rna3881, rna3881 (mRNA) Nannochloropsis gaditana

Overview
Namerna3881
Unique Namerna3881
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length843
Alignment locationCM002462.1:310771..311265 +

Link to JBrowse

Properties
Property NameValue
Productnucleoredoxin-like protein 2
Orig transcript idgnl|cribi|Naga_100018g24.2800.mrna
Orig protein idgnl|cribi|Naga_100018g24.2800
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:310771..311265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g24gene3733Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3881rna3881-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26820.1cds3872Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3881 ID=rna3881|Name=rna3881|organism=Nannochloropsis gaditana|type=mRNA|length=843bp
CGGGCTTTCACCGGGATGGCTAGGCGATCAAATTCTCGCCAAATACTTAA
GTGTATCATCTCCTCCAGAACACAAAAGTAAAGGATGAGTATGTATGGAG
CGGTCCTAAGCGTCATCCAAGCCGTCTTCACCAGCTTTACTGTCTCAAAT
CTTTTCTTAGCATTCCTATTCGTACGCTGCTGTTTTGTGCTCTTGAGGGA
ATGCCGACTTTTCATACTCGCGCGATGCGGACAACATATTACATATTATA
ACGTTCACATCCTCTTTGAGAGAAAATATCAGACCCTGGCTCACGTATGG
GTTTACTGATGAATTGCGGCATTCAAAAAAGGTTATAATGATACTTTTGC
TTCCAGCCTTGTGATTTAACCTCCTACCCCCCCTTCTCGTCAACCAGCAA
ACGATTGTCGCTGTAATATAAGGGATGGGGTTCTGGCCCTTTGCATGGAC
CTGGAAAACGAAGAGTGGCAGTAGAGTTTGGGTGGGCGGCTTCATTGTTG
CTCCCGTGGTACTGGGCACAACTTGGTTCTTTTCTCATCCTCAGCCGGGG
CGTGAACCGCAGCTACCACCTCTCGTTAGACACAGTCAAGAGCACCCGCC
CGTGGAGGATCAAATGAATTCTAGTCCCATGGTCGTTTCTCCACCATCAC
GTGATACATGGGAAAGAACATGATAGGCATCATGTGCAGCAAAAATCACA
AATTCTGCTCGGAAAATCAAAAGTTGGAGAGGAAACGACAGGAGCCACGA
GGGGGAGAGCTGCAATTATCATTTTTTGGGGCATTAGACATAAAAAGTGC
CATAGCTATTTACAGGGTAATCAAATCTACACGCACCGATCAA
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protein sequence of rna3881

>rna3881-protein ID=rna3881-protein|Name=rna3881|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MGSTILKLLRDAELVRVGGAAPFLSSGFDALKGKTLLLYFSASWCPPCRR
FTPVLKEFYEAVATKHPVEVVWVSSDDSQMEWGEYGKIMAAYYAVPFENR
DLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEE
ITRSGIAVLHKWDL
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mRNA from alignment at CM002462.1:310771..311265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3881 ID=rna3881|Name=rna3881|organism=Nannochloropsis gaditana|type=mRNA|length=495bp|location=Sequence derived from alignment at CM002462.1:310771..311265+ (Nannochloropsis gaditana)
ATGGGGTCCACTATCCTGAAGCTTTTGCGTGACGCAGAACTCGTACGTGT
GGGTGGTGCAGCGCCGTTCTTGTCATCGGGCTTTGACGCACTTAAAGGGA
AGACTCTTCTCTTGTACTTTTCGGCAAGCTGGTGCCCGCCCTGCCGCCGC
TTTACGCCCGTTTTGAAAGAATTCTATGAAGCGGTCGCCACAAAGCACCC
AGTAGAGGTGGTATGGGTTTCCTCGGACGACTCGCAAATGGAGTGGGGGG
AATATGGGAAAATTATGGCAGCCTATTACGCGGTACCTTTCGAAAATAGG
GACCTTCGGACGAGACTCAAGCAAGAAGTTGGTGTGTGTGCTAGCAAAGA
GCAGGCCAGCGTTGGCATACAAGAGAGGAAACGTGGCATTCCAACATTAG
CGGTCGTAAAGCCTGACGGAACCCTGCTGACCATAGAAGGCGACGAAGAG
ATAACTCGGAGCGGGATAGCCGTGTTGCATAAGTGGGATTTGTAG
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Coding sequence (CDS) from alignment at CM002462.1:310771..311265+

>rna3881 ID=rna3881|Name=rna3881|organism=Nannochloropsis gaditana|type=CDS|length=495bp|location=Sequence derived from alignment at CM002462.1:310771..311265+ (Nannochloropsis gaditana)
ATGGGGTCCACTATCCTGAAGCTTTTGCGTGACGCAGAACTCGTACGTGT
GGGTGGTGCAGCGCCGTTCTTGTCATCGGGCTTTGACGCACTTAAAGGGA
AGACTCTTCTCTTGTACTTTTCGGCAAGCTGGTGCCCGCCCTGCCGCCGC
TTTACGCCCGTTTTGAAAGAATTCTATGAAGCGGTCGCCACAAAGCACCC
AGTAGAGGTGGTATGGGTTTCCTCGGACGACTCGCAAATGGAGTGGGGGG
AATATGGGAAAATTATGGCAGCCTATTACGCGGTACCTTTCGAAAATAGG
GACCTTCGGACGAGACTCAAGCAAGAAGTTGGTGTGTGTGCTAGCAAAGA
GCAGGCCAGCGTTGGCATACAAGAGAGGAAACGTGGCATTCCAACATTAG
CGGTCGTAAAGCCTGACGGAACCCTGCTGACCATAGAAGGCGACGAAGAG
ATAACTCGGAGCGGGATAGCCGTGTTGCATAAGTGGGATTTGTAG
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Synonyms
Publications