAGCTTTAGGT
TTCCGAGCACCGCTCGCGCCCGCCACCGAGTCACTACACTTCGTGACGCC
ACTCAATGCCGCTGGGGCTCAGGAGATGGAGCAGCTAGTGGTTCAGCCCA
TCAGCACCTTTGAAGGAGAAATTGAACTTCCCGGAAGCAAGTCAATCAGC
AATCGCATTCTCCTCCTCTCCGCCCTGAGCCAGGGCACAACTGTCGTTGA
CAATCTGCTGCAGAGCGAGGACATTGAGTACATGATTCAAGCCCTTCTTG
ATCTAGGAATCAAGCTAGAAAAGACGGGTGAGAATCAGTGGACGGTCCAG
GGCCGAGGGGCGGCTTTCGACTCCGATAAGCCCCTAGAGCTGTACCTCGG
GAACGCTGGCACGGCCATGCGGCCCCTGACGGCCGCTTTGTGCGCGGGCC
ACGGCGACTTCACCCTGGATGGGACTCCTCGGATGCGTGAGCGCCCGATC
TCGGACCTCGTGGACGGGCTGCAGCAGCTCGGAGTCGACTTGGCCTGCTC
CCCGACGGGGTGCCCGCCCGTGACAATCCGAGCCCGAGGCCTCTCGGGGG
GTATCGTGCGCATCTCCGGCAAGATCTCCAGCCAGTATCTGTCCGCGCTG
CTGATGGCCGCGCCCCTCGCCCGCGGGGACGTGAGGATCGAGATAACGGA
CGAGCTGGTCTCGGCGCCCTACGTGCACATGACGGTCAAGTTGATGGCCC
GCTTTGGGGTGGAGGTGGACAACGAGGGGGATGGGGTCTTCACGGTCCGA
GGGGGGCAGACGTATCGGTCACCCGGGCAGATTTTCACGGAGGGAGACGC
CTCCTCGGCTTCGTACTTCCTGGCTGGCGCGGCCATCACGGGGGGCCGGG
TCACGGTCCGGGGCTGCGGCTCCGAGAGCGTGCAGGGGGACGTGTATTTC
GCGACCGTCCTGGGCGAGATGGGGGCCACGGTGGAGTGGACGCCCACCTC
GATACAAGTGACGCGGCAGCCGGGCGTGCCCCTCAAAGGCATCGACGTGG
ATTGCGGCGCCATTCCGGATGCGGCCATGACGCTGGCGGTGGTGGCGCTT
TTCGCGGAGGGGCCCACAGCCATCAGGTAGGGGTGGCTTATGCAGGGATG
TCCTCTCCCCTCTGCCTTGCCGATCCCAGATTTTCCTCACGCCTTCTTCT
TCGCGCTCTACCCTCTCCGACCACCCTCTCCAGCCACCAATCTGCCTGCG
GCCTTTATCCCCCCCTTTCTCTTGCGTCTCTCTCCCCTCACCCCCCTCGT
CTATAACTGCGCGCCTGTCCACACACGAACACACATGTCTCTCATGTCAT
CCCCCTAACCCCTCTATCCCCCTTTAGAAACGTCTACAACTGGCGCGTGA
AGGAGACGGAGCGCATGAAAGCCATCGTCACCGAACTCACGAAGCTGGGC
GCCAGCGTGGAGGAGGGCCCGGACTTCTGCATCGTGCATCCCTTGAAGGA
CGTGAGGCCGGGCGTGGCTATCGACACCTACGACGACCACCGCATGGCGA
TGTGTTTCTCCCTCGCGGCCTGTGCCGGGGTCCCTGTCAAAATCAACGAC
CCCAAGTGCGTGCGGAAGACCTTCCCGGACTACTTCGACCGACTGGCCCT
CATGAGCAAGTAGCGGTCAAGGAGGCGGGCGCTGCCGCGTGGCGTCCTGG
ATGCACTGAGAGAGAGCTAGAAGGCAGCTATAAATTAAAGCACTGAAGAG
ACGACTCAAAGAAAAGCTACCAGCCGCCTACGTGTCGGAGGCGCTCAAGT
CTCATAGCACCCTTAATCGTCAAAATTCATTAGCGTCCTCTGCTTCCGAG
CTCAGTCTATCCAACGCCCTACATCCCACCCGCAACTCAATCGCCCTGCT
TCCGTCGCGAATGCACACCCCTCCAAGAATGCCCCCCTAGCCGCCAACCA
TCATGTCTGGGGTTGAGCATCGCCTTCCCTCCTCTGCACCCATCCAACAA
GCGGCGGCCCTAGGTCTATTGGCCAGAATCTCGCCGAGCGCTTGAAGGCC
GAATTATGTGATCGAAAGCGAGGTATGCCCAACGAGCATATCCGCCAAAT
ATCGTTCCAGGATGAAGGGCTTCCCAAACACCTCCCCTCCCTCTCTCCCT
TTCTTTATCCATTCTTCCTTCTCCCTACTGGGCCATGGGCACCTTGGGCG
GGTTGGTGTCCCAGACCGCATCCAGGAGCTTCACTATCTCCCCGTACATG
CTCATCGTGATGCCTACCTCCAGGCACACGCGCGTCAACCGCGGCCCCAC
CCCCTTATAAAAGCCGGCCACGCCCTCGTTCTTCAGGATCTGTCCCACGC
AGTCCCAGGTGCTCTTGTACTTGGCCGCCTCCAGGCCTTGCATCCGGCTC
TTCACCACGTCAATGCCCTGGAAAGCGAGCACGGAGATGCCCCCCGCCGT
GGCGCCAGCCGCCGCGCTTTTGATGGGGGTGTCCAGCTTGACATAGTCCT
TGATGACGCTGAAGATGCCGAAGCGCGTGGCCTGCGCGGTGGAGACCTAC
AGGAGCGAGCGAGGTGAGAGAAGGGACGGGGTGGCGGTTATCAGTGTTGT
CTCGGTCATAATTTCGCCTCAAAGGAGAGGGTCCTACCTTCAAGATGGTG
GGGAGGAGGCCGCGGTATACCCCGGAGAGCTTCTCCTCCGCCACGATGGT
CCTCACACCGTGGAAGAATCCCTGGTACTTATTAGTGCCGCGAAACTATG
CGGTGAAGAAAGACGAAAAGGGTCAGGTAAGGCTCCTATTCGGGCGTGGG
CGGGGCGCGAAGGAAAGCCCTTCCTGCGACCTAGACGGACCTGGTCGTGT
ATCAACTTGATCTTAATGGTCTCCTGCGGTGTGGTCACGAAGATTGCCTC
CATGGTTCCCGCGCCAAGCCCCGCCAGGAATCCTTTGGCTTGGCCCAGAC
CGTACTTGTCCCCTCCGTTGGCGTCAGTGAGCAGGCCCGAGAAGAACTCG
AAGGAGCTGAACCGGATTGCTGCCTTGGGTGCCGCGAAGTACAGCATGGA
GGAAAGCCCGCGGTAGAAGCCGAAAAAGCCCCGCTCTGCCATCGTCTCTG
ATATTACTTGTTTTACAGACACAGGTCTGGGGCTCAGCTGCTGCGTCGTC
TTGACATACTCTGTTGGGAACGTACTGCCCAGCGCAACGCAGAATGAGGA
TGGCGGTGAGGCACGTGATGCGCGAAAACCGGTACAGTAATCCTCACATC
AAGTTGCTGGGTGTAAACGTACCAGCAAATTTCAAAGGCCCCCGAGAGCC
CGCCTGCCAAGACCGCCTTGCCCTTGTGAGTAGGCTTATTCCCGATAGGC
GCCATGATTCGGCAGCGAAATGGTTCTGTAAGCGGATTCATAGTGTACAG
CAACATATTTATGAGTGAAAAATACACGTCAGTAGTACCATTTGCTGGTG
TGGTTATCAAAGTCTTATTCGCAACGGGCGTACGTCGTCACTAATTATAA
CAGAGTAAGGTCTGGGCCAGCGAGTAGGGTTGAGAGGGGAGGTCAGAGCG
ACACAGGGCTGACTACTCGAAAAGATACCATCAAACTCGGACCAGAGAGA
TCTTGCAACCGTATTACCATGCAGACATACTGTCGCGATCAAGACCATCA
AACACGTGAACAACCGGATGGTAGGTTCGACTGGTACGAGTACGTGTGCC
TTGTGCCACCGATCCACAGCCGGAGACGAGCGAGTTTCACGATTAAAGCT
ACTGGCTGTGAAGACTAATGTAAGTCCTCGACTCTACTCCGGCCAAAGTA
CCGACACCTTTAACAATTGTGTAGAAAATTTGCACAGGTATCTGAGGCCA
ACTCAGCTGCGGTATTGAGGAACAAAGGGGAGGACAGGATGCAAAACGAG
AAATCTACGGCTCGTAAACGGTCTTCGATCCGGGTATGAGAAAGGAAAGG
CTCAGCTACGCATGCACTCCTTACGTCCCTTCTCTCTCATGCATCCGCCT
ATTCGACTTCTCTCGCAATGTTCCTTAAATTTAAGGTGCAACTTCGTTTC
TTAAAGCAACGTAGTTTCTTAACTCCTGTCCATTACATTGTCGCGTGCCC
TAATACTGGGGAAGTACTATGTGGTGTTACGACCTTTACCTCAGCTACTA
AACTTAAAATGATTTGAACAAGAAGGGTGAAGATGAATGTCAGAGGCTTT
TCGCATAAATGAAATAGTCTACGTTAAGA back to topCoding sequence (CDS) from alignment at CM002462.1:441524..446152- >rna3929 ID=rna3929|Name=rna3929|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002462.1:441524..446152- (Nannochloropsis gaditana)
ATGACATTCAAGGCAGGGACAGCGTCATCAAAGCAACGCAAAATCAAGAG
GCACTCTGTCTTAATTCTGGGTCTATCTCTGGCTACGCTCTCCACATCGC
AAGCCTTTCTGTCGCCCGCTCGATCTTACTCTCTGCCCCGTGCTTCAGCT
TTAGGTTTCCGAGCACCGCTCGCGCCCGCCACCGAGTCACTACACTTCGT
GACGCCACTCAATGCCGCTGGGGCTCAGGAGATGGAGCAGCTAGTGGTTC
AGCCCATCAGCACCTTTGAAGGAGAAATTGAACTTCCCGGAAGCAAGTCA
ATCAGCAATCGCATTCTCCTCCTCTCCGCCCTGAGCCAGGGCACAACTGT
CGTTGACAATCTGCTGCAGAGCGAGGACATTGAGTACATGATTCAAGCCC
TTCTTGATCTAGGAATCAAGCTAGAAAAGACGGGTGAGAATCAGTGGACG
GTCCAGGGCCGAGGGGCGGCTTTCGACTCCGATAAGCCCCTAGAGCTGTA
CCTCGGGAACGCTGGCACGGCCATGCGGCCCCTGACGGCCGCTTTGTGCG
CGGGCCACGGCGACTTCACCCTGGATGGGACTCCTCGGATGCGTGAGCGC
CCGATCTCGGACCTCGTGGACGGGCTGCAGCAGCTCGGAGTCGACTTGGC
CTGCTCCCCGACGGGGTGCCCGCCCGTGACAATCCGAGCCCGAGGCCTCT
CGGGGGGTATCGTGCGCATCTCCGGCAAGATCTCCAGCCAGTATCTGTCC
GCGCTGCTGATGGCCGCGCCCCTCGCCCGCGGGGACGTGAGGATCGAGAT
AACGGACGAGCTGGTCTCGGCGCCCTACGTGCACATGACGGTCAAGTTGA
TGGCCCGCTTTGGGGTGGAGGTGGACAACGAGGGGGATGGGGTCTTCACG
GTCCGAGGGGGGCAGACGTATCGGTCACCCGGGCAGATTTTCACGGAGGG
AGACGCCTCCTCGGCTTCGTACTTCCTGGCTGGCGCGGCCATCACGGGGG
GCCGGGTCACGGTCCGGGGCTGCGGCTCCGAGAGCGTGCAGGGGGACGTG
TATTTCGCGACCGTCCTGGGCGAGATGGGGGCCACGGTGGAGTGGACGCC
CACCTCGATACAAGTGACGCGGCAGCCGGGCGTGCCCCTCAAAGGCATCG
ACGTGGATTGCGGCGCCATTCCGGATGCGGCCATGACGCTGGCGGTGGTG
GCGCTTTTCGCGGAGGGGCCCACAGCCATCAGGTAG back to top
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