rna3890, rna3890 (mRNA) Nannochloropsis gaditana

Overview
Namerna3890
Unique Namerna3890
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4123
Alignment locationCM002462.1:335195..335480 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g12.2784.mrna
Orig protein idgnl|cribi|Naga_100018g12.2784
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:335195..335480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g12gene3742Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3890rna3890-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26804.1cds3881Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3890 ID=rna3890|Name=rna3890|organism=Nannochloropsis gaditana|type=mRNA|length=4123bp
TCCATTTGTCTCATTGTGTCCACAATCTTCTGCCTCATTGCTTTTCATTA
TTCTGATGACGATGGTAGGTCGATTTCGCAATCATGCGTCTACCGCGGGG
GACGCCCTCACTCCTTCTGTCCATCAACCTGCTTTGGTGCCTCAATGCTC
AAGGGATAGCATGGAATAGGGGGCTTTCCAACAGAAATAAGGATATTATT
GAGGAAGACCTTCCAAGCCTCCCTGCGGAGGTGGTTGATCCAACAATTCC
CATACTTTCCCCTACGCCTGAAGCACCCTCCGGGTTGGACTTGAAAGGCG
TGGATGCTCAATCCCTCATCAATCCGGATTTTGTCGGCCGATTGATTCCC
GCTGGGCAATGCGGTGTCTACAGACGTGGATCGAATGGAGCAGAAGTGTC
CTTGTGCGTAGAGAGCGTTGTGGAATACGGAAATGACCTGAAGCAGCTAA
ATGCTTTTTTGGTGAATTCCGGGACTGCCGGTCTGTGTGACTTTTTGATT
AGGCCCTTTGTCCCGACGGGAGCGACAATGGACTCATTTTGGCCGGATTG
GGCCCTGGAAGATATGAGTGAAGTTTACATCGAACCTGCACAAATAATCG
CTATTGGGATGACTGTTGTTCCGGGCCCACAAGATAGTCCTCAGAGCCTT
CCTCGCATTGACGTCGTGGCCTTCAAAGATTGCTCGCCCAGTGGAGTAGA
CGCCGATCAAGACGATGTAAATTTTGAAATATCACCCATTGACATGATGA
TGCCGGAAGCTGTTGTAATAACGGCAGCGGCCGGCGACCCCATGCAAAAG
AGGCCAGCGACCAAGCAGGAGCAGCAGGTACTAGCGACCGTACCCGAAGA
AGGCCAGTGTGCTATCTATTCAAAACCTGCTTCAGGTACAAACACGGCTC
AAGCTACGCTCTGTATTGAATCTATCCTGCATGGGGGCTCCGATGTTGTA
CAAGTGAATGGCCTCCTGCTCAATACGGGAACTGCTCCTCTCTGCACCGT
ACGCTTGGCCGCGGAGCAGGATGCACAGTACTCTTCCATGTGGCCTCGGT
GGGCATCACAAGGGCATTCTAAAGACAATTTTATGCCCGGCGACGCCATT
GCCGTCGGGCTGACGTCACCTGGGCGGGCGGATGGCTCGCGCCCTGCCCT
TGCTCTCGAAAATTTTGACGTTTGCGGTCATCCTAGCACGGCAGATGTTG
TGCGTGATCCTTCTACTGGCGCAGTTTTACGACCATCACCCTTGGAGGTG
GTGCTAGTGAGCATGGACGACACGTTGGGAGCGCCTGAGTGGGTGAGCTT
GGCAGACTACCAGGAAGCTCGTGGCGACGAGGAAAGGCAAGCAATCGATA
CTGATACCTCCGCAACAATGGAGACCCGCCAAGCAGAGGATACTACCGCG
GGTACCAAAATTGATGCATTTGGGGCGACTCCGGAACAACTAGCCATTCC
TGCGGGCGTGTGCGGGGTCTATCGAAAAGGTGCAGCTGAGCTCTCCATAT
GCTCCGAGAGCGTGGTGACGTGGGGACAGGATGTACAACAACTCAATGGC
TTCATGATGAACACAGGTAATCGAACCATATGTGACATCCGGATCCGACC
GGCTTTGCCTTCGGCGAGTGAAACGCCTTATTCGTTGTGGCCCGATTGGG
CGAGCGACGCCTCGTACGAAGTGTTCTTCGACCCCGGCCAAATGACGGCA
GTGGGCATGACCGGCCCGCCCACCAATACCACGCCGTACATCGAGATCGT
CTCCTTCCGCGACTGCAAAGATGCTGCCGAGATGGCCACGTCTGCACTGT
CGTCGTTCTCAACCGTGCCTATTGAGACGGTGCAGCCCCCGTCACCACAA
GAGGAGCTTACATCCATTCCAGTGGCCGTCCCGATCCCGTCCACAGAGGC
TGCAAAAGAGGGATTCGATGACATGCTCCCAGAGCCCGTGGGGGAAGAGT
CCATGGACACCATTCGCGAAGGCTGGTGCGCACTCCACACCATCCGCTCC
AGCACGATGGCCCTGTGCCTTGAGTCCATCATCCATTGGGGCACCACATT
AGTCCAGGTCAACACGTTCCTGATGAATCTGAACGAGGAGGACGACGTCT
GCGACGTGGAGGTGGCCATTTCCACCGGCCCTGAAGGCTTCGACTCCCTG
TGGCCGAGATGGGTGCGGCAGGGCACCTACAAGAAACACGTGAGTCCAGG
CGAAGCCCTGCCTGTCGGCGTAGCAGCGCCCTATGATAAAGCACAGCCCA
GGAACAGTCCAGTCATTGCCCTCAGAAATTTCCGCGCCTGCGCCGAGAAG
AAAGGGTTACCCGTTGAAGCAGGAGACATTTCGCCTCTTGTTTTCCTCCC
CATTGGTATGGTCAAGCGCGTCGATGAAGGCCCATCGCTCCCGCGTGTAG
AAAAGGAAGTTAATACAGCCGAAGGGCTCGCTAGGCGCATGCAAGAGGAA
GACGCCGAGCTGTCACCTGTCTCTGTGAGTCCTGGTCGTTGTGGGATGGC
TACAGGAATGGCAGGCTTGTTCCAAATCAGGCTGTGCGTGGACAGGGCAA
ATACGTGGGGCGATGGCATTGTGCAGCTGGCAGGCCGGGTCGAAAATTCA
GGAAAGGAGGCGATCTGTGACATGCGACTCGGAAGCAATTTTGAAAAGGT
TTCAATCGCCACGTCTTGGCCGGCCACCTCCGCAGCTGGAGAAGACTTTG
AGGCACTGCTCCCGGGGGAAACGCGGGAGATCGGCCTGACGGCCTCCCCC
CGCGGACTGATTGAGGGGGTAGCTCCGATGCTTTCGGTAACCTCCTTCCG
GCCGTGCGGACGGCAGGGTTTGGCCGTTCCGTCCCCTCCCCAGCCGCTAC
AACTCACGTGGGAAGGTCCCTCGGCCGAAACCGCAAAACATGTGCTACAA
ATAAGTGGATTTAGCCATCAAGACCTGGGCGAAGGAGTGCAGGCAGAGAG
CGAGCAGCGTCATCTGGCGAGCAAAGGAAAGGCGGCCCCGACCACGTTTG
ATACGATCGATTGGGAGCTGTGCGGGTACTACACGGGCTTGGATGGCGAA
TCGGAGTTGGCACTTTGTTGGAAGGACGCGAAAAGCTGGAAGGACCGGGA
GATGGGCCGAATCGTGCAGACGAATCTGGTGCTGGTCAACACGGGCAAGC
TTGGTGTCTGCAATGTCACTTTGGAGATCGAAAACTTGGACTCGGAGCTC
GGCGATCATTACCCGAACAATTGGATGGATGACGACGGGAGGGAGACTTT
CCCTTCCTACCCTGGCTACTATGCGCCAGAGCAAATCGTCAACTTGGGAG
CTGCCGTCCCTATTGCCAGCGGCTTCCCAGACGTCAGCATAGCGCCGACG
TTCACCGCTTGTCAACCCCCACCCCCAAAGCCCGTGGCGCCCCGCAAGGC
GGACTGTACAGAAGTACCCGGAAGCGGGGCCAACGCTGATGTTTTGCTAA
ATTTTTGTTTGTATAGCAAGCCCAAAATCTGGCGCGAATACGAAGGGCCC
CGTATAGTCATGGTCGAGGGGTACATTGAAAACATCGGTCAAGGAACGGC
TTGCAACATCGAAGTAGATATCGAAAACCTTCAAGACGCGCAAGCCACGT
GGGGAGAATGGATGCCCACTTACCCTTACAAGCTGTCTCCTGGCAGTACA
CTGAAATTTGGTGCAAACATTCCTTATAAGAAAGGCATTCCAAAGAGCCA
TCTTGTGAGTTTCGATAGTTGCGATTCTTTAGAAACGCGCCGTAAAATGT
GAGAGACAACACCATAAGCAGCACATCCGTACATTTAGAAATGCTCCTGA
GGTAAGCGGTAAAAGGGTGAATAAAAAACAAAATTTAATTCGCCAAAAGG
ACTGGTAAGCTGGCCAACGGTCCTATGGAAAGTTCAGCTTATCAAAGAAA
ACATATCAAGAAGGCGCAAAGATATAATTTTTGCCGGAGGACTTATGCGT
GAATATTGAAAGAGAGGGCAGAGAGAAGCAAAAAAAATGGAAGTGCCAGC
GCATTGCATCGACGCGTACAAAATGGGGTCGAAAGAAAAAATGGCAGAAC
TCATAAAGTTGCTTTGGCTTTGCATTATAATATCATTGTTTCCGAGCAGA
AGAAAAGATTGCTACTATTTTCC
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protein sequence of rna3890

>rna3890-protein ID=rna3890-protein|Name=rna3890|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MTKARSGAMNRSWFVVLVHLYGWMECCLKLSTTNPIMYLHLLDACCKLPR
TIQFFPAGKKQTGTDGMMSWVEDERGMMVM
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mRNA from alignment at CM002462.1:335195..335480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3890 ID=rna3890|Name=rna3890|organism=Nannochloropsis gaditana|type=mRNA|length=286bp|location=Sequence derived from alignment at CM002462.1:335195..335480- (Nannochloropsis gaditana)
ATGACTAAAGCACGAAGTGGAGCAATGAATAGGTCGTGGTTTGTCGTCTT
AGTCCATTTGTATGGATGGATGGAGTGTTGTTTGAAACTTAGCACCACGA
ACCCTATAATGTACCTTCATCTTCTTGACGCATGTTGTAAGTTACCCCGT
ACAATTCAATTTTTTCCAGCGTGACGCGAAGGAGCAGGCGCATGGTATCC
TCTCTCATCGAAGTGGAAAGAAGCAGACTGGAACAGACGGGATGATGAGT
TGGGTGGAGGATGAGCGGGGAATGATGGTAATGTAG
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Coding sequence (CDS) from alignment at CM002462.1:335195..335480-

>rna3890 ID=rna3890|Name=rna3890|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002462.1:335195..335480- (Nannochloropsis gaditana)
TGGAAAGAAGCAGACTGGAACAGACGGGATGATGAGTTGGGTGGAGGATG
AGCGGGGAATGATGGTAATGTAGATGACTAAAGCACGAAGTGGAGCAATG
AATAGGTCGTGGTTTGTCGTCTTAGTCCATTTGTATGGATGGATGGAGTG
TTGTTTGAAACTTAGCACCACGAACCCTATAATGTACCTTCATCTTCTTG
ACGCATGTTGTAAGTTACCCCGTACAATTCAATTTTTTCCAGCTGGAAAG
AAGCAGACTGGAACAGACGGGATGATGAGTTGGGTGGAGGATGAGCGGGG
AATGATGGTAATGTAGATGACTAAAGCACGAAGTGGAGCAATGAATAGGT
CGTGGTTTGTCGTCTTAGTCCATTTGTATGGATGGATGGAGTGTTGTTTG
AAACTTAGCACCACGAACCCTATAATGTACCTTCATCTTCTTGACGCATG
TTGTAAGTTACCCCGTACAATTCAATTTTTTCCAGC
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Synonyms
Publications