rna3928, rna3928 (mRNA) Nannochloropsis gaditana

Overview
Namerna3928
Unique Namerna3928
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1227
Alignment locationCM002462.1:439523..441525 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g196.8188.mrna
Orig protein idgnl|cribi|Naga_100001g196.8188
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:439523..441525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g196gene3780Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3928rna3928-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26677.1cds3919Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3928 ID=rna3928|Name=rna3928|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp
ATGGCAGACCCACAGCCAGATCAAAGCGGGCTGGACAGGTTTCTGATGGT
GGCTGGGGACGGTGTCGACCCTCATGTGGCTCAGAACTTTCTGGACGCGG
GAAGTGGGAATGTTGAACGAGCTTTAGAGCTGTATCTGGACAGTGGCGGT
CACATGCCGGAACCTGTCGCAGGTAACGCTCCTCGTCCCGCACATGCTCC
TCATCTGCCGAGTTCTCAGCAGCTCCACGACGTCGACGAGGAAGATAACG
ACTTGGATGAAGAGGGTAGGCCGGTGCGGAAGGCGGATCAGGTGAAGAAG
CAGCGGCTGCTGGGGGTGGGCCTGGGAGGCGCAGATCGGAGTGAGGACGG
TGGGGAAGGAGGGTCCGAGGTGGGCTTGCTCTTCCACCCACTAAATCCGT
TCCGACACTTTGGGGCGGAAGCACGGGGGTCGTTTGGACGGGGAGGAGAC
CCCTGGGGCAGGGGGGGAGGAGGGGGCATTAGCAAGCTTTTCCAGCCCCC
CCTTCACATGATCTTTCACGGAAATTTTGCGGATGCCCGCGCCACGGCAA
GGGAAGGCAACAAGTGGCTGTTGGTGAACATCCAGCGTGAGGACATCTTC
GCCTCGCACATGCTGAATCGGGACGTGTGGGCCGACGAGCTGGTGCAGGC
CCTGGTCCGGGAGGGCTTCGTCTTCTGGCAGATGAGTGCCGGCCTCCCCG
AGGCCATGTCATACGTTGCCCGGTACCACCTGGACGCGGTGGAGGGCAAC
AGCAAGGACTGTAGCGGCGGGGACGGACACCTTCCGCATATCGGGGTGCT
CGACCCCCGCACCCAGCGGCTCCTCTGGTCCCACGCCGGCGCCCTGTCCC
CGGCCCAGCTCGCGGAGAAACTCACAGAGGTCACTTCCACGGCCCGGGGT
GACGCGCGTGATGATACGTCTTCCACAGGGACAGAGGCGCGTCCGGCGGT
TCTCCGTGGGGAGCCCCGTAGCCTGTCTGTACAGATACGCGCACGAGGAG
CTGGTGCAGTACGGGTTGGGGGGGGGGTTCGATTTGGAGACGACTTACCC
GCCAAAGACCTCGCTGCGGGAGCCTCTCACGAGCGGAGCGAGTTTGAAGG
CTGCCGGGCTGGAGAATTCCTCCTTGTCCGTTGTGCTACCGTAAAGGTAA
AGGGAAGGGGGAAAGGAAAGGATTGCGGACACTGTACAGCGCGGGGGTCA
CCTAGCGGCGCAACTAGGGCGGCTTGA
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protein sequence of rna3928

>rna3928-protein ID=rna3928-protein|Name=rna3928|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MVAATLDRNIWICASDGDLSGVKEFLDDGGLDVNSADEFGYTCLHAASSY
GHVELIQFLVGRGGDVDVRDPDGDTPLHVCEDVAAAEALVTHGADPQARN
NQGKRPHDVALEEGHVAVAGYLRPLCGLPPLSTEQMQRAMVAVDQASNDV
ENGGDVCAENCTATLADLEAFIASSGREEEGKEADDKESEDAMEETNMAE
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mRNA from alignment at CM002462.1:439523..441525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3928 ID=rna3928|Name=rna3928|organism=Nannochloropsis gaditana|type=mRNA|length=2003bp|location=Sequence derived from alignment at CM002462.1:439523..441525+ (Nannochloropsis gaditana)
cgtcCTCACTCCGATCTGCgcctcccaggcccaccCCCAGCAGCCGCTGC
TTCTTCACCTGATCCGCCTTCCGCACCGGCCTACCCTCTTCATCCAAGTC
GTTatcttcctcgtcgacgTCGTGGAGCTGCTGAGAACTCGGCAGATGAG
GAGCATgtgcgggacgaggagcgtTACCTGCGACAGGTTCCGGCATGTGA
CCGCCACTGTCCAGATACAGCTCTAAAGCTCGTTCAACATTCCCACTTCC
CGCGTCCAGAAAGTTCTGAGCCACATGAGGGTCGACACCGTCCCCAGCCA
CCATCAGAAACCTGTCCAGCCCGCTTTGATCTGGCTGTGGGTCTGCCATA
ACAGGGCGTTTGCTTGGTGCTGCTATGCGCGTTGCCTTGTGAATTCAAGC
CCCCCGAAATGCTTTATGTCAGCTCAGGATGCCTCGCCGCGCTTTGATCT
GTGCTCTTTCTCACTTCTTCCCTTAAAGTCGTCCGGGAAATTTGTGTTTT
TTGAGTGAAGTAATTGCATGATGGCGTGATACGGGACATCATCTCGAGAA
AAGAGTTGTTCCTCCCTAGTCACGGCCAGTCTCGGCGACGCAGCGCActc
tggagggaggccgagagATACTACGAGCGAGGTCACGCGGGGAACGAGGG
ACGAATCTTTGCCAAGCAAGGGTGGCAACCCTGCCATGTATCCTCTTGTG
GAGGACCACTGATGACACAGGGGGTCACAATATAGGATCAATGGATGCAG
GAAGCAGTCAAGCCGATATGCATTCCGGACAAAGCAGGGCGCTGAAGAcc
ctccgacctcccctccctctgatTACGCTCGTCTCATATATTCCACATTA
GTGACGCTACAGACATTCATCATCAGCCATGGTGGCCGCCACGCTCGACC
GCAACATTTGGATCTGCGCGAGTGGTAAGATTCCCCACTTTCTGTCTCAT
GCTCCAGCATGCCCTCGACTCATCCTCGTTCTTGAAATAATCAACAGACG
GGGATTTGAGCGGCGTGAAGGAGTTTCTGGATGACGGGGGCTTGGACGTT
AATTCAGCGGACGAGTTTGGATATACGTGCCTGCATGCCGCATCGTCTTA
TGGGCACGTGGAACTCATTCAGTTTTTGgtggggcgaggcggggatgTAG
ACGTGCGCGACCCAGATGGCGACACCCCCTTACATGTATGTGAAGACGTA
GCTGCAGCAGAGGCCTTGGTCACACACGGTGCAGATCCACAGGCTCGCAA
CAACCAAGGTAAGCGGCCCCATGATGTAGcgctggaagagggacaTGTGG
CGGTGGCCGGCTACCTGCGTCCTTTGTGCGGATTACCTCCCTTAAGTACA
GAGCAGATGCAAAGGGCAATGGTGGCCGTCGATCAAGCGAGCAATGATGT
GGAGAATGGCGGAGATGTATGTGCTGAGAATTGTACGGCAACTTTGGCAG
ACTTGGAGGCATTCATAGCGAGttcggggcgggaggaggagggcaaggaa
gcggACGATAAGGAGTCCGAAGacgcgatggaggagactaACATGGCCGA
ATAACCCGTATCGGCATGTAGCCTGTGTAGATACTAATGTGTAATAGCGT
TTGGACGATGATATATGAACACATTTTGAACCCACACTGCCAAAAAATGA
GCGCGTCATACGACAGCAGAAGACGACCAACATCATCGCAGCATGGGCAT
GAGTTGTTGAAATATCTTGACTTATGTTGTCTGATTTAAAGTTGAGAGTT
GAATCCTGCTTTGAATCGGGGGTGCTTTGGATATAATCCATGAGACACTC
GTGTACCACCACCAGCCCCAGCTGGGGATACCTATAATCACAAGAGCTTT
AACGGCCACTGTGCAAGGCAGCAAATATCCATGTGGGGCTTTATAATATC
ACTCTTAACTGGACTCCCGTGTTTGTATGAGAAATGGGTGACTGCCGCCA
TCACAGTCTCCTTTGAATTCCTTCAACAAAGAAATAGCAAATTTAGGAAC
GTC
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Coding sequence (CDS) from alignment at CM002462.1:439523..441525+

>rna3928 ID=rna3928|Name=rna3928|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002462.1:439523..441525+ (Nannochloropsis gaditana)
ATGGTGGCCGCCACGCTCGACCGCAACATTTGGATCTGCGCGAGTGACGG
GGATTTGAGCGGCGTGAAGGAGTTTCTGGATGACGGGGGCTTGGACGTTA
ATTCAGCGGACGAGTTTGGATATACGTGCCTGCATGCCGCATCGTCTTAT
GGGCACGTGGAACTCATTCAGTTTTTGgtggggcgaggcggggatgTAGA
CGTGCGCGACCCAGATGGCGACACCCCCTTACATGTATGTGAAGACGTAG
CTGCAGCAGAGGCCTTGGTCACACACGGTGCAGATCCACAGGCTCGCAAC
AACCAAGGTAAGCGGCCCCATGATGTAGcgctggaagagggacaTGTGGC
GGTGGCCGGCTACCTGCGTCCTTTGTGCGGATTACCTCCCTTAAGTACAG
AGCAGATGCAAAGGGCAATGGTGGCCGTCGATCAAGCGAGCAATGATGTG
GAGAATGGCGGAGATGTATGTGCTGAGAATTGTACGGCAACTTTGGCAGA
CTTGGAGGCATTCATAGCGAGttcggggcgggaggaggagggcaaggaag
cggACGATAAGGAGTCCGAAGacgcgatggaggagactaACATGGCCGAA
TAAATGGTGGCCGCCACGCTCGACCGCAACATTTGGATCTGCGCGAGTGA
CGGGGATTTGAGCGGCGTGAAGGAGTTTCTGGATGACGGGGGCTTGGACG
TTAATTCAGCGGACGAGTTTGGATATACGTGCCTGCATGCCGCATCGTCT
TATGGGCACGTGGAACTCATTCAGTTTTTGgtggggcgaggcggggatgT
AGACGTGCGCGACCCAGATGGCGACACCCCCTTACATGTATGTGAAGACG
TAGCTGCAGCAGAGGCCTTGGTCACACACGGTGCAGATCCACAGGCTCGC
AACAACCAAGGTAAGCGGCCCCATGATGTAGcgctggaagagggacaTGT
GGCGGTGGCCGGCTACCTGCGTCCTTTGTGCGGATTACCTCCCTTAAGTA
CAGAGCAGATGCAAAGGGCAATGGTGGCCGTCGATCAAGCGAGCAATGAT
GTGGAGAATGGCGGAGATGTATGTGCTGAGAATTGTACGGCAACTTTGGC
AGACTTGGAGGCATTCATAGCGAGttcggggcgggaggaggagggcaagg
aagcggACGATAAGGAGTCCGAAGacgcgatggaggagactaACATGGCC
GAATAA
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Synonyms
Publications