rna3891, rna3891 (mRNA) Nannochloropsis gaditana

Overview
Namerna3891
Unique Namerna3891
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length243
Alignment locationCM002462.1:335502..336519 -

Link to JBrowse

Properties
Property NameValue
Productadp-ribosylation factor
Orig transcript idgnl|cribi|Naga_100018g11.2782.mrna
Orig protein idgnl|cribi|Naga_100018g11.2782
GeneArf1
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:335502..336519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Arf1gene3743Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3891rna3891-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26802.1cds3882Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3891 ID=rna3891|Name=rna3891|organism=Nannochloropsis gaditana|type=mRNA|length=243bp
ATGACTAAAGCACGAAGTGGAGCAATGAATAGGTCGTGGTTTGTCGTCTT
AGTCCATTTGTATGGATGGATGGAGTGTTGTTTGAAACTTAGCACCACGA
ACCCTATAATGTACCTTCATCTTCTTGACGCATGTTGTAAGTTACCCCGT
ACAATTCAATTTTTTCCAGCTGGAAAGAAGCAGACTGGAACAGACGGGAT
GATGAGTTGGGTGGAGGATGAGCGGGGAATGATGGTAATGTAG
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protein sequence of rna3891

>rna3891-protein ID=rna3891-protein|Name=rna3891|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRV
DAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRH
RQWYIQACCATSGDGLYEGLDWLSAALQKRK
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mRNA from alignment at CM002462.1:335502..336519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3891 ID=rna3891|Name=rna3891|organism=Nannochloropsis gaditana|type=mRNA|length=1018bp|location=Sequence derived from alignment at CM002462.1:335502..336519- (Nannochloropsis gaditana)
ATGGGGTTGACATTCTCCCGGATTTGGGAGCGCATGTTCGGCAAGAAGGA
AATGCGTATTTTGATGGTAGGCCTTGACGCAGCAGGGAAGACAACGATCC
TTTACAAGCTGAAGCTGGGAGAGGTGGTCACCACAATCCCGACGATTGGG
TACGTAACGTACAAGCTTTGGTTTACATAGAAGGCGATATAGCCTCGATG
CTCCCTTCGCCAGTTTCTTTCATGATTGTTGGCCTGCCAACGTATTCACA
TTTCACCCCTCGCATCTCCATGCAGGTTCAACGTTGAAACTGTGGAGTAC
AAGAACATCTCTTTTACTGTCTGGGACGTGGGGGGACAGGACAAGATCCG
TCCCCTCTGGCGACACTACTACCAAAACACCCAGGGTTTGATCTTCGTCG
TGGACTCGAATGACAGGGACCGTGTCGATGCTGGTGAGTGGAAGAAGGGA
TGCGCGCGTCGGGAGGGATCTCTTGGTCGTTGTCCGTGGTCTGTCTTCGG
AAGCCTTCGACGCGCGTTACCGAACTCTGCTTTCTCCGTAATTGACTCGT
TCAGTTCAAGTGCTCCTGAATTTGGTGATCTCATGCCTGATTGCACATCT
CACTCGATTTCTTGCATGTTCATAATTTTGTAGCCCGCGACGAATTGCAC
CGGATGCTGAACGAAGACGAGCTTCGAGACTCGATCTTGCTTGTCTTTGC
CAACAAACAGGACTTGCCGCAGGCCATGAATGCGGCCGAAATGACCGACA
AACTGGGCCTGTCATCTCTCCGTCATCGGCAGTGGTACATTCAGGTATGG
CTCTTTGGAAGATTGGCGAGAGGATAGGGAGTTGGGAACTGAACTGTTAT
TAAATTGACACATTTCCTCAATAAAACATCGCACATCCTTAAATGATGTC
TTGTACGTTCCCCGGTCTTGTGCTCTTCAAACATGCTCAGGCTTGCTGCG
CCACAAGTGGCGATGGGCTCTACGAAGGCTTGGACTGGTTGTCGGCCGCG
TTGCAAAAGCGCAAATAG
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Coding sequence (CDS) from alignment at CM002462.1:335502..336519-

>rna3891 ID=rna3891|Name=rna3891|organism=Nannochloropsis gaditana|type=CDS|length=2184bp|location=Sequence derived from alignment at CM002462.1:335502..336519- (Nannochloropsis gaditana)
GCTTGCTGCGCCACAAGTGGCGATGGGCTCTACGAAGGCTTGGACTGGTT
GTCGGCCGCGTTGCAAAAGCGCAAATAGCCCGCGACGAATTGCACCGGAT
GCTGAACGAAGACGAGCTTCGAGACTCGATCTTGCTTGTCTTTGCCAACA
AACAGGACTTGCCGCAGGCCATGAATGCGGCCGAAATGACCGACAAACTG
GGCCTGTCATCTCTCCGTCATCGGCAGTGGTACATTCAGGTTCAACGTTG
AAACTGTGGAGTACAAGAACATCTCTTTTACTGTCTGGGACGTGGGGGGA
CAGGACAAGATCCGTCCCCTCTGGCGACACTACTACCAAAACACCCAGGG
TTTGATCTTCGTCGTGGACTCGAATGACAGGGACCGTGTCGATGCTGATG
GGGTTGACATTCTCCCGGATTTGGGAGCGCATGTTCGGCAAGAAGGAAAT
GCGTATTTTGATGGTAGGCCTTGACGCAGCAGGGAAGACAACGATCCTTT
ACAAGCTGAAGCTGGGAGAGGTGGTCACCACAATCCCGACGATTGGGCTT
GCTGCGCCACAAGTGGCGATGGGCTCTACGAAGGCTTGGACTGGTTGTCG
GCCGCGTTGCAAAAGCGCAAATAGCCCGCGACGAATTGCACCGGATGCTG
AACGAAGACGAGCTTCGAGACTCGATCTTGCTTGTCTTTGCCAACAAACA
GGACTTGCCGCAGGCCATGAATGCGGCCGAAATGACCGACAAACTGGGCC
TGTCATCTCTCCGTCATCGGCAGTGGTACATTCAGGTTCAACGTTGAAAC
TGTGGAGTACAAGAACATCTCTTTTACTGTCTGGGACGTGGGGGGACAGG
ACAAGATCCGTCCCCTCTGGCGACACTACTACCAAAACACCCAGGGTTTG
ATCTTCGTCGTGGACTCGAATGACAGGGACCGTGTCGATGCTGATGGGGT
TGACATTCTCCCGGATTTGGGAGCGCATGTTCGGCAAGAAGGAAATGCGT
ATTTTGATGGTAGGCCTTGACGCAGCAGGGAAGACAACGATCCTTTACAA
GCTGAAGCTGGGAGAGGTGGTCACCACAATCCCGACGATTGGGCTTGCTG
CGCCACAAGTGGCGATGGGCTCTACGAAGGCTTGGACTGGTTGTCGGCCG
CGTTGCAAAAGCGCAAATAGCCCGCGACGAATTGCACCGGATGCTGAACG
AAGACGAGCTTCGAGACTCGATCTTGCTTGTCTTTGCCAACAAACAGGAC
TTGCCGCAGGCCATGAATGCGGCCGAAATGACCGACAAACTGGGCCTGTC
ATCTCTCCGTCATCGGCAGTGGTACATTCAGGTTCAACGTTGAAACTGTG
GAGTACAAGAACATCTCTTTTACTGTCTGGGACGTGGGGGGACAGGACAA
GATCCGTCCCCTCTGGCGACACTACTACCAAAACACCCAGGGTTTGATCT
TCGTCGTGGACTCGAATGACAGGGACCGTGTCGATGCTGATGGGGTTGAC
ATTCTCCCGGATTTGGGAGCGCATGTTCGGCAAGAAGGAAATGCGTATTT
TGATGGTAGGCCTTGACGCAGCAGGGAAGACAACGATCCTTTACAAGCTG
AAGCTGGGAGAGGTGGTCACCACAATCCCGACGATTGGGCTTGCTGCGCC
ACAAGTGGCGATGGGCTCTACGAAGGCTTGGACTGGTTGTCGGCCGCGTT
GCAAAAGCGCAAATAGCCCGCGACGAATTGCACCGGATGCTGAACGAAGA
CGAGCTTCGAGACTCGATCTTGCTTGTCTTTGCCAACAAACAGGACTTGC
CGCAGGCCATGAATGCGGCCGAAATGACCGACAAACTGGGCCTGTCATCT
CTCCGTCATCGGCAGTGGTACATTCAGGTTCAACGTTGAAACTGTGGAGT
ACAAGAACATCTCTTTTACTGTCTGGGACGTGGGGGGACAGGACAAGATC
CGTCCCCTCTGGCGACACTACTACCAAAACACCCAGGGTTTGATCTTCGT
CGTGGACTCGAATGACAGGGACCGTGTCGATGCTGATGGGGTTGACATTC
TCCCGGATTTGGGAGCGCATGTTCGGCAAGAAGGAAATGCGTATTTTGAT
GGTAGGCCTTGACGCAGCAGGGAAGACAACGATCCTTTACAAGCTGAAGC
TGGGAGAGGTGGTCACCACAATCCCGACGATTGG
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Synonyms
Publications