EWM30634.1, cds39 (CDS) Nannochloropsis gaditana

Overview
NameEWM30634.1
Unique Namecds39
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:113232..113243 -
Alignment locationCM002455.1:112625..113107 -
Alignment locationCM002455.1:112367..112431 -
Alignment locationCM002455.1:111825..111924 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30634.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101554g1.2587.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:113232..113243 -
CM002455.1supercontigCM002455.1:112625..113107 -
CM002455.1supercontigCM002455.1:112367..112431 -
CM002455.1supercontigCM002455.1:111825..111924 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM30634.1 vs. NCBI_GenBank
Match: gi|585113318|gb|EWM30634.1| (hypothetical protein Naga_101554g1 [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 9.872e-156
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 
Query:    1 MGTEASSWQAQKCASCGQQPAWLGTPSSAQAVPPYLSPQPLLSPSFLDRSKAGTGDKGDHGLLTFPFVWRRQQQREVRPSFYHHFVGLGLACGGDILPPPVSPPPISASLRRCLSASFSTTSPCFFVVLFFSVVAVFLWGPWTYLPSTLHPLGQALSSLTGGCHPEDFERLGRAVWVADPAFARKLGFCSEPLSNKCITSRRTSPCASFRTVATTSWSR 219
            MGTEASSWQAQKCASCGQQPAWLGTPSSAQAVPPYLSPQPLLSPSFLDRSKAGTGDKGDHGLLTFPFVWRRQQQREVRPSFYHHFVGLGLACGGDILPPPVSPPPISASLRRCLSASFSTTSPCFFVVLFFSVVAVFLWGPWTYLPSTLHPLGQALSSLTGGCHPEDFERLGRAVWVADPAFARKLGFCSEPLSNKCITSRRTSPCASFRTVATTSWSR
Sbjct:    1 MGTEASSWQAQKCASCGQQPAWLGTPSSAQAVPPYLSPQPLLSPSFLDRSKAGTGDKGDHGLLTFPFVWRRQQQREVRPSFYHHFVGLGLACGGDILPPPVSPPPISASLRRCLSASFSTTSPCFFVVLFFSVVAVFLWGPWTYLPSTLHPLGQALSSLTGGCHPEDFERLGRAVWVADPAFARKLGFCSEPLSNKCITSRRTSPCASFRTVATTSWSR 219
The following BLAST results are available for this feature:
BLAST of EWM30634.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585113318|gb|EWM30634.1|9.872e-156100.00hypothetical protein Naga_101554g1 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna39rna39Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications