rna39, rna39 (mRNA) Nannochloropsis gaditana

Overview
Namerna39
Unique Namerna39
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1058
Alignment locationCM002455.1:111825..113243 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101554g1.2587.mrna
Orig protein idgnl|cribi|Naga_101554g1.2587
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:111825..113243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101554g1gene37Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna39rna39-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30634.1cds39Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna39 ID=rna39|Name=rna39|organism=Nannochloropsis gaditana|type=mRNA|length=1058bp
TGCAGGCTGGTGGTTGAAGACAGGGTCGAGGGCGGGGAGGGGGAAGGCGA
AGGGCCGTGACATCCTTGCAGTTGCTGGAGTCTCGGGCCAGCCGCACAAG
CCCCTCCCTCTTGTCTCCCAGCCTTCCCGACGCTGCCTTGCTCACCCTCC
CCTGCTGCCACATGCCCTCCCTCGTCGTGACCGCAACCCCCCTTTGCCCT
TTCGCCCCCTCTCCTCAGCTCCATCCTCTTCGATGACCTCTGGATCCGTC
CCTACGGGCGCTGGCTCTACCCCGTCCACTCCTTCTTCCCCGAGGTCACC
GACTTGACCAAGCAGGTGGTCACCTACGGCCCGCACGTGGACGCCCGGTG
GAACCAAATGGCGGCCTTCTTCCGAAGGCAAATCCTGGGGGCGGGGTCCG
CCAACGCCCATCGAGACACCCAGCAGCTCTTGCAGCCCTCCACGCAGCCG
TACATACTCTTGGTGGACAGAGCAGCCTCACGTCTCTTGAAGGACAACAG
CACACGCACCTTCGAAGAGATCACGCGCGTGTTGCGGGAAGAAGGGGGGC
TGACCAATCTGGAGGCGGTCAGGATGGAGGATATACCAGAGGAGGGTCAG
TTTGAGAAGGTCATGCGGGCAAGCATCCTCATCGGAGTGCACGGGGCAGC
CTTGACCAACATGGTTTGGCAGCCACCCGTCGACTCCACCGTCATTGAAA
TAGGTTTTCAACCAAGAAAGCCGGATTATCCAAACATGGCACGAGTTGTG
GGTCGTGCTTACAGATATTTGGCAGCGGAAGGCGTGGAAGAAAAAATAGA
TCTTAATCCCATAGCCTGGAAACGAGTCTATGTTGACTCAAGGAAACTGC
TTGCGGTCGTTCAGGACGTTCTGGTGGAGCGGACGGAGCGCAAAGAGTGG
TTGTGTTGTTGATTACGGTAAACAATAGAAATCTCTTGATGATTAAAAGA
AAAAAAGAACGAAGTAAAGCTGAAGGAGTTACACGCACGGATTGAAACAA
GAAAATCCAATGGTATGCCATGGTCGGTGCCTGTACACGGGAGGTTGTGA
AATTCAAA
back to top

protein sequence of rna39

>rna39-protein ID=rna39-protein|Name=rna39|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MGTEASSWQAQKCASCGQQPAWLGTPSSAQAVPPYLSPQPLLSPSFLDRS
KAGTGDKGDHGLLTFPFVWRRQQQREVRPSFYHHFVGLGLACGGDILPPP
VSPPPISASLRRCLSASFSTTSPCFFVVLFFSVVAVFLWGPWTYLPSTLH
PLGQALSSLTGGCHPEDFERLGRAVWVADPAFARKLGFCSEPLSNKCITS
RRTSPCASFRTVATTSWSR
back to top

mRNA from alignment at CM002455.1:111825..113243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna39 ID=rna39|Name=rna39|organism=Nannochloropsis gaditana|type=mRNA|length=1419bp|location=Sequence derived from alignment at CM002455.1:111825..113243- (Nannochloropsis gaditana)
ATGGGCACCGAAGTAATCGTGTGGACGACTCGAGCAAAGAGCGGCAACAA
GCCTGCCGGGGCTTTCCTCTTCCTCCTTCGCTTTTCTTAAATCTCCATTT
TTACGATAACTCGCGTCCACTCACCCTTTCCTTTAGGCGTCGAGCTGGCA
GGCACAAAAGTGTGCGAGCTGCGGTCAACAGCCAGCGTGGTTGGGCACCC
CATCGTCCGCACAAGCCGTTCCTCCCTATTTATCCCCTCAGCCCCTGCTT
TCTCCTTCCTTCCTTGACCGGTCCAAGGCGGGCACTGGAGATAAAGGCGA
CCATGGCCTCCTTACCTTTCCGTTTGTCTGGCGGAGGCAACAACAACGCG
AGGTACGCCCCTCTTTCTACCACCACTTTGTCGGACTCGGCCTCGCATGC
GGGGGGGACATACTCCCCCCCCCGGTCTCGCCCCCCCCCATTTCCGCTTC
CCTCCGCCGTTGCCTCTCTGCCTCTTTCTCCACTACTTCGCCCTGCTTTT
TCGTCGTCCTTTTCTTCTCCGTCGTGGCCGTTTTTCTCTGGGGTCCGTGG
ACCTACCTGCCGTCCACCCTCCATCCCCTCGGTCAGGCACTTTCCTCCCT
CACAGGGGGGTGCCATCCGGTAAGGCGTGGAGGGCCCCGGATGCTTACAA
ACGGGCGTGAGATTTGAGCGTTCAGGGACTGAACCCGGGAAGCGTGTGGT
GGGGTCGACGCGAGGAAGGGAAAGGCATTATCGGGTGTTGACCCTCTCTG
TTCATCATCGGGTGTTGACCCTCTCTACTTTTTTTCTTCTTCCTCCCATT
GCTGGCGGACAGGAGGATTTTGAAAGGCTGGGTCGCGCGGTGTGGGTGGC
AGATCCTGCCTTTGCTCGCAAATTAGGGTACGGGGGAGGGAAGGAGGGAG
GGAGGGAAGGAGGGAAGGAGGGAGGTCTCGGAACAAGATGAGGGGACAAA
TGCCGATCGGTCATGATTGCTCAATACCAAAGCCTTTCTCTCTGCCCACT
CCTTCCTAGCTGTGATCCCAATGCCTGTCACTGCCTGTTCGTTGAAAGCG
GGGCAGGGACCGGGGGAGGGGGGGTGCGGCACCTCGCTTCCTCCCTCCCT
CCCCCCCTGCCTGCCTCGCTCACGCCCGCGTCGTTGTGTAGGAGAGAGGG
AGGCTGCGACTCTGCGATGGACGCGATCAGGCTAGAAGCACGGAGAAAGC
CGGCGTCAGGGAGGGAGGAAGGGAAGGAGGGAGGGCGGGAGGGAGGGAGG
GAGGAAGGGCGGGAGGGAGGGCGTAGACGGACGCAGGGAGACGAGGGGGG
AGGAGGTTACATTCGTCAGGTTCTGCTCGGAGCCTCTATCAAACAAGTGC
ATTACTTCCAGGAGGACAAGCCCTTGTGCCTCGTTCCGCACCGTCGCTAC
GACGAGCTGGTCCAGGTAG
back to top

Coding sequence (CDS) from alignment at CM002455.1:111825..113243-

>rna39 ID=rna39|Name=rna39|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002455.1:111825..113243- (Nannochloropsis gaditana)
GTTCTGCTCGGAGCCTCTATCAAACAAGTGCATTACTTCCAGGAGGACAA
GCCCTTGTGCCTCGTTCCGCACCGTCGCTACGACGAGCTGGTCCAGGTAG
GAGGATTTTGAAAGGCTGGGTCGCGCGGTGTGGGTGGCAGATCCTGCCTT
TGCTCGCAAATTAGGGCGTCGAGCTGGCAGGCACAAAAGTGTGCGAGCTG
CGGTCAACAGCCAGCGTGGTTGGGCACCCCATCGTCCGCACAAGCCGTTC
CTCCCTATTTATCCCCTCAGCCCCTGCTTTCTCCTTCCTTCCTTGACCGG
TCCAAGGCGGGCACTGGAGATAAAGGCGACCATGGCCTCCTTACCTTTCC
GTTTGTCTGGCGGAGGCAACAACAACGCGAGGTACGCCCCTCTTTCTACC
ACCACTTTGTCGGACTCGGCCTCGCATGCGGGGGGGACATACTCCCCCCC
CCGGTCTCGCCCCCCCCCATTTCCGCTTCCCTCCGCCGTTGCCTCTCTGC
CTCTTTCTCCACTACTTCGCCCTGCTTTTTCGTCGTCCTTTTCTTCTCCG
TCGTGGCCGTTTTTCTCTGGGGTCCGTGGACCTACCTGCCGTCCACCCTC
CATCCCCTCGGTCAGGCACTTTCCTCCCTCACAGGGGGGTGCCATCCGAT
GGGCACCGAAGTTCTGCTCGGAGCCTCTATCAAACAAGTGCATTACTTCC
AGGAGGACAAGCCCTTGTGCCTCGTTCCGCACCGTCGCTACGACGAGCTG
GTCCAGGTAGGAGGATTTTGAAAGGCTGGGTCGCGCGGTGTGGGTGGCAG
ATCCTGCCTTTGCTCGCAAATTAGGGCGTCGAGCTGGCAGGCACAAAAGT
GTGCGAGCTGCGGTCAACAGCCAGCGTGGTTGGGCACCCCATCGTCCGCA
CAAGCCGTTCCTCCCTATTTATCCCCTCAGCCCCTGCTTTCTCCTTCCTT
CCTTGACCGGTCCAAGGCGGGCACTGGAGATAAAGGCGACCATGGCCTCC
TTACCTTTCCGTTTGTCTGGCGGAGGCAACAACAACGCGAGGTACGCCCC
TCTTTCTACCACCACTTTGTCGGACTCGGCCTCGCATGCGGGGGGGACAT
ACTCCCCCCCCCGGTCTCGCCCCCCCCCATTTCCGCTTCCCTCCGCCGTT
GCCTCTCTGCCTCTTTCTCCACTACTTCGCCCTGCTTTTTCGTCGTCCTT
TTCTTCTCCGTCGTGGCCGTTTTTCTCTGGGGTCCGTGGACCTACCTGCC
GTCCACCCTCCATCCCCTCGGTCAGGCACTTTCCTCCCTCACAGGGGGGT
GCCATCCGATGGGCACCGAAGTTCTGCTCGGAGCCTCTATCAAACAAGTG
CATTACTTCCAGGAGGACAAGCCCTTGTGCCTCGTTCCGCACCGTCGCTA
CGACGAGCTGGTCCAGGTAGGAGGATTTTGAAAGGCTGGGTCGCGCGGTG
TGGGTGGCAGATCCTGCCTTTGCTCGCAAATTAGGGCGTCGAGCTGGCAG
GCACAAAAGTGTGCGAGCTGCGGTCAACAGCCAGCGTGGTTGGGCACCCC
ATCGTCCGCACAAGCCGTTCCTCCCTATTTATCCCCTCAGCCCCTGCTTT
CTCCTTCCTTCCTTGACCGGTCCAAGGCGGGCACTGGAGATAAAGGCGAC
CATGGCCTCCTTACCTTTCCGTTTGTCTGGCGGAGGCAACAACAACGCGA
GGTACGCCCCTCTTTCTACCACCACTTTGTCGGACTCGGCCTCGCATGCG
GGGGGGACATACTCCCCCCCCCGGTCTCGCCCCCCCCCATTTCCGCTTCC
CTCCGCCGTTGCCTCTCTGCCTCTTTCTCCACTACTTCGCCCTGCTTTTT
CGTCGTCCTTTTCTTCTCCGTCGTGGCCGTTTTTCTCTGGGGTCCGTGGA
CCTACCTGCCGTCCACCCTCCATCCCCTCGGTCAGGCACTTTCCTCCCTC
ACAGGGGGGTGCCATCCGATGGGCACCGAAGTTCTGCTCGGAGCCTCTAT
CAAACAAGTGCATTACTTCCAGGAGGACAAGCCCTTGTGCCTCGTTCCGC
ACCGTCGCTACGACGAGCTGGTCCAGGTAGGAGGATTTTGAAAGGCTGGG
TCGCGCGGTGTGGGTGGCAGATCCTGCCTTTGCTCGCAAATTAGGGCGTC
GAGCTGGCAGGCACAAAAGTGTGCGAGCTGCGGTCAACAGCCAGCGTGGT
TGGGCACCCCATCGTCCGCACAAGCCGTTCCTCCCTATTTATCCCCTCAG
CCCCTGCTTTCTCCTTCCTTCCTTGACCGGTCCAAGGCGGGCACTGGAGA
TAAAGGCGACCATGGCCTCCTTACCTTTCCGTTTGTCTGGCGGAGGCAAC
AACAACGCGAGGTACGCCCCTCTTTCTACCACCACTTTGTCGGACTCGGC
CTCGCATGCGGGGGGGACATACTCCCCCCCCCGGTCTCGCCCCCCCCCAT
TTCCGCTTCCCTCCGCCGTTGCCTCTCTGCCTCTTTCTCCACTACTTCGC
CCTGCTTTTTCGTCGTCCTTTTCTTCTCCGTCGTGGCCGTTTTTCTCTGG
GGTCCGTGGACCTACCTGCCGTCCACCCTCCATCCCCTCGGTCAGGCACT
TTCCTCCCTCACAGGGGGGTGCCATCCGATGGGCACCGAA
back to top
Synonyms
Publications