EWM26829.1, cds3892 (CDS) Nannochloropsis gaditana

Overview
NameEWM26829.1
Unique Namecds3892
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:374702..375238 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26829.1
Producttetratricopeptide repeat protein 1
Orig transcript idgnl|cribi|Naga_100018g1.2809.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:374702..375238 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
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BLAST of EWM26829.1 vs. NCBI_GenBank
Match: gi|585108920|gb|EWM26829.1| (tetratricopeptide repeat protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 361.303 bits (926), Expect = 2.205e-126
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0 
Query:    1 MTSPNAAAIHLREEGLAKSGRRDYRGAIAAYDEAIQLYRDLPRLNASCREDLVLCWMKRAEAYFRLKEYEACIEDCTRVLAVHPGLVEARLRQEYARQSLELQKGRSEEAVHSHRNGLNGRRKPEKKGMKKGEPWVAPSEASQASSPPSPTRVPRPPLPLPPHPGGTEREGPTAWKKR 178
            MTSPNAAAIHLREEGLAKSGRRDYRGAIAAYDEAIQLYRDLPRLNASCREDLVLCWMKRAEAYFRLKEYEACIEDCTRVLAVHPGLVEARLRQEYARQSLELQKGRSEEAVHSHRNGLNGRRKPEKKGMKKGEPWVAPSEASQASSPPSPTRVPRPPLPLPPHPGGTEREGPTAWKKR
Sbjct:    1 MTSPNAAAIHLREEGLAKSGRRDYRGAIAAYDEAIQLYRDLPRLNASCREDLVLCWMKRAEAYFRLKEYEACIEDCTRVLAVHPGLVEARLRQEYARQSLELQKGRSEEAVHSHRNGLNGRRKPEKKGMKKGEPWVAPSEASQASSPPSPTRVPRPPLPLPPHPGGTEREGPTAWKKR 178
The following BLAST results are available for this feature:
BLAST of EWM26829.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108920|gb|EWM26829.1|2.205e-126100.00tetratricopeptide repeat protein 1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3901rna3901Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications