EWM26783.1, cds3877 (CDS) Nannochloropsis gaditana

Overview
NameEWM26783.1
Unique Namecds3877
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:325323..325546 -
Alignment locationCM002462.1:324894..325104 -
Alignment locationCM002462.1:324468..324533 -
Alignment locationCM002462.1:324154..324261 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26783.1
Product50s ribosomal protein l19
Orig transcript idgnl|cribi|Naga_100018g17.2763.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:325323..325546 -
CM002462.1supercontigCM002462.1:324894..325104 -
CM002462.1supercontigCM002462.1:324468..324533 -
CM002462.1supercontigCM002462.1:324154..324261 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR001857Ribosomal_L19
Homology
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|585108874|gb|EWM26783.1| (50s ribosomal protein l19 [Nannochloropsis gaditana])

HSP 1 Score: 410.994 bits (1055), Expect = 3.824e-145
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST 202
            MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST
Sbjct:    1 MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST 202          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|566031843|gb|ETI54754.1| (ribosomal protein L19 [Phytophthora parasitica P1569] >gi|567957062|gb|ETK82670.1| ribosomal protein L19 [Phytophthora parasitica] >gi|567997917|gb|ETL47996.1| ribosomal protein L19 [Phytophthora parasitica] >gi|568015109|gb|ETL89286.1| ribosomal protein L19 [Phytophthora parasitica] >gi|568045397|gb|ETM42553.1| ribosomal protein L19 [Phytophthora parasitica] >gi|570323319|gb|ETO71267.1| ribosomal protein L19 [Phytophthora parasitica P1976] >gi|570947116|gb|ETP12373.1| ribosomal protein L19 [Phytophthora parasitica CJ01A1] >gi|570979578|gb|ETP40497.1| ribosomal protein L19 [Phytophthora parasitica P10297] >gi|970633047|gb|KUF78930.1| 50S ribosomal protein L19 [Phytophthora nicotianae] >gi|970640777|gb|KUF83182.1| 50S ribosomal protein L19 [Phytophthora nicotianae])

HSP 1 Score: 104.375 bits (259), Expect = 1.245e-24
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   53 ADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
            A +PA+  +E  K +K K P KRA+S+L +L   E      A+  K+   F+ GDS+EV+ +   +   +   +GVVL  R  G  S F++ +   G      I L+SP ++S+KVLQ A+IHKGKKRVRR+KL+YL EK
Sbjct:   35 ATSPATPAAEQPKRTKLKIPTKRAASLLQQL---EAEAVAKASEGKDIDNFKPGDSVEVQYLLSRTGGRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKVLQEAFIHKGKKRVRRAKLFYLREK 171          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|953492495|emb|CEG45083.1| (ribosomal protein l19 [Plasmopara halstedii])

HSP 1 Score: 103.605 bits (257), Expect = 2.294e-24
Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 0
Query:   23 LLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
            ++GA   R SS     LT S   FS+   +++ PA+   +  K +K K P KRA+S+L +L   E      A+  KN   F  GDS+EV  +   +S+ +   +GVVL  R  G  S F++ +   G      I L SP ++S+K+LQ ++IHKGKKRVRR+KLYYL EK
Sbjct:   12 VVGATGPRHSS----FLTASASFFSTKAPNSEMPAT---DNPKRTKLKIPTKRAASLLQQL---EAEAVAKASEGKNIVDFNPGDSVEVHYLLSRTSSRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGFEQKIFLCSPLLQSVKLLQKSFIHKGKKRVRRAKLYYLREK 171          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|675199373|ref|XP_008908571.1| (ribosomal protein L19 [Phytophthora parasitica INRA-310] >gi|568091245|gb|ETN06069.1| ribosomal protein L19 [Phytophthora parasitica INRA-310])

HSP 1 Score: 103.219 bits (256), Expect = 3.063e-24
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   53 ADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
            A +PA+  +E  K +K K P KRA+S+L +L   E      A+  K+   F+ GDS+EV+ +   +   +   +GVVL  R  G  S F++ +   G      I L+SP ++S+KVLQ A+IH+GKKRVRR+KL+YL EK
Sbjct:   35 ATSPATPAAEQPKRTKLKIPTKRAASLLQQL---EAEAVAKASEGKDIDNFKPGDSVEVQYLLSRTGGRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKVLQEAFIHRGKKRVRRAKLFYLREK 171          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|1210530128|dbj|GAX11236.1| (hypothetical protein FisN_34Hh044 [Fistulifera solaris])

HSP 1 Score: 99.7525 bits (247), Expect = 7.741e-23
Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = 0
Query:   45 AFSSNGLSADAPA---SGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPT-FRAGDSIEVKM-VTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIS 201
            AFS+N  + +  A    G     +  K K+PRKRAS +L EL+  E  KS  AN    + T FR GD+IE+ +   +    EI+  RGVVLG+ R G D   LL DV  G P+   I L+SP ++S+K+L+  +++KGK++V+R+KLY+L + R+P+   ++
Sbjct:   25 AFSTNLRTPEEMAVLHHGLRPRHRAPKFKSPRKRASKLLQELQG-ELVKSNKANKPDVWGTHFRVGDAIELVIGRENAEKNEIEKIRGVVLGISRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEENFVYKGKRKVKRAKLYFLRD-RNPELTRVT 184          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|1210527908|dbj|GAX13439.1| (hypothetical protein FisN_34Lh044 [Fistulifera solaris])

HSP 1 Score: 97.4413 bits (241), Expect = 6.073e-22
Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 0
Query:   68 KHKTPRKRASSVLAELRRIEHSKSISANAAKNFPT-FRAGDSIEVKM-VTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIS 201
            K K+PRKRAS +L EL+  E  +S  AN    + T FR GD+IE+ +   +    EI+  RGVVLG+ R G D   LL DV  G P+   I L+SP ++S+K+L+  +++KGK++V+R+KLY+L   R+P+   ++
Sbjct:   51 KFKSPRKRASKLLQELQG-EVIESNKANKPDVWGTHFRVGDAIELVIGRENAEKNEIEKIRGVVLGVSRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEQNFVYKGKRKVKRAKLYFL-RDRNPELTRVT 184          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|298706484|emb|CBJ29471.1| (50S ribosomal protein l19-like protein [Ectocarpus siliculosus])

HSP 1 Score: 97.0561 bits (240), Expect = 1.671e-21
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 0
Query:   61 SETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGK---KRVRRSKLYYLWEKRDPKYFSIS 201
             E  +  KH+ P+KRAS +L ELR+ + +           P  + GD+IEV M  +  +T     RGV+L     G DS  LL DV  G P+ ++IPL+SP I+S++V++ A+I++GK   KRVR +++YY+ +  D K + I+
Sbjct:   77 DEKVQRLKHRIPQKRASFLLNELRQEQRNGERC-----ELPDMKIGDAIEVTMYANKKATRTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDL-DQKLYRIT 214          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|301113892|ref|XP_002998716.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112017|gb|EEY70069.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 95.5153 bits (236), Expect = 2.553e-21
Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 0
Query:   65 KYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
            K +K K P KRA+S+L +L   E      A+  K+   F+ GDS+EV+ +   +   +   +GVVL  R  G  S F++ +   G      I L+SP ++S+K LQ A+IHKGKKRVRR+KL+YL EK
Sbjct:   47 KRTKLKIPTKRAASLLQQL---EAEAVAKASEGKDIDNFKPGDSVEVQYLLSRTGGRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKKLQEAFIHKGKKRVRRAKLFYLREK 171          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|695448773|ref|XP_009535068.1| (hypothetical protein PHYSODRAFT_355846 [Phytophthora sojae] >gi|348670385|gb|EGZ10207.1| hypothetical protein PHYSODRAFT_355846 [Phytophthora sojae])

HSP 1 Score: 94.7449 bits (234), Expect = 4.929e-21
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 0
Query:   65 KYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
            K +K K P KRA+S+L +L   E      A   K+   F+ GDS+EV+ +   + + +   +GVVL  R  G  S F++ +   G      I L+SP ++S+KVLQ A+IHKGKKRVRR+KL+YL EK
Sbjct:   46 KRTKLKIPTKRAASLLQQL---EAEAVAKAAEGKDIDNFKPGDSVEVQYLLSRTGSRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKVLQEAFIHKGKKRVRRAKLFYLREK 170          
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|219111353|ref|XP_002177428.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411963|gb|EEC51891.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 91.6633 bits (226), Expect = 7.950e-21
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = 0
Query:  104 RAGDSIEVKMVTH--LSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
            R GD+IE++MV+   + S + D  RGVV+G+ R   D+  LL DV  G PI   +PL+SP ++SLKVL+  +I+KGK++V+R+KLY+L ++
Sbjct:    1 RVGDAIEIEMVSDGGVKSDDTDLIRGVVIGITRRALDTTVLLRDVVFGEPIERRVPLHSPLLRSLKVLEENFIYKGKRKVKRAKLYFLRDR 91          
The following BLAST results are available for this feature:
BLAST of EWM26783.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108874|gb|EWM26783.1|3.824e-145100.0050s ribosomal protein l19 [Nannochloropsis gaditan... [more]
gi|566031843|gb|ETI54754.1|1.245e-2441.43ribosomal protein L19 [Phytophthora parasitica P15... [more]
gi|953492495|emb|CEG45083.1|2.294e-2439.41ribosomal protein l19 [Plasmopara halstedii][more]
gi|675199373|ref|XP_008908571.1|3.063e-2440.71ribosomal protein L19 [Phytophthora parasitica INR... [more]
gi|1210530128|dbj|GAX11236.1|7.741e-2339.51hypothetical protein FisN_34Hh044 [Fistulifera sol... [more]
gi|1210527908|dbj|GAX13439.1|6.073e-2241.91hypothetical protein FisN_34Lh044 [Fistulifera sol... [more]
gi|298706484|emb|CBJ29471.1|1.671e-2137.5050S ribosomal protein l19-like protein [Ectocarpus... [more]
gi|301113892|ref|XP_002998716.1|2.553e-2141.41conserved hypothetical protein [Phytophthora infes... [more]
gi|695448773|ref|XP_009535068.1|4.929e-2142.19hypothetical protein PHYSODRAFT_355846 [Phytophtho... [more]
gi|219111353|ref|XP_002177428.1|7.950e-2146.15predicted protein, partial [Phaeodactylum tricornu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3886rna3886Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications