EWM26783.1, cds3877 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|585108874|gb|EWM26783.1| (50s ribosomal protein l19 [Nannochloropsis gaditana]) HSP 1 Score: 410.994 bits (1055), Expect = 3.824e-145 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST 202
MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST
Sbjct: 1 MAIRALKWPWMRFTSSALLPKPLLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIST 202
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|566031843|gb|ETI54754.1| (ribosomal protein L19 [Phytophthora parasitica P1569] >gi|567957062|gb|ETK82670.1| ribosomal protein L19 [Phytophthora parasitica] >gi|567997917|gb|ETL47996.1| ribosomal protein L19 [Phytophthora parasitica] >gi|568015109|gb|ETL89286.1| ribosomal protein L19 [Phytophthora parasitica] >gi|568045397|gb|ETM42553.1| ribosomal protein L19 [Phytophthora parasitica] >gi|570323319|gb|ETO71267.1| ribosomal protein L19 [Phytophthora parasitica P1976] >gi|570947116|gb|ETP12373.1| ribosomal protein L19 [Phytophthora parasitica CJ01A1] >gi|570979578|gb|ETP40497.1| ribosomal protein L19 [Phytophthora parasitica P10297] >gi|970633047|gb|KUF78930.1| 50S ribosomal protein L19 [Phytophthora nicotianae] >gi|970640777|gb|KUF83182.1| 50S ribosomal protein L19 [Phytophthora nicotianae]) HSP 1 Score: 104.375 bits (259), Expect = 1.245e-24 Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 0
Query: 53 ADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
A +PA+ +E K +K K P KRA+S+L +L E A+ K+ F+ GDS+EV+ + + + +GVVL R G S F++ + G I L+SP ++S+KVLQ A+IHKGKKRVRR+KL+YL EK
Sbjct: 35 ATSPATPAAEQPKRTKLKIPTKRAASLLQQL---EAEAVAKASEGKDIDNFKPGDSVEVQYLLSRTGGRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKVLQEAFIHKGKKRVRRAKLFYLREK 171
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|953492495|emb|CEG45083.1| (ribosomal protein l19 [Plasmopara halstedii]) HSP 1 Score: 103.605 bits (257), Expect = 2.294e-24 Identity = 67/170 (39.41%), Postives = 96/170 (56.47%), Query Frame = 0
Query: 23 LLGAGASRKSSGCLAALTPSRQAFSSNGLSADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
++GA R SS LT S FS+ +++ PA+ + K +K K P KRA+S+L +L E A+ KN F GDS+EV + +S+ + +GVVL R G S F++ + G I L SP ++S+K+LQ ++IHKGKKRVRR+KLYYL EK
Sbjct: 12 VVGATGPRHSS----FLTASASFFSTKAPNSEMPAT---DNPKRTKLKIPTKRAASLLQQL---EAEAVAKASEGKNIVDFNPGDSVEVHYLLSRTSSRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGFEQKIFLCSPLLQSVKLLQKSFIHKGKKRVRRAKLYYLREK 171
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|675199373|ref|XP_008908571.1| (ribosomal protein L19 [Phytophthora parasitica INRA-310] >gi|568091245|gb|ETN06069.1| ribosomal protein L19 [Phytophthora parasitica INRA-310]) HSP 1 Score: 103.219 bits (256), Expect = 3.063e-24 Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 0
Query: 53 ADAPASGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
A +PA+ +E K +K K P KRA+S+L +L E A+ K+ F+ GDS+EV+ + + + +GVVL R G S F++ + G I L+SP ++S+KVLQ A+IH+GKKRVRR+KL+YL EK
Sbjct: 35 ATSPATPAAEQPKRTKLKIPTKRAASLLQQL---EAEAVAKASEGKDIDNFKPGDSVEVQYLLSRTGGRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKVLQEAFIHRGKKRVRRAKLFYLREK 171
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|1210530128|dbj|GAX11236.1| (hypothetical protein FisN_34Hh044 [Fistulifera solaris]) HSP 1 Score: 99.7525 bits (247), Expect = 7.741e-23 Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = 0
Query: 45 AFSSNGLSADAPA---SGPSETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPT-FRAGDSIEVKM-VTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIS 201
AFS+N + + A G + K K+PRKRAS +L EL+ E KS AN + T FR GD+IE+ + + EI+ RGVVLG+ R G D LL DV G P+ I L+SP ++S+K+L+ +++KGK++V+R+KLY+L + R+P+ ++
Sbjct: 25 AFSTNLRTPEEMAVLHHGLRPRHRAPKFKSPRKRASKLLQELQG-ELVKSNKANKPDVWGTHFRVGDAIELVIGRENAEKNEIEKIRGVVLGISRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEENFVYKGKRKVKRAKLYFLRD-RNPELTRVT 184
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|1210527908|dbj|GAX13439.1| (hypothetical protein FisN_34Lh044 [Fistulifera solaris]) HSP 1 Score: 97.4413 bits (241), Expect = 6.073e-22 Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 0
Query: 68 KHKTPRKRASSVLAELRRIEHSKSISANAAKNFPT-FRAGDSIEVKM-VTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEKRDPKYFSIS 201
K K+PRKRAS +L EL+ E +S AN + T FR GD+IE+ + + EI+ RGVVLG+ R G D LL DV G P+ I L+SP ++S+K+L+ +++KGK++V+R+KLY+L R+P+ ++
Sbjct: 51 KFKSPRKRASKLLQELQG-EVIESNKANKPDVWGTHFRVGDAIELVIGRENAEKNEIEKIRGVVLGVSRKGLDHSVLLRDVVFGQPVERRILLHSPLLQSVKLLEQNFVYKGKRKVKRAKLYFL-RDRNPELTRVT 184
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|298706484|emb|CBJ29471.1| (50S ribosomal protein l19-like protein [Ectocarpus siliculosus]) HSP 1 Score: 97.0561 bits (240), Expect = 1.671e-21 Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 0
Query: 61 SETTKYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGK---KRVRRSKLYYLWEKRDPKYFSIS 201
E + KH+ P+KRAS +L ELR+ + + P + GD+IEV M + +T RGV+L G DS LL DV G P+ ++IPL+SP I+S++V++ A+I++GK KRVR +++YY+ + D K + I+
Sbjct: 77 DEKVQRLKHRIPQKRASFLLNELRQEQRNGERC-----ELPDMKIGDAIEVTMYANKKATRTSQVRGVLLRKVNKGIDSSILLRDVINGNPVEHHIPLFSPLIQSVEVMETAFIYQGKLRGKRVRPARIYYIRDL-DQKLYRIT 214
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|301113892|ref|XP_002998716.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112017|gb|EEY70069.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 95.5153 bits (236), Expect = 2.553e-21 Identity = 53/128 (41.41%), Postives = 76/128 (59.38%), Query Frame = 0
Query: 65 KYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
K +K K P KRA+S+L +L E A+ K+ F+ GDS+EV+ + + + +GVVL R G S F++ + G I L+SP ++S+K LQ A+IHKGKKRVRR+KL+YL EK
Sbjct: 47 KRTKLKIPTKRAASLLQQL---EAEAVAKASEGKDIDNFKPGDSVEVQYLLSRTGGRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKKLQEAFIHKGKKRVRRAKLFYLREK 171
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|695448773|ref|XP_009535068.1| (hypothetical protein PHYSODRAFT_355846 [Phytophthora sojae] >gi|348670385|gb|EGZ10207.1| hypothetical protein PHYSODRAFT_355846 [Phytophthora sojae]) HSP 1 Score: 94.7449 bits (234), Expect = 4.929e-21 Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 0
Query: 65 KYSKHKTPRKRASSVLAELRRIEHSKSISANAAKNFPTFRAGDSIEVKMVTHLSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
K +K K P KRA+S+L +L E A K+ F+ GDS+EV+ + + + + +GVVL R G S F++ + G I L+SP ++S+KVLQ A+IHKGKKRVRR+KL+YL EK
Sbjct: 46 KRTKLKIPTKRAASLLQQL---EAEAVAKAAEGKDIDNFKPGDSVEVQYLLSRTGSRVQRVKGVVLARRNRGTGSSFVIRNHIGGYGYEQKIFLHSPLLQSVKVLQEAFIHKGKKRVRRAKLFYLREK 170
BLAST of EWM26783.1 vs. NCBI_GenBank
Match: gi|219111353|ref|XP_002177428.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411963|gb|EEC51891.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 91.6633 bits (226), Expect = 7.950e-21 Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = 0
Query: 104 RAGDSIEVKMVTH--LSSTEIDTYRGVVLGMRRNGADSRFLLADVFLGTPILNNIPLYSPFIKSLKVLQPAYIHKGKKRVRRSKLYYLWEK 192
R GD+IE++MV+ + S + D RGVV+G+ R D+ LL DV G PI +PL+SP ++SLKVL+ +I+KGK++V+R+KLY+L ++
Sbjct: 1 RVGDAIEIEMVSDGGVKSDDTDLIRGVVIGITRRALDTTVLLRDVVFGEPIERRVPLHSPLLRSLKVLEENFIYKGKRKVKRAKLYFLRDR 91 The following BLAST results are available for this feature:
BLAST of EWM26783.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|