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Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide repeat protein 1 |
| Orig transcript id | gnl|cribi|Naga_100018g1.2809.mrna |
| Orig protein id | gnl|cribi|Naga_100018g1.2809 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:374611..375481 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3901 ID=rna3901|Name=rna3901|organism=Nannochloropsis gaditana|type=mRNA|length=2426bp
AGATCGATCGGGCCTTTTTACTATGTTGCGTACGCAGCATGTTGATTCAT
TCTGAAAATATCCCACGACGACAGCAACTGCGCCCGTGAAAGCCACTGAA
CTGCCAGACAAAGGTCTTTACAAGACGGGTGTCCAGGCATAGCTAATTTT
TCGTCCTTCTTTCGATGGAAGGATCGACATCCGGCATGCGCACTTGTGCG
GTCATCGCCATCTTCATCTTTTGTGCATTAGGTGGATTACTCTTCGGCTG
GGACATAGGTGCGACAGCCTATGTCTTGACACAGCTTCAGTCAGACAAAG
CAGGCGTCGCGTGGGGCGAGCGGATCGAAAGCTCCTCTGTCCTGCGAGGG
TTTTTCACGGCCTCTGCGGTAGGAGGTGCTTTACTGGGGACTGTGGTGGT
GCTGCAGGTAGAGGGCTCGATGGGTCGGCGCCGCGAACTGCTGCTTGCGG
CGCTCCTCTACATGATGGGAGGAGGCTTCGAATTCGCCTCAAGTTTTTTG
TCGAGCGATGCCGGGCTGGTGGTATGCCTACTGGGACGATGGATATATGG
TGGAGGGATCGCCTTTGCAATGCACGCAGCCCCTGCCTATCTGGCGGAGA
TGAGCCCCCCGGGGATCCGAGGCTTCATGGTGGCGCTAAAGGAGGGCATG
ATTGTGCTCGGCATCCTGCTCTCCCAGGTGGCGGGTTTTATCTTCAAAGA
CATGGAGGGGGGATGGCGCTGGCCCTTTTTCATGTCCGTCCCCTTGGGTG
CGGCGATGGGGCTGGGCATGTCCCGACTGCCCTCGTCGGCGAGGTGGTTG
GCGCTTCAGGGAAGACTGGAGGAGGCGGAAGACAGCTTGCGATTTTTTAT
GAAGGGGGGTGTCGGTCTGGCAATGGAGGAGATCAAGGCAAGCATGCAGG
ACGAGGAGGAGTGGACGGAGGCGGACGCGGCGGGCGGCGACGGGATGGAT
GGGGATGCCGGGGTCCTTGGGGATGGGAGGGGCATGCGGGGCAGTGGCGG
GGACAAGAGCGAGGGCGCGAAGAGCACACACCACAGCCTTGTCCTTGACG
GCGGGGAGGGCATGAAAGACGCGTGGAAAGGGAAGAAGAGGAAGAAGACG
ACGATCCTACAAGTGCTTCGAAACAGCCGCTATCGCCGACCGTTGATAGT
CGGGCTCGGCGTGGTCACCTTCCAACAGGTCAGCGGGCAGCCCTCCGTCT
TGTACTTCAGCAACGAGATTCTGCGAGATTTCGGCCTGGCCGACTCGGCC
ACCCTCTTGGTGGGCGTCTTCAAGCTGGTCGCCACCATGGGGGCCGTACT
CACCGTTGACCGACGCGGGCGCCGCACGCTGCTCCTGCTGGGGATCGGGG
TCATGGTCCTTGCCCTCGCCCTTCTGTCGGCCATGTTCGCCGTGGAGAAG
GAACCGGGCGCCAAAGGGCAGGCTCTGGACGGCGTGCTGATTGCAGCCAT
GTTCCTGTATATCGCCGGCTATCAGGTGGGCTTCGGGCCCGTGAGCTGGA
TCTTGGTCTCGGAGATATACCCCACCGAGGTGCGAGGAGAGACCGTGGGT
CTGGCGGTGATGGCAAACTTTGGCTCCAATTTGCTGGTGACCTTCGCCTT
CGACCCGGTGCGGGAGTCGATCGGGACCAGCGCGACCTTCGGCTTGTTCC
TGGGGGTGGCGATGGCGGCCTGGTTGTTTGTGTACATGCTCTTACCGGAG
ACCAAGGGGCTGGCCTTGGAGATGATCGGAGCCCAGTTTCAGTCCTTTGC
CTCCACCAGTCGATGGGGCAGTGGCATGGTCGGGACCGAGGGGCTCTTGT
CCTGGTTTCACCGCCATGTCCTCCAGGGGCCTAACACCCAGCACGGAGGA
CAGCAGCAACTCGCACAGCCGCAGAATACGCCAGCGAGGCCCGCCAAGAC
CCTGGGGACAAGAAGTAGCGTCACTCAAACCTTCATCGAACAGCTCCTGC
CCGTGGAGAAGCAGCAAGACGGAGTCGCGTCCATCGGCCTCTCGGACGCC
AGCGGGACGACGGCGACATCGGCCAAGCACCATCTACTGGCACCGCCTCC
GCTTGCCAGGTACGGAGTGGGCAGGATGGAAGAGAAGGCTACAACCGCTC
CGATGGGAGAAGAAAGCAAGGTCGAATCAGTCGATCTAGGTGAAGGAGAG
GTTTAACGTATGACCTGTATGAGGCTCTTTCCCGCCTCATCGTGGGTTTT
TTGTTCGATCCATGGAAGAAAAAGCATCCGTACTGAGGAGTTCCGGGAAT
GATTTGAACCGTCGAATATATCTATCCGTTATGTGTGAGTTGAAATCTTG
ATGTAAAGAGGAATCCTGTACAGAGATGTGCAGTCAGCAATATCGCCTTG
GGCTGGGAACAAAAAAGGTCAAAAGGCTGTGATTTTTGCCTTTGAAAGCA
ATATACCAGTCTTTAGCCCAAGCGGA back to topprotein sequence of rna3901 >rna3901-protein ID=rna3901-protein|Name=rna3901|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MTSPNAAAIHLREEGLAKSGRRDYRGAIAAYDEAIQLYRDLPRLNASCRE
DLVLCWMKRAEAYFRLKEYEACIEDCTRVLAVHPGLVEARLRQEYARQSL
ELQKGRSEEAVHSHRNGLNGRRKPEKKGMKKGEPWVAPSEASQASSPPSP
TRVPRPPLPLPPHPGGTEREGPTAWKKR back to topmRNA from alignment at CM002462.1:374611..375481+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3901 ID=rna3901|Name=rna3901|organism=Nannochloropsis gaditana|type=mRNA|length=871bp|location=Sequence derived from alignment at CM002462.1:374611..375481+ (Nannochloropsis gaditana)
TTTGATAGGAAAGGGCGATTgggaccaccaccaccatgaCTTGACGTTGT
TGCAGAACGTTAAAAAATAAACGCGAGACGCACCTACGGAAATGACGTCC
CCTAATGCTGCAGCAATACATTTGAGGGAAGAAGGCCTTGCAAAATCTGG
GCGGCGGGACTACAGGGGTGCCATCGCTGCCTACGATGAGGCTATCCAAC
TTTATAGAGACTTACCACGCCTTAACGCATCCTGTCGCGAGGACCTGGTG
CTGTGCTGGATGAAGCGTGCCGAGGCATATTTCCGTCTCAAGGAATATGA
AGCATGCATAGAGGACTGCACCCGCGTCCTGGCCGTCCATCCAGGCCTCG
TGGAAGCTCGTCTGCGACAGGAATACGCCCGGCAAAGCTTGGAATTGCAG
AAGGGAcgctcggaggaggcggtgcatTCCCACAGGAACGGCCTGAACGG
GCGTAGGAAGCCCGAGAAGAAGGGCATGAAAAAAGGAGAGCCGTGGGTGG
CACCGAGCGAAGCCTCTCAGGCCTCGagccccccttctcccacgcgcgtc
ccccgccctcccctccccctccctccccaccccggaGGCACCGAAAGGGA
AGGACCCACGgcctggaagaagaggtaaCGAACGGACAGAGCGCTTCTCG
CATATCCTTGGGGGGTTCCGGAGAAGCTGCATGGGCAGactcatccccct
ccgcccccatcaACCCGCCCGCCGGAACCGCCGACGGCAACCAGAACGGC
TTGGGAGCCCTCCCGCGAGGGGGTtcagcaccctcccccgcggaGCAGGC
CCTGATCGTGCGACGGCTGCTGATGCAGACCGGAAGGCTGGGCTCGGAGC
CTGGGGACGTGTGGGCGGTGC back to topCoding sequence (CDS) from alignment at CM002462.1:374611..375481+ >rna3901 ID=rna3901|Name=rna3901|organism=Nannochloropsis gaditana|type=CDS|length=537bp|location=Sequence derived from alignment at CM002462.1:374611..375481+ (Nannochloropsis gaditana)
ATGACGTCCCCTAATGCTGCAGCAATACATTTGAGGGAAGAAGGCCTTGC
AAAATCTGGGCGGCGGGACTACAGGGGTGCCATCGCTGCCTACGATGAGG
CTATCCAACTTTATAGAGACTTACCACGCCTTAACGCATCCTGTCGCGAG
GACCTGGTGCTGTGCTGGATGAAGCGTGCCGAGGCATATTTCCGTCTCAA
GGAATATGAAGCATGCATAGAGGACTGCACCCGCGTCCTGGCCGTCCATC
CAGGCCTCGTGGAAGCTCGTCTGCGACAGGAATACGCCCGGCAAAGCTTG
GAATTGCAGAAGGGAcgctcggaggaggcggtgcatTCCCACAGGAACGG
CCTGAACGGGCGTAGGAAGCCCGAGAAGAAGGGCATGAAAAAAGGAGAGC
CGTGGGTGGCACCGAGCGAAGCCTCTCAGGCCTCGagccccccttctccc
acgcgcgtcccccgccctcccctccccctccctccccaccccggaGGCAC
CGAAAGGGAAGGACCCACGgcctggaagaagaggtaa back to top
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