rna3892, rna3892 (mRNA) Nannochloropsis gaditana

Overview
Namerna3892
Unique Namerna3892
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length546
Alignment locationCM002462.1:337849..338882 -

Link to JBrowse

Properties
Property NameValue
ProductUDP-N-acetylglucosamine transferase
Orig transcript idgnl|cribi|Naga_100018g10.2766.mrna
Orig protein idgnl|cribi|Naga_100018g10.2766
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:337849..338882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g10gene3744Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3892rna3892-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26786.1cds3883Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3892 ID=rna3892|Name=rna3892|organism=Nannochloropsis gaditana|type=mRNA|length=546bp
ATGGGGTTGACATTCTCCCGGATTTGGGAGCGCATGTTCGGCAAGAAGGA
AATGCGTATTTTGATGGTAGGCCTTGACGCAGCAGGGAAGACAACGATCC
TTTACAAGCTGAAGCTGGGAGAGGTGGTCACCACAATCCCGACGATTGGG
TTCAACGTTGAAACTGTGGAGTACAAGAACATCTCTTTTACTGTCTGGGA
CGTGGGGGGACAGGACAAGATCCGTCCCCTCTGGCGACACTACTACCAAA
ACACCCAGGGTTTGATCTTCGTCGTGGACTCGAATGACAGGGACCGTGTC
GATGCTGCCCGCGACGAATTGCACCGGATGCTGAACGAAGACGAGCTTCG
AGACTCGATCTTGCTTGTCTTTGCCAACAAACAGGACTTGCCGCAGGCCA
TGAATGCGGCCGAAATGACCGACAAACTGGGCCTGTCATCTCTCCGTCAT
CGGCAGTGGTACATTCAGGCTTGCTGCGCCACAAGTGGCGATGGGCTCTA
CGAAGGCTTGGACTGGTTGTCGGCCGCGTTGCAAAAGCGCAAATAG
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protein sequence of rna3892

>rna3892-protein ID=rna3892-protein|Name=rna3892|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MGTSTARKLVFVTVGTTRFDALIEAISTPDALECLAVQGFTDLLIQIGAS
PEPTVGTAAGSDYVREVHDNKDTETKKGVLESRLTSLLRRRVAKRSTSGQ
IRGNEAVSVSWYRYKDSLRADMEAADLIISHAGAGSVMEGLNLGKALLVV
VNTALMDDHQQELAHAMQKKGYLVATEPNGVVGMLQNYDQWQRSLILRPS
PTPGLIPALLDQEMGFSSPDPVGTRGRYHEK
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mRNA from alignment at CM002462.1:337849..338882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3892 ID=rna3892|Name=rna3892|organism=Nannochloropsis gaditana|type=mRNA|length=1034bp|location=Sequence derived from alignment at CM002462.1:337849..338882- (Nannochloropsis gaditana)
ATGGGTACATCGACGGCACGGAAGCTTGTGTTCGTCACTGTCGGAACCAC
GCGTTTTGACGCGCTTATTGAGGTAGGATACGCGGTCAGGCCTTCTCCGC
CCTTGACCTCCTCCCTCGTCTCATTATTTACGAACCTTGCGCCCTCCAGG
CAATATCAACACCAGATGCCTTGGAATGTCTGGCCGTGCAGGGTTTTACC
GACTTACTGATCCAAATCGGGGCTAGTCCTGAGCCAACGGTAGGCACAGC
GGCAGGTTCAGACTATGTGCGGGAAGTACATGACAACAAGGACACAGAGA
CGAAGAAGGGGGTCCTAGAAAGTCGGTTGACTTCTCTCCTGCGAAGACGT
GTCGCAAAGAGGAGCACATCAGGTCAAATACGGGGTAATGAAGCTGTCTC
TGTGTCTTGGTACCGCTACAAGGACAGCTTGCGGGCGGATATGGAGGCGG
CGGACTTGATAATTAGCCATGCCGGTACGAACTAAAGCATAGGTCCACGT
GTGCGAGCGTGTGAGAACGGTTCTCGTCAACTAATACAACCGCTACCGAA
AAATAAATTGGCTTGAACAATGCACTGGTTCTCACCGCCCCAGCTTACAC
ACAAGCAGGCGCTGGCTCCGTGATGGAGGGGTTGAACCTAGGAAAGGCTT
TGCTTGTGGTGGTGAACACTGCTCTCATGGATGACCATCAGCAGGAACTG
GCCCATGCGATGCAAAAGAAGGTAGCGGGAGGTCAAATATGCATGCGTGC
GGTCTTGAGGTGGGAGGACAAGGAAAGTACTGAAAACAGGAATATAGCAC
CATCACAATATCTCAAGAAAAGCTTTGTATCTATACTTGCCCAAACAGGG
TTATTTGGTTGCGACGGAGCCAAATGGCGTGGTAGGCATGTTACAAAACT
ATGATCAGTGGCAACGCTCCCTAATTCTAAGGCCCTCTCCGACCCCAGGG
TTGATCCCAGCACTCCTAGATCAAGAAATGGGCTTTTCCTCCCCCGATCC
AGTTGGAACAAGAGGGCGTTATCATGAGAAATGA
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Coding sequence (CDS) from alignment at CM002462.1:337849..338882-

>rna3892 ID=rna3892|Name=rna3892|organism=Nannochloropsis gaditana|type=CDS|length=2784bp|location=Sequence derived from alignment at CM002462.1:337849..338882- (Nannochloropsis gaditana)
GGTTATTTGGTTGCGACGGAGCCAAATGGCGTGGTAGGCATGTTACAAAA
CTATGATCAGTGGCAACGCTCCCTAATTCTAAGGCCCTCTCCGACCCCAG
GGTTGATCCCAGCACTCCTAGATCAAGAAATGGGCTTTTCCTCCCCCGAT
CCAGTTGGAACAAGAGGGCGTTATCATGAGAAATGAGCGCTGGCTCCGTG
ATGGAGGGGTTGAACCTAGGAAAGGCTTTGCTTGTGGTGGTGAACACTGC
TCTCATGGATGACCATCAGCAGGAACTGGCCCATGCGATGCAAAAGAAGG
CAATATCAACACCAGATGCCTTGGAATGTCTGGCCGTGCAGGGTTTTACC
GACTTACTGATCCAAATCGGGGCTAGTCCTGAGCCAACGGTAGGCACAGC
GGCAGGTTCAGACTATGTGCGGGAAGTACATGACAACAAGGACACAGAGA
CGAAGAAGGGGGTCCTAGAAAGTCGGTTGACTTCTCTCCTGCGAAGACGT
GTCGCAAAGAGGAGCACATCAGGTCAAATACGGGGTAATGAAGCTGTCTC
TGTGTCTTGGTACCGCTACAAGGACAGCTTGCGGGCGGATATGGAGGCGG
CGGACTTGATAATTAGCCATGCCGATGGGTACATCGACGGCACGGAAGCT
TGTGTTCGTCACTGTCGGAACCACGCGTTTTGACGCGCTTATTGAGGGTT
ATTTGGTTGCGACGGAGCCAAATGGCGTGGTAGGCATGTTACAAAACTAT
GATCAGTGGCAACGCTCCCTAATTCTAAGGCCCTCTCCGACCCCAGGGTT
GATCCCAGCACTCCTAGATCAAGAAATGGGCTTTTCCTCCCCCGATCCAG
TTGGAACAAGAGGGCGTTATCATGAGAAATGAGCGCTGGCTCCGTGATGG
AGGGGTTGAACCTAGGAAAGGCTTTGCTTGTGGTGGTGAACACTGCTCTC
ATGGATGACCATCAGCAGGAACTGGCCCATGCGATGCAAAAGAAGGCAAT
ATCAACACCAGATGCCTTGGAATGTCTGGCCGTGCAGGGTTTTACCGACT
TACTGATCCAAATCGGGGCTAGTCCTGAGCCAACGGTAGGCACAGCGGCA
GGTTCAGACTATGTGCGGGAAGTACATGACAACAAGGACACAGAGACGAA
GAAGGGGGTCCTAGAAAGTCGGTTGACTTCTCTCCTGCGAAGACGTGTCG
CAAAGAGGAGCACATCAGGTCAAATACGGGGTAATGAAGCTGTCTCTGTG
TCTTGGTACCGCTACAAGGACAGCTTGCGGGCGGATATGGAGGCGGCGGA
CTTGATAATTAGCCATGCCGATGGGTACATCGACGGCACGGAAGCTTGTG
TTCGTCACTGTCGGAACCACGCGTTTTGACGCGCTTATTGAGGGTTATTT
GGTTGCGACGGAGCCAAATGGCGTGGTAGGCATGTTACAAAACTATGATC
AGTGGCAACGCTCCCTAATTCTAAGGCCCTCTCCGACCCCAGGGTTGATC
CCAGCACTCCTAGATCAAGAAATGGGCTTTTCCTCCCCCGATCCAGTTGG
AACAAGAGGGCGTTATCATGAGAAATGAGCGCTGGCTCCGTGATGGAGGG
GTTGAACCTAGGAAAGGCTTTGCTTGTGGTGGTGAACACTGCTCTCATGG
ATGACCATCAGCAGGAACTGGCCCATGCGATGCAAAAGAAGGCAATATCA
ACACCAGATGCCTTGGAATGTCTGGCCGTGCAGGGTTTTACCGACTTACT
GATCCAAATCGGGGCTAGTCCTGAGCCAACGGTAGGCACAGCGGCAGGTT
CAGACTATGTGCGGGAAGTACATGACAACAAGGACACAGAGACGAAGAAG
GGGGTCCTAGAAAGTCGGTTGACTTCTCTCCTGCGAAGACGTGTCGCAAA
GAGGAGCACATCAGGTCAAATACGGGGTAATGAAGCTGTCTCTGTGTCTT
GGTACCGCTACAAGGACAGCTTGCGGGCGGATATGGAGGCGGCGGACTTG
ATAATTAGCCATGCCGATGGGTACATCGACGGCACGGAAGCTTGTGTTCG
TCACTGTCGGAACCACGCGTTTTGACGCGCTTATTGAGGGTTATTTGGTT
GCGACGGAGCCAAATGGCGTGGTAGGCATGTTACAAAACTATGATCAGTG
GCAACGCTCCCTAATTCTAAGGCCCTCTCCGACCCCAGGGTTGATCCCAG
CACTCCTAGATCAAGAAATGGGCTTTTCCTCCCCCGATCCAGTTGGAACA
AGAGGGCGTTATCATGAGAAATGAGCGCTGGCTCCGTGATGGAGGGGTTG
AACCTAGGAAAGGCTTTGCTTGTGGTGGTGAACACTGCTCTCATGGATGA
CCATCAGCAGGAACTGGCCCATGCGATGCAAAAGAAGGCAATATCAACAC
CAGATGCCTTGGAATGTCTGGCCGTGCAGGGTTTTACCGACTTACTGATC
CAAATCGGGGCTAGTCCTGAGCCAACGGTAGGCACAGCGGCAGGTTCAGA
CTATGTGCGGGAAGTACATGACAACAAGGACACAGAGACGAAGAAGGGGG
TCCTAGAAAGTCGGTTGACTTCTCTCCTGCGAAGACGTGTCGCAAAGAGG
AGCACATCAGGTCAAATACGGGGTAATGAAGCTGTCTCTGTGTCTTGGTA
CCGCTACAAGGACAGCTTGCGGGCGGATATGGAGGCGGCGGACTTGATAA
TTAGCCATGCCGATGGGTACATCGACGGCACGGAAGCTTGTGTTCGTCAC
TGTCGGAACCACGCGTTTTGACGCGCTTATTGAG
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Synonyms
Publications