EWM26802.1, cds3882 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26802.1
Unique Name	cds3882
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:336371..336519 -
Alignment location	CM002462.1:336087..336244 -
Alignment location	CM002462.1:335726..335886 -
Alignment location	CM002462.1:335502..335579 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26802.1
Product	adp-ribosylation factor
Orig transcript id	gnl\|cribi\|Naga_100018g11.2782.mrna
Gene	Arf1
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:336371..336519 -
CM002462.1	supercontig	CM002462.1:336087..336244 -
CM002462.1	supercontig	CM002462.1:335726..335886 -
CM002462.1	supercontig	CM002462.1:335502..335579 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0007165	signal transduction
GO:0006886	intracellular protein transport
GO:0015031	protein transport
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR006687	Small_GTPase_SAR1
IPR003579	Small_GTPase_Rab_type
IPR024156	Small_GTPase_ARF
IPR006689	Small_GTPase_ARF/SAR

Homology

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|585108893|gb|EWM26802.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 376.711 bits (966), Expect = 2.199e-132
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK
Sbjct:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|298704815|emb|CBJ48963.1| (Arf1, ARF family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 360.147 bits (923), Expect = 1.034e-125
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MGL FSR+WERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+SILLVFANKQDLP AM+AAEMTDKLGL  LRHRQWYIQACCAT+GDGLYEGLDWLSA L KRK
Sbjct:    1 MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLSKRK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|676384337|ref|XP_009035447.1| (ADP-ribosylation factor [Aureococcus anophagefferens] >gi|323453500|gb|EGB09371.1| ADP-ribosylation factor [Aureococcus anophagefferens])

HSP 1 Score: 358.607 bits (919), Expect = 3.999e-125
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MGL FSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVD ARDELHRMLNEDELR+SILLVFANKQDLP AM+AAEMTDKLGL+ LRHRQWYIQACCAT+GDGLYEGLDWLSA L KRK
Sbjct:    1 MGLAFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDNARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLNGLRHRQWYIQACCATTGDGLYEGLDWLSATLTKRK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|669150270|ref|XP_008610697.1| (ADP-ribosylation factor [Saprolegnia diclina VS20] >gi|673049391|ref|XP_008878656.1| ADP-ribosylation factor 2 [Aphanomyces invadans] >gi|698792854|ref|XP_009829459.1| ADP-ribosylation factor 2 [Aphanomyces astaci] >gi|813142233|ref|XP_012199223.1| ADP-ribosylation factor [Saprolegnia parasitica CBS 223.65] >gi|530737693|gb|EQC35935.1| ADP-ribosylation factor [Saprolegnia diclina VS20] >gi|574116116|gb|ETV81601.1| ADP-ribosylation factor 2 [Aphanomyces astaci] >gi|574465584|gb|ETV92620.1| ADP-ribosylation factor 2 [Aphanomyces invadans] >gi|641536146|gb|KDO30042.1| ADP-ribosylation factor [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 357.836 bits (917), Expect = 7.622e-125
Identity = 169/181 (93.37%), Postives = 176/181 (97.24%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MG+ FSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLP AM+AAEMTDKLGL  LRHRQW+IQACCAT+GDGLYEGLDWLSA LQKRK
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKRK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|953487664|emb|CEG48492.1| (adp-ribosylation factor [Plasmopara halstedii])

HSP 1 Score: 357.451 bits (916), Expect = 2.183e-124
Identity = 167/181 (92.27%), Postives = 176/181 (97.24%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MG+ FSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDS+LLVFANKQDLP AM+AAEMTDKLGL  LRHRQW+IQACCAT+GDGLYEGLDWLSA LQK+K
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKQK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|1173927817|gb|OQR81623.1| (ADP-ribosylation factor family [Thraustotheca clavata])

HSP 1 Score: 356.681 bits (914), Expect = 2.210e-124
Identity = 168/181 (92.82%), Postives = 176/181 (97.24%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MG+ FSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLP AM+AAEMTDKLGL  LRHRQW+IQACCAT+GDGLYEGLDWLSA LQK+K
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKKK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|301103610|ref|XP_002900891.1| (ADP-ribosylation factor family [Phytophthora infestans T30-4] >gi|695396855|ref|XP_009521591.1| putative GTP-binding ADP-ribosylation factor [Phytophthora sojae] >gi|262101646|gb|EEY59698.1| ADP-ribosylation factor family [Phytophthora infestans T30-4] >gi|348686488|gb|EGZ26303.1| putative GTP-binding ADP-ribosylation factor [Phytophthora sojae] >gi|566013332|gb|ETI36243.1| ADP-ribosylation factor 1 [Phytophthora parasitica P1569] >gi|570316989|gb|ETO64937.1| ADP-ribosylation factor 1 [Phytophthora parasitica P1976] >gi|570940780|gb|ETP06037.1| ADP-ribosylation factor 1 [Phytophthora parasitica CJ01A1] >gi|970624104|gb|KUF72061.1| ADP-ribosylation factor 2-B [Phytophthora nicotianae])

HSP 1 Score: 355.525 bits (911), Expect = 5.932e-124
Identity = 167/181 (92.27%), Postives = 176/181 (97.24%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MG+ FSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDS+LLVFANKQDLP AM+AAEMTDKLGL  LRHRQW+IQACCAT+GDGLYEGLDWLSA LQK+K
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKQK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|301103608|ref|XP_002900890.1| (ADP-ribosylation factor family [Phytophthora infestans T30-4] >gi|262101645|gb|EEY59697.1| ADP-ribosylation factor family [Phytophthora infestans T30-4] >gi|566013331|gb|ETI36242.1| ADP-ribosylation factor 1 [Phytophthora parasitica P1569] >gi|953489085|emb|CEG47459.1| adp-ribosylation factor [Plasmopara halstedii] >gi|970624120|gb|KUF72077.1| ADP-ribosylation factor [Phytophthora nicotianae] >gi|970659623|gb|KUF97247.1| DnaJ subfamily C member 7 [Phytophthora nicotianae] >gi|1214703736|gb|OWZ15702.1| ADP-ribosylation factor protein [Phytophthora megakarya])

HSP 1 Score: 355.14 bits (910), Expect = 9.613e-124
Identity = 167/181 (92.27%), Postives = 175/181 (96.69%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLRHRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MG+ FSR++ER+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDS+LLVFANKQDLP AM+AAEMTDKLGL  LRHRQW+IQACCAT+GDGLYEGLDWLSA LQK K
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKAK 181

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|219111535|ref|XP_002177519.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412054|gb|EEC51982.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 349.362 bits (895), Expect = 1.939e-121
Identity = 167/182 (91.76%), Postives = 174/182 (95.60%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLR--HRQWYIQACCATSGDGLYEGLDWLSAALQKR 180
            MGLTFSR+WERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSND DR+DAARDELHRMLNEDELRD++LLVFANKQDLP AM+AAEMTDKLGL  LR  +RQWYIQACCAT+GDGLYEGLDWLSA L KR
Sbjct:    1 MGLTFSRVWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDSDRIDAARDELHRMLNEDELRDAVLLVFANKQDLPNAMSAAEMTDKLGLHGLRPSYRQWYIQACCATTGDGLYEGLDWLSATLVKR 182

[Close]

BLAST of EWM26802.1 vs. NCBI_GenBank
Match: gi|223993519|ref|XP_002286443.1| (adp-ribosylation factor [Thalassiosira pseudonana CCMP1335] >gi|220977758|gb|EED96084.1| adp-ribosylation factor [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 347.051 bits (889), Expect = 1.522e-120
Identity = 166/183 (90.71%), Postives = 175/183 (95.63%), Query Frame = 0

Query:    1 MGLTFSRIWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPQAMNAAEMTDKLGLSSLR--HRQWYIQACCATSGDGLYEGLDWLSAALQKRK 181
            MGLTFSR++ERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSND DR+DAARDE+HRMLNEDELRD++LLVFANKQDLP AM+AAEMTDKLGL  LR  +RQWYIQACCAT+GDGLYEGLDWLSA L KRK
Sbjct:    1 MGLTFSRLFERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDSDRIDAARDEMHRMLNEDELRDAVLLVFANKQDLPNAMSAAEMTDKLGLHGLRPSYRQWYIQACCATTGDGLYEGLDWLSATLVKRK 183

The following BLAST results are available for this feature:

BLAST of EWM26802.1 vs. NCBI_GenBank

BLAST of EWM26802.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585108893\|gb\|EWM26802.1\|	2.199e-132	100.00	adp-ribosylation factor [Nannochloropsis gaditana]	[more]
gi\|298704815\|emb\|CBJ48963.1\|	1.034e-125	94.48	Arf1, ARF family GTPase [Ectocarpus siliculosus]	[more]
gi\|676384337\|ref\|XP_009035447.1\|	3.999e-125	94.48	ADP-ribosylation factor [Aureococcus anophageffere...	[more]
gi\|669150270\|ref\|XP_008610697.1\|	7.622e-125	93.37	ADP-ribosylation factor [Saprolegnia diclina VS20]...	[more]
gi\|953487664\|emb\|CEG48492.1\|	2.183e-124	92.27	adp-ribosylation factor [Plasmopara halstedii]	[more]
gi\|1173927817\|gb\|OQR81623.1\|	2.210e-124	92.82	ADP-ribosylation factor family [Thraustotheca clav...	[more]
gi\|301103610\|ref\|XP_002900891.1\|	5.932e-124	92.27	ADP-ribosylation factor family [Phytophthora infes...	[more]
gi\|301103608\|ref\|XP_002900890.1\|	9.613e-124	92.27	ADP-ribosylation factor family [Phytophthora infes...	[more]
gi\|219111535\|ref\|XP_002177519.1\|	1.939e-121	91.76	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
gi\|223993519\|ref\|XP_002286443.1\|	1.522e-120	90.71	adp-ribosylation factor [Thalassiosira pseudonana ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3891	rna3891	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications