rna3888, rna3888 (mRNA) Nannochloropsis gaditana

Overview
Namerna3888
Unique Namerna3888
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1599
Alignment locationCM002462.1:328353..330061 -

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Properties
Property NameValue
ProductSiva
Orig transcript idgnl|cribi|Naga_100018g14.2815.mrna
Orig protein idgnl|cribi|Naga_100018g14.2815
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:328353..330061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g14gene3740Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26835.1cds3879Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3888rna3888-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3888 ID=rna3888|Name=rna3888|organism=Nannochloropsis gaditana|type=mRNA|length=1599bp
ATGGAAGACGACCTCTCGGTGGCTAGGGGGGCTCTCCTTTCGGGCTGTGC
TCCTCTTTTGGCCTTCACGACCCGGTCTCATGGCAAGGGCATGGCCCAAC
AAGACCAAAATGAAGACGTGAGTGCCGGTTCAAAGAATGAGCCAGTCCCT
CGTGCAGATGAGGCAGGCCCGCCTGCTACGTCCGGCATCGGAATCGGCGC
GGGAACTTTTAGTGAGGAGGACAAGGGAAAACAGATGAATGGGACTGATC
CTAGCATCGCGGAGTCCATGGAATCTCCAGCAGTGGGGACCGTCATGGAT
ACGGTGCAGCAGCCAGTAAACGGTCACGTCCAAGGGAAAAATTGCATTGT
CTCGAATCCCGAAGAGCCCAGTAGTGTCCGGGACCCTCAAGCTAAGCTCT
CTGCAATGCTCCCCGGTCGGGAAGCACCACCGGCAATGGCCGAGACAGGA
GCTGGGATTGACGTCGCGAAACCCCAAGCATCTGGAGACATAACCTTTTG
CTTGGTGGAAAACAATGGTACGCCGGAAAACTCTGAGCGTTTGGTGGCTC
TGAAGAACATCTTTGCCAAGCAACTCCCCAAGATGCCGAAAGAGTACATC
GTTCGCCTCGTCTTCGACCGTCGACACCGCGCGGTGGCTCTTTGTCGGGG
AAAGCTGGTCATTGGCGGCATCTGTTACAGGCCGTACCCCTCGCAGCGGT
TTGCAGAGATCGCGTTCTGCGCCATCATGGCGACCGAGCAAGTGAAGGGC
TACGGGACGCGGTTGATGAATCATTTGAAGGAGCAGGCCAAGAGGGAGGG
GCTTCGGTACTTTCTAACGTACGCAGACAATTATGCCATCGGTTACTTTA
GGAAGCAAGGCTTTTCCAAGACGCTGGGCATGCCCCGCGCGCAGTGGATG
GGCTACATCAAGGACTATGACGGGGCCCACCTGATGGAGTGCTACGTGCA
CCCAACCATCAACTACCTGGACGTTCCTGACATCATTGCCCGGCAGCGCG
CCTACATCCACTCGAGACTGAAAGTTAAGTCCAAGTCCCACGTCATCTAC
CCTGGACTTGCCTGCTTCAAGGCACTGAAGGAGGGCGGGAAGGAGGGCGG
GCGTGTCCGGGACGTGATGGAGGTGCCCGGGATTAAAGAGGCGGGCTGGA
ACCTGAGGGAGTCGGGGCCCGTCTCACAGAGAGACACAGACCGCGAGCGA
GCAGCGCTTCAATTGTTTTTGAACGGAATCTTGCGGGAGGTCTATAACCA
CCGGGCGGCATGGCCCTTCGTGGAGCCGGTGGACACGAGCGAGGTGCCCG
ACTACCTGGACGTGGTGTCGGATCCGATCGATCTCTCCTTGATAGAGCGG
CGGATAAAGGAGGGGCAGTCCGAGGCAGGGAGTGGAGGGGGATACTACCG
GAACAAGGAAATGTTGCTGGCCGATCTGATGAGGATGTGTCGAAATTGTA
AAAAATATAACGATCCCAGCACCGACTACTATGCGGCGGGACAGGAAATG
GAGGGATTCGTGCGTCAATTGTTCAAGAAGGCCTTGGCGAAGGGAGAAGG
AACGGGGGGGGAGGAGATTGTGGGCAAGAAAGGCGTTGGAGAGGGGTAG
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protein sequence of rna3888

>rna3888-protein ID=rna3888-protein|Name=rna3888|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MFQPPSTWGWSRRDENAAPPPPSFAASTNVSCKFEDKTKGPRRQYPTTFA
NKGVSVGRKRQVLGALSSPAVSGHSEPEGNKHTEFVSARPWKQPCLQPCT
QYTSNRIMSDTVIQEPLNPCGMEEDGGDDREECCIPSNLHHAASHVTPPT
LAGQSRRQTAAYRKDDVLSHPSLTSPEGMSVQQQQRQNNENRWGDAPRLA
SDSQRCDVCLPPPRPDDPQRCFNYSLRQSRHPQEMAAIAQWAGGLHPRLG
QPPPLLSWQKQESELLAEDRLERRQQEPMLVSPGRVQSVKEAATSTAGCW
ASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCG
H
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mRNA from alignment at CM002462.1:328353..330061-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3888 ID=rna3888|Name=rna3888|organism=Nannochloropsis gaditana|type=mRNA|length=1709bp|location=Sequence derived from alignment at CM002462.1:328353..330061- (Nannochloropsis gaditana)
TGGAAATCACGTTGGATCGGTTCAATGTTTCAGCCCCCTTCCACCTGGGG
ATGGTCCCGTCGGGATGAGAACGCAGCACCACCTCCTCCCTCGTTCGCAG
CCTCAACAAACGTGTCTTGCAAGTTTGAAGACAAGACAAAAGGCCCTCGC
AGGCAATACCCGACCACTTTTGCAAACAAAGGGGTCAGCGTCGGTAGGAA
ACGACAAGTGCTAGGGGCATTGTCATCCCCTGCGGTATCCGGGCACTCGG
AACCGGAAGGAAACAAACATACCGAGTTTGTGTCCGCCCGGCCATGGAAA
CAACCTTGCTTGCAGCCCTGCACTCAGTATACGTCTAACCGCATCATGAG
CGATACGGTTATACAAGAACCACTCAATCCATGTGGGATGGAAGAGGATG
GGGGAGATGACAGAGAAGAATGTTGCATACCATCCAACCTGCACCATGCA
GCCAGTCACGTTACCCCCCCTACTTTGGCGGGACAGTCTCGGCGTCAGAC
CGCAGCATACAGGAAAGATGATGTCTTATCTCACCCCTCCCTTACGAGCC
CCGAAGGGATGAGTGTACAGCAACAGCAGCGCCAAAATAACGAAAATCGT
TGGGGGGATGCTCCGAGGCTTGCGTCGGATTCGCAGAGATGCGACGTGTG
CCTGCCACCGCCAAGACCAGACGACCCTCAAAGATGTTTCAACTACTCCT
TGAGGCAAAGCCGGCATCCACAAGAAATGGCAGCTATTGCCCAATGGGCG
GGAGGACTTCATCCGCGACTAGGACAGCCCCCCCCCCTGTTGTCCTGGCA
GAAGCAGGAAAGCGAGCTTCTTGCCGAGGACCGGCTCGAACGTAGACAAC
AGGAGCCGATGCTTGTCTCGCCGGGGCGCGTGCAGTCAGTAAAGGAGGCC
GCCACCTCCACAGCTGGCTGTTGGGCGTCTGTCGCTCAGTGCCGGCACTG
CGAACGGGGCGTGTGCAAGACCTGTCTGCGGCACTGCGAGGCATGTCAGG
AACCTTTCTGCTCCATCTGCTCGACGGTAGACTACGGGGGAGCCTTCGAG
CGTGTGTTGTGCATCGATTGTGGGCATTAATCACCGGTGTAGGCACGTGT
TCGCCGTGGGACGGTCAATACATGGATCAGTCTCGAACAGAGGGGGTGCT
GATCACCCGGCGCTGAGCACCCCCCGGCCTGCAGAGCTTGACACAAAGTC
TGAAGGATCCATTTTGTGGATGAGAAAGGCCGCGGCCGATGTGTGGGGAC
GAGGGGTGTGGGAACGGCGGTCTTGAAGGGGGCCTGAGGACGAGAGGGCG
TAAGGACACGATTGCAGAACACGTGGCAACCAGATTGCCCAATACGTGGC
AACCAGATTGCCCAACACGAAGCAAGCAGACTACTGAAGACGGGGCGCGA
GCAAAAGGTGTGTCGCCTGTGAGGCTCACTGAAGAACAAGTGAGGAGAAG
GCGCCTCCCGGGCTGTGATGGAACATTTTCGAATGCTTTACGTGAATATG
ACTTGGCGGGTAACAGAATAAAGAAAGTAGTGTAGAATCGACACCCAATG
CCTCTACTACGCGTCCGAGGGGGCATACAAAGGGCTGTAAGACCTTCAGA
ATCCGCCTGTTCAGTACCTTCAGCAAAAGAAAAAGGAGGACGACTGCGGA
AAGCCACGCCTGCGTGCGTGTTTCTCTTCCCATGGTCTCGACTTTCCTTC
AAGTCCTCC
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Coding sequence (CDS) from alignment at CM002462.1:328353..330061-

>rna3888 ID=rna3888|Name=rna3888|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002462.1:328353..330061- (Nannochloropsis gaditana)
ATGTTTCAGCCCCCTTCCACCTGGGGATGGTCCCGTCGGGATGAGAACGC
AGCACCACCTCCTCCCTCGTTCGCAGCCTCAACAAACGTGTCTTGCAAGT
TTGAAGACAAGACAAAAGGCCCTCGCAGGCAATACCCGACCACTTTTGCA
AACAAAGGGGTCAGCGTCGGTAGGAAACGACAAGTGCTAGGGGCATTGTC
ATCCCCTGCGGTATCCGGGCACTCGGAACCGGAAGGAAACAAACATACCG
AGTTTGTGTCCGCCCGGCCATGGAAACAACCTTGCTTGCAGCCCTGCACT
CAGTATACGTCTAACCGCATCATGAGCGATACGGTTATACAAGAACCACT
CAATCCATGTGGGATGGAAGAGGATGGGGGAGATGACAGAGAAGAATGTT
GCATACCATCCAACCTGCACCATGCAGCCAGTCACGTTACCCCCCCTACT
TTGGCGGGACAGTCTCGGCGTCAGACCGCAGCATACAGGAAAGATGATGT
CTTATCTCACCCCTCCCTTACGAGCCCCGAAGGGATGAGTGTACAGCAAC
AGCAGCGCCAAAATAACGAAAATCGTTGGGGGGATGCTCCGAGGCTTGCG
TCGGATTCGCAGAGATGCGACGTGTGCCTGCCACCGCCAAGACCAGACGA
CCCTCAAAGATGTTTCAACTACTCCTTGAGGCAAAGCCGGCATCCACAAG
AAATGGCAGCTATTGCCCAATGGGCGGGAGGACTTCATCCGCGACTAGGA
CAGCCCCCCCCCCTGTTGTCCTGGCAGAAGCAGGAAAGCGAGCTTCTTGC
CGAGGACCGGCTCGAACGTAGACAACAGGAGCCGATGCTTGTCTCGCCGG
GGCGCGTGCAGTCAGTAAAGGAGGCCGCCACCTCCACAGCTGGCTGTTGG
GCGTCTGTCGCTCAGTGCCGGCACTGCGAACGGGGCGTGTGCAAGACCTG
TCTGCGGCACTGCGAGGCATGTCAGGAACCTTTCTGCTCCATCTGCTCGA
CGGTAGACTACGGGGGAGCCTTCGAGCGTGTGTTGTGCATCGATTGTGGG
CATTAA
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Synonyms
Publications