EWM26835.1, cds3879 (CDS) Nannochloropsis gaditana

Overview
NameEWM26835.1
Unique Namecds3879
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:328982..330037 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26835.1
ProductSiva
Orig transcript idgnl|cribi|Naga_100018g14.2815.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:328982..330037 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR022773Siva_cd27-bd
Homology
BLAST of EWM26835.1 vs. NCBI_GenBank
Match: gi|585108926|gb|EWM26835.1| (Siva [Nannochloropsis gaditana])

HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MFQPPSTWGWSRRDENAAPPPPSFAASTNVSCKFEDKTKGPRRQYPTTFANKGVSVGRKRQVLGALSSPAVSGHSEPEGNKHTEFVSARPWKQPCLQPCTQYTSNRIMSDTVIQEPLNPCGMEEDGGDDREECCIPSNLHHAASHVTPPTLAGQSRRQTAAYRKDDVLSHPSLTSPEGMSVQQQQRQNNENRWGDAPRLASDSQRCDVCLPPPRPDDPQRCFNYSLRQSRHPQEMAAIAQWAGGLHPRLGQPPPLLSWQKQESELLAEDRLERRQQEPMLVSPGRVQSVKEAATSTAGCWASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCGH 351
            MFQPPSTWGWSRRDENAAPPPPSFAASTNVSCKFEDKTKGPRRQYPTTFANKGVSVGRKRQVLGALSSPAVSGHSEPEGNKHTEFVSARPWKQPCLQPCTQYTSNRIMSDTVIQEPLNPCGMEEDGGDDREECCIPSNLHHAASHVTPPTLAGQSRRQTAAYRKDDVLSHPSLTSPEGMSVQQQQRQNNENRWGDAPRLASDSQRCDVCLPPPRPDDPQRCFNYSLRQSRHPQEMAAIAQWAGGLHPRLGQPPPLLSWQKQESELLAEDRLERRQQEPMLVSPGRVQSVKEAATSTAGCWASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCGH
Sbjct:    1 MFQPPSTWGWSRRDENAAPPPPSFAASTNVSCKFEDKTKGPRRQYPTTFANKGVSVGRKRQVLGALSSPAVSGHSEPEGNKHTEFVSARPWKQPCLQPCTQYTSNRIMSDTVIQEPLNPCGMEEDGGDDREECCIPSNLHHAASHVTPPTLAGQSRRQTAAYRKDDVLSHPSLTSPEGMSVQQQQRQNNENRWGDAPRLASDSQRCDVCLPPPRPDDPQRCFNYSLRQSRHPQEMAAIAQWAGGLHPRLGQPPPLLSWQKQESELLAEDRLERRQQEPMLVSPGRVQSVKEAATSTAGCWASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCGH 351          
BLAST of EWM26835.1 vs. NCBI_GenBank
Match: gi|929747845|ref|XP_014148906.1| (hypothetical protein SARC_12463 [Sphaeroforma arctica JP610] >gi|906939118|gb|KNC75004.1| hypothetical protein SARC_12463 [Sphaeroforma arctica JP610])

HSP 1 Score: 59.6918 bits (143), Expect = 1.110e-7
Identity = 28/69 (40.58%), Postives = 37/69 (53.62%), Query Frame = 0
Query:  288 SVKEAATSTAGCW-----ASVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCGH 351
            S+  A  S   CW     +  A+C  CER  C+ C R CE C E FCS+CST +Y   ++R  C+DC  
Sbjct:   13 SLPMATPSVHKCWVCSVMSECAECAFCERETCERCQRQCEGCLESFCSLCSTTNYDEKYDRTFCLDCNE 81          
BLAST of EWM26835.1 vs. NCBI_GenBank
Match: gi|1183468038|gb|ORY91967.1| (hypothetical protein BCR43DRAFT_497566 [Syncephalastrum racemosum])

HSP 1 Score: 57.7658 bits (138), Expect = 7.756e-7
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:  302 SVAQCRHCERGVCKTCLRHCEACQEPFCSICSTVDYGGAFERVLCIDCGH 351
            +V  C HCE  VC  C+  C ACQEP+CS CS +DY  + ERV+C  C +
Sbjct:   78 AVYACSHCEFVVCSNCIHPCSACQEPYCSGCSIIDYSHSSERVICRTCQY 127          
The following BLAST results are available for this feature:
BLAST of EWM26835.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108926|gb|EWM26835.1|0.000e+0100.00Siva [Nannochloropsis gaditana][more]
gi|929747845|ref|XP_014148906.1|1.110e-740.58hypothetical protein SARC_12463 [Sphaeroforma arct... [more]
gi|1183468038|gb|ORY91967.1|7.756e-750.00hypothetical protein BCR43DRAFT_497566 [Syncephala... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3888rna3888Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications