rna3886, rna3886 (mRNA) Nannochloropsis gaditana

Overview
Namerna3886
Unique Namerna3886
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1050
Alignment locationCM002462.1:324154..325546 -

Link to JBrowse

Properties
Property NameValue
Product50s ribosomal protein l19
Orig transcript idgnl|cribi|Naga_100018g17.2763.mrna
Orig protein idgnl|cribi|Naga_100018g17.2763
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:324154..325546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g17gene3738Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3886rna3886-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26783.1cds3877Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3886 ID=rna3886|Name=rna3886|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp
ATGCCAGCTACGCAAGGCAGTGCATCAGCGGCAGGCGCTGTGTCCTTGGT
ACAAAACGCCTTTACCTCAGGTGCCGCTACGTTAAGCGGCCTGCCTAGAT
ATGTTACGGCCAAGACACGTCCCAGGCCCCCTTCTCCGCCCAAAGCTCCT
AAGCTGACACCCCAAGAAGTAAACCTACAGCACACAGCTCGCATATTGTG
GACTCTTTCATTTGCTTTATTGTGGCTGAGTTTAACATCGCATGGCTGGC
AGCGAGCTAAGTATGAAGGTACTCGAGAAGTCGACGGGCAGAAATATCAT
CGAGCCTATATTGCCAATTACGGTCTGAGGAATATAGCTTTTGATCTTAC
GACCAGCCATGTAGTAGTACCGTACGCGAGCTGGACTATAGCTTTGGAGG
ATGACCAACTCCCGTACATCCTTATACTTCTTGTGCAGTTCTTTATGGCC
ATTGCCACCGTAGCAGGGACAGGGGTGTGCCTAGCTCATATCAGGGCCAA
ATGCGCAAGGACTGCCGAAGGGACCAATAAATATATGCGATATTCCGCAT
ATGCTGCCATCCCATTATTAACTTTCACCGGACTAGCTTCGGTGGCTTGG
AAATGTATTCCAACTTCGGCATTCTATGTGTTCTGTACAAATGCTGGCTG
CGTCAAGGAGGATGCGGAGGGCATAAAAGCAGTCGGAGTGTATTATGCAT
GGATTGGAAACTTGAGCTCTACGGTGTTGTCTTTCTTTCTTTTTTTGACG
CTTTGGCGCCTTTCACGGTATCAGGACAGCGATGAAACGGAAGAGGTTGA
GATACAGCTTGTAGACGATCAACACAACAAGCAAGCCATCATCAACGCCA
GGAACAAAGCTTTCCTTGTCGACGGGTCTGGGGGCGTAAATCCATTGAAA
ATGGGCGCCAAAGTATCCACTTCACTATCCATTCGGTCGCCTGCCGAGGC
TTGGAATCCACAAAGTGCACAGCTCCCTTACACTGCGGTCGGTAAGGTCC
AGAGCGGAGGCTTCGGGTCGACCCAACCGTCATGGTTGACAGGCGTTTGA
back to top

protein sequence of rna3886

>rna3886-protein ID=rna3886-protein|Name=rna3886|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNG
LSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNF
PTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGT
PILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSI
ST
back to top

mRNA from alignment at CM002462.1:324154..325546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3886 ID=rna3886|Name=rna3886|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002462.1:324154..325546- (Nannochloropsis gaditana)
ATGGCTATAAGAGCTTTGAAATGGCCGTGGATGCGATTTACGTCCTCAGC
TCTTCTCCCAAAGCCATTGCTAGGTGCTGGTGCAAGCAGGAAGAGTAGCG
GATGCCTTGCAGCCTTGACTCCTTCACGACAAGCATTTTCTTCTAATGGT
CTATCCGCCGACGCACCTGCATCAGGCCCTTCTGAAACTACTAAATATTC
GAAACACAAGACTCCACGCAAGAGGTACGCAGGATTACTCTTTGTGAAGA
ATATTTCTTGATATGTGAGAAGGACATGCTCTGTTCAGTTGAGACAAGAT
TTCAAGTTTTGAATGTGCACTCATTGCATTGGAGATGGGAGACGTGAGAG
GATTAAGTCCATTTGTTAAACACTTTCCCTTAAGTCCTGTTGCCTACAGA
TGTTGCACTTTCATTACATCTCCTCCTTCATTTATACTGTAGGGCCTCGT
CAGTGCTTGCCGAACTGAGGCGCATAGAGCACAGCAAGAGCATTTCTGCC
AATGCCGCCAAAAACTTCCCCACTTTTCGGGCCGGTGACTCGATCGAAGT
GAAGATGGTGACACATCTCTCCTCTACCGAGATAGACACCTATCGTGGAG
TTGTCCTCGGCATGCGTCGGAACGGTGCTGATTCGCGCTTTTTACTTGCT
GATGTGAGTAGTAGTAGTTGTGTCTGCTTTATGTTGTTCGTGAAGGGGAT
CCTGCGGTTGAGTGAGCGACACCGCACTATACGGAGGGAACTGTACTTTT
GAGAGACGGGAGTAGCGCATTCTCGCACGTAAGATCGGATACCGATATAC
ACATGGCTCGGACCATGGACTTCAAATAGGTGAAAGGATGTGCGTCATGT
ACTGAGTGTTAGATAAAAACCGCTTGACATATCTCTGGATGACGGCTGCA
AGGTTATGCATGTACGCTTGATATTTACCAGCTCGACAAATCTACCTTTT
TTTGATAACGCAATTCCTACACTCATCTCGTGGTACCAACCTCAAATTGT
CGACTTTTGACAGGTCTTCCTAGGCACACCGATCTTGAACAATATTCCGC
TGTATAGCCCCTTCATCAAGAGTTTAAAGGTATGCTGAATGATTTCGAGC
TACTTTTAAAATGGGGCATATAACGAACATGATCGATAGAAACGTAGGTG
TATGCTTGTAGAAGCAGCTTTTCAGGTGGTATATATATATATAAATATTT
CTCTCCTCGAAAAAGTAACATCCTGCGCTCTTGGCGAGAATTCTTCACTC
ATCTGTGAATTCTTCCTTGGCTCTTCTGAAATCAGGTGCTCCAGCCGGCC
TACATCCATAAGGGGAAGAAGCGTGTGCGTCGCTCGAAGCTTTACTATTT
GTGGGAAAAGCGTGACCCGAAATACTTTTCAATTTCCACATAG
back to top

Coding sequence (CDS) from alignment at CM002462.1:324154..325546-

>rna3886 ID=rna3886|Name=rna3886|organism=Nannochloropsis gaditana|type=CDS|length=2436bp|location=Sequence derived from alignment at CM002462.1:324154..325546- (Nannochloropsis gaditana)
GTGCTCCAGCCGGCCTACATCCATAAGGGGAAGAAGCGTGTGCGTCGCTC
GAAGCTTTACTATTTGTGGGAAAAGCGTGACCCGAAATACTTTTCAATTT
CCACATAGGTCTTCCTAGGCACACCGATCTTGAACAATATTCCGCTGTAT
AGCCCCTTCATCAAGAGTTTAAAGGGCCTCGTCAGTGCTTGCCGAACTGA
GGCGCATAGAGCACAGCAAGAGCATTTCTGCCAATGCCGCCAAAAACTTC
CCCACTTTTCGGGCCGGTGACTCGATCGAAGTGAAGATGGTGACACATCT
CTCCTCTACCGAGATAGACACCTATCGTGGAGTTGTCCTCGGCATGCGTC
GGAACGGTGCTGATTCGCGCTTTTTACTTGCTGATATGGCTATAAGAGCT
TTGAAATGGCCGTGGATGCGATTTACGTCCTCAGCTCTTCTCCCAAAGCC
ATTGCTAGGTGCTGGTGCAAGCAGGAAGAGTAGCGGATGCCTTGCAGCCT
TGACTCCTTCACGACAAGCATTTTCTTCTAATGGTCTATCCGCCGACGCA
CCTGCATCAGGCCCTTCTGAAACTACTAAATATTCGAAACACAAGACTCC
ACGCAAGAGGTGCTCCAGCCGGCCTACATCCATAAGGGGAAGAAGCGTGT
GCGTCGCTCGAAGCTTTACTATTTGTGGGAAAAGCGTGACCCGAAATACT
TTTCAATTTCCACATAGGTCTTCCTAGGCACACCGATCTTGAACAATATT
CCGCTGTATAGCCCCTTCATCAAGAGTTTAAAGGGCCTCGTCAGTGCTTG
CCGAACTGAGGCGCATAGAGCACAGCAAGAGCATTTCTGCCAATGCCGCC
AAAAACTTCCCCACTTTTCGGGCCGGTGACTCGATCGAAGTGAAGATGGT
GACACATCTCTCCTCTACCGAGATAGACACCTATCGTGGAGTTGTCCTCG
GCATGCGTCGGAACGGTGCTGATTCGCGCTTTTTACTTGCTGATATGGCT
ATAAGAGCTTTGAAATGGCCGTGGATGCGATTTACGTCCTCAGCTCTTCT
CCCAAAGCCATTGCTAGGTGCTGGTGCAAGCAGGAAGAGTAGCGGATGCC
TTGCAGCCTTGACTCCTTCACGACAAGCATTTTCTTCTAATGGTCTATCC
GCCGACGCACCTGCATCAGGCCCTTCTGAAACTACTAAATATTCGAAACA
CAAGACTCCACGCAAGAGGTGCTCCAGCCGGCCTACATCCATAAGGGGAA
GAAGCGTGTGCGTCGCTCGAAGCTTTACTATTTGTGGGAAAAGCGTGACC
CGAAATACTTTTCAATTTCCACATAGGTCTTCCTAGGCACACCGATCTTG
AACAATATTCCGCTGTATAGCCCCTTCATCAAGAGTTTAAAGGGCCTCGT
CAGTGCTTGCCGAACTGAGGCGCATAGAGCACAGCAAGAGCATTTCTGCC
AATGCCGCCAAAAACTTCCCCACTTTTCGGGCCGGTGACTCGATCGAAGT
GAAGATGGTGACACATCTCTCCTCTACCGAGATAGACACCTATCGTGGAG
TTGTCCTCGGCATGCGTCGGAACGGTGCTGATTCGCGCTTTTTACTTGCT
GATATGGCTATAAGAGCTTTGAAATGGCCGTGGATGCGATTTACGTCCTC
AGCTCTTCTCCCAAAGCCATTGCTAGGTGCTGGTGCAAGCAGGAAGAGTA
GCGGATGCCTTGCAGCCTTGACTCCTTCACGACAAGCATTTTCTTCTAAT
GGTCTATCCGCCGACGCACCTGCATCAGGCCCTTCTGAAACTACTAAATA
TTCGAAACACAAGACTCCACGCAAGAGGTGCTCCAGCCGGCCTACATCCA
TAAGGGGAAGAAGCGTGTGCGTCGCTCGAAGCTTTACTATTTGTGGGAAA
AGCGTGACCCGAAATACTTTTCAATTTCCACATAGGTCTTCCTAGGCACA
CCGATCTTGAACAATATTCCGCTGTATAGCCCCTTCATCAAGAGTTTAAA
GGGCCTCGTCAGTGCTTGCCGAACTGAGGCGCATAGAGCACAGCAAGAGC
ATTTCTGCCAATGCCGCCAAAAACTTCCCCACTTTTCGGGCCGGTGACTC
GATCGAAGTGAAGATGGTGACACATCTCTCCTCTACCGAGATAGACACCT
ATCGTGGAGTTGTCCTCGGCATGCGTCGGAACGGTGCTGATTCGCGCTTT
TTACTTGCTGATATGGCTATAAGAGCTTTGAAATGGCCGTGGATGCGATT
TACGTCCTCAGCTCTTCTCCCAAAGCCATTGCTAGGTGCTGGTGCAAGCA
GGAAGAGTAGCGGATGCCTTGCAGCCTTGACTCCTTCACGACAAGCATTT
TCTTCTAATGGTCTATCCGCCGACGCACCTGCATCAGGCCCTTCTGAAAC
TACTAAATATTCGAAACACAAGACTCCACGCAAGAG
back to top
Synonyms
Publications