EWM26820.1, cds3872 (CDS) Nannochloropsis gaditana

Overview
NameEWM26820.1
Unique Namecds3872
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:310771..311265 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26820.1
Productnucleoredoxin-like protein 2
Orig transcript idgnl|cribi|Naga_100018g24.2800.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:310771..311265 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|585108911|gb|EWM26820.1| (nucleoredoxin-like protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 337.806 bits (865), Expect = 1.944e-117
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 MGSTILKLLRDAELVRVGGAAPFLSSGFDALKGKTLLLYFSASWCPPCRRFTPVLKEFYEAVATKHPVEVVWVSSDDSQMEWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKWDL 164
            MGSTILKLLRDAELVRVGGAAPFLSSGFDALKGKTLLLYFSASWCPPCRRFTPVLKEFYEAVATKHPVEVVWVSSDDSQMEWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKWDL
Sbjct:    1 MGSTILKLLRDAELVRVGGAAPFLSSGFDALKGKTLLLYFSASWCPPCRRFTPVLKEFYEAVATKHPVEVVWVSSDDSQMEWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKWDL 164          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|1173951962|gb|OQR99727.1| (hypothetical protein ACHHYP_04626 [Achlya hypogyna])

HSP 1 Score: 112.849 bits (281), Expect = 8.086e-29
Identity = 61/160 (38.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query:    5 ILKLLRDAELVRVGGAAPFLSSGFDALKGKTLLLYFSASWCPPCRRFTPVLKEFYEAV-ATKHPVEVVWVSSD-DSQMEWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
            +   L+   LV   GAA  LS+       KTL LYF+A WCP CR F P L EFY  V +  H +++V+V SD  ++ +   +     ++  +PFE+  LR  LK++ GVCA KE+ +VG+ +R  GIP+L VV   G ++ + G ++++ SG A L+ W
Sbjct:    1 MAHFLQGTTLVTAAGAAKQLSA-------KTLALYFAADWCPDCRDFQPKLNEFYSEVNSASHQLDIVFVGSDATAEDQLAHFRDKQGSWLMIPFEDP-LRNELKRKYGVCAGKEKDAVGVVDRVGGIPSLVVVTAAGDVIDLNGADKVSASGAAALNAW 152          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|813150929|ref|XP_012201111.1| (hypothetical protein SPRG_06342 [Saprolegnia parasitica CBS 223.65] >gi|641534338|gb|KDO28291.1| hypothetical protein SPRG_06342 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 112.079 bits (279), Expect = 1.533e-28
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 0
Query:   33 GKTLLLYFSASWCPPCRRFTPVLKEFYEAV-ATKHPVEVVWVSSDDSQM-EWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
             KTL LYF+A WCP CR F P L EFY  V AT H +++V+V SD ++  +   + +    +  +PF +  LR  LK++ GVCA KE+ +VG+ +R  GIP+L VV P+G ++ + G ++++  G A L  W
Sbjct:   22 AKTLALYFAADWCPDCRDFQPTLNEFYRQVNATSHELDIVFVGSDATEADQLAHFREKHGPWLMIPFADP-LRDELKRKYGVCAGKEKEAVGVTDRVGGIPSLVVVSPNGDVIDLHGADKVSADGAAALQAW 152          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|1173959964|gb|OQS06136.1| (hypothetical protein THRCLA_20432 [Thraustotheca clavata])

HSP 1 Score: 109.768 bits (273), Expect = 1.079e-27
Identity = 53/135 (39.26%), Postives = 85/135 (62.96%), Query Frame = 0
Query:   30 ALKGKTLLLYFSASWCPPCRRFTPVLKEFYEAVATK-HPVEVVWVSSDDSQMEWGE-YGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
            +L GK   LYF+A WCP CR F P L  FY+ V  K H  ++++VSSD+++ +  + Y +    +  +PFE+  L+  LK++ GVCA +EQ +VG+QER  GIP++ +V  +G L+ + G ++I   G A + +W
Sbjct:   10 SLSGKVHALYFAADWCPDCRDFQPTLNAFYDKVNEKEHVFDIIFVSSDETEQDQEQHYREKQRPWQVIPFES-PLKNELKRKYGVCAGREQQAVGVQERLGGIPSVVIVAANGDLIDLHGVDKIESLGAAAIQEW 143          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|695369272|ref|XP_009514012.1| (hypothetical protein PHYSODRAFT_283995 [Phytophthora sojae] >gi|348686923|gb|EGZ26737.1| hypothetical protein PHYSODRAFT_283995 [Phytophthora sojae])

HSP 1 Score: 105.145 bits (261), Expect = 9.405e-26
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 0
Query:   33 GKTLLLYFSASWCPPCRRFTPVLKEFYEAVATKHPVEVVWVSSDDS-QMEWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
            GK L LYF+A WCP CR F P L  FY+A   +  ++VV+V SD S + +   +      ++ VPFE  + RT+LK++ GVCA  E   +    RK GIPTL V++PDG ++  +  ++I R GI  L KW
Sbjct:   28 GKVLALYFAADWCPDCRAFQPALNSFYKA--ARDQIDVVFVGSDASAKDQRAHFEDKQGPWWMVPFEG-ETRTQLKRKFGVCAGAEVRVLSPITRKGGIPTLVVIRPDGEVVDFDAADKIERDGIKALAKW 155          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|551636667|ref|XP_005821157.1| (hypothetical protein GUITHDRAFT_119670 [Guillardia theta CCMP2712] >gi|428165175|gb|EKX34177.1| hypothetical protein GUITHDRAFT_119670 [Guillardia theta CCMP2712])

HSP 1 Score: 104.375 bits (259), Expect = 1.319e-25
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 0
Query:   42 ASWCPPCRRFTPVLKEFYEAV--ATKHPVEVVWVSSDDSQMEWGE-YGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
            A WCP CR F P LK FYE V    +   E+V+VSS++S+    E + K    + AVP+    LR  LK++ GVCA KEQA+V +  R+ GIPTL V+K DG+ LTI+G  EI+ SG+     W
Sbjct:   11 AHWCPQCREFDPELKRFYETVNGGGEKRFEIVFVSSEESEAATNETHNKYHGDWLAVPY-GSSLRNELKRKFGVCAGKEQAAVKVNPRRSGIPTLLVLKEDGSELTIDGASEIS-SGVKAFESW 132          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|294868286|ref|XP_002765462.1| (thioredoxin, putative [Perkinsus marinus ATCC 50983] >gi|239865505|gb|EEQ98179.1| thioredoxin, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 104.76 bits (260), Expect = 1.807e-25
Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 0
Query:   31 LKGKTLLLYFSASWCPPCRRFTPVLKEFYEAVATKHP--VEVVWVSSDDSQMEWGEYGKI-MAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGI--QERKRGIPTLAVV-KPDGTLLTIEGDEEITRSGIAVLHKW 162
            LK   + LYF+A WCP CR FTP + +FYE V  K+P  +E++++SSD S+ E   Y +  M  +  VPF ++  R  LK+E GVCA KE   +G+   +RK GIPTL V+ K   T+   +   +I + G A + +W
Sbjct:   28 LKKDIIALYFAAHWCPDCRAFTPTVNKFYEDVKAKNPDKLEIIFISSDKSENEQVAYHQNDMPDWLRVPFNDKRTRAVLKKEYGVCAKKEMEDIGMSDSQRKAGIPTLVVLSKNRRTVKVFDAGADIEKYGDAAVDRW 165          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|294945532|ref|XP_002784727.1| (thioredoxin, putative [Perkinsus marinus ATCC 50983] >gi|239897912|gb|EER16523.1| thioredoxin, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 104.375 bits (259), Expect = 2.342e-25
Identity = 58/138 (42.03%), Postives = 82/138 (59.42%), Query Frame = 0
Query:   31 LKGKTLLLYFSASWCPPCRRFTPVLKEFYEAVATKHP--VEVVWVSSDDSQMEWGEYGKI-MAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGI--QERKRGIPTLAVV-KPDGTLLTIEGDEEITRSGIAVLHKW 162
            LK   + LYF+A WCP C  FTP +K+FYE V  K+P  +E+++VSSD S+ E   Y +  M  +  VPF ++  R  LK+E GVCA KE   +GI   +RK GIPTL V+ K   T+   +   +I + G A + +W
Sbjct:   28 LKKDIVALYFAAHWCPDCIAFTPTVKKFYEDVKAKNPDKLEIIFVSSDKSENEQIAYHRNDMPDWLRVPFNDKRTRATLKKEYGVCAKKEMEDIGISDSQRKAGIPTLVVLSKNRRTVKVFDAGADIEKYGEAAVDRW 165          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|698793508|ref|XP_009829786.1| (hypothetical protein H257_06299 [Aphanomyces astaci] >gi|574115353|gb|ETV80839.1| hypothetical protein H257_06299 [Aphanomyces astaci])

HSP 1 Score: 103.605 bits (257), Expect = 3.280e-25
Identity = 54/134 (40.30%), Postives = 77/134 (57.46%), Query Frame = 0
Query:   33 GKTLLLYFSASWCPPCRRFTPVLKEFYEAV-ATKHPVEVVWVSSD---DSQMEWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
             KTL LYF+A WCP CR F P L +FY  V A  H +++V+VSSD   D Q+    +      + A+PF +  LR  LK++  VCA KE  +VG+ +R  GIPT+ +V   G ++ I+   +I  SG+  L  W
Sbjct:   22 AKTLALYFAADWCPDCRDFQPKLNDFYSKVNAQTHQLDIVFVSSDATEDDQL--AHFRDKQGPWLAIPFHDT-LRDELKRKYQVCAKKEMETVGVTDRVGGIPTVVIVNSSGDVVDIDAASKIESSGVDALAAW 152          
BLAST of EWM26820.1 vs. NCBI_GenBank
Match: gi|695369269|ref|XP_009514011.1| (hypothetical protein PHYSODRAFT_553125 [Phytophthora sojae] >gi|348686922|gb|EGZ26736.1| hypothetical protein PHYSODRAFT_553125 [Phytophthora sojae])

HSP 1 Score: 103.219 bits (256), Expect = 5.683e-25
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 0
Query:    8 LLRDAELVRVGGAAPFLSSGFDALKGKTLLLYFSASWCPPCRRFTPVLKEFY-EAVATKHPVEVVWVSSDDSQM-EWGEYGKIMAAYYAVPFENRDLRTRLKQEVGVCASKEQASVGIQERKRGIPTLAVVKPDGTLLTIEGDEEITRSGIAVLHKW 162
            LL   +LV   G       G D  +   L LYF+A+WCP CR F P L +FY +A A+K  ++VV++SSD S+  +   +      ++ VP  + ++R  L+++ G+   K+ A VG+  R  GIP L +++PDG +L  +G +++   GI  L  W
Sbjct:    5 LLHGTKLVNAKGETI---DGADVGQSGLLALYFAANWCPDCRAFQPKLNDFYAQANASKQQLDVVFLSSDMSEEDQQAHFSTKHGDWWMVP-RDAEIRNELRRKYGIRNGKDDAEVGVTHRNSGIPALVIIRPDGEVLDFQGAQQVENDGIKALANW 157          
The following BLAST results are available for this feature:
BLAST of EWM26820.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108911|gb|EWM26820.1|1.944e-117100.00nucleoredoxin-like protein 2 [Nannochloropsis gadi... [more]
gi|1173951962|gb|OQR99727.1|8.086e-2938.13hypothetical protein ACHHYP_04626 [Achlya hypogyna... [more]
gi|813150929|ref|XP_012201111.1|1.533e-2840.91hypothetical protein SPRG_06342 [Saprolegnia paras... [more]
gi|1173959964|gb|OQS06136.1|1.079e-2739.26hypothetical protein THRCLA_20432 [Thraustotheca c... [more]
gi|695369272|ref|XP_009514012.1|9.405e-2641.98hypothetical protein PHYSODRAFT_283995 [Phytophtho... [more]
gi|551636667|ref|XP_005821157.1|1.319e-2545.97hypothetical protein GUITHDRAFT_119670 [Guillardia... [more]
gi|294868286|ref|XP_002765462.1|1.807e-2540.58thioredoxin, putative [Perkinsus marinus ATCC 5098... [more]
gi|294945532|ref|XP_002784727.1|2.342e-2542.03thioredoxin, putative [Perkinsus marinus ATCC 5098... [more]
gi|698793508|ref|XP_009829786.1|3.280e-2540.30hypothetical protein H257_06299 [Aphanomyces astac... [more]
gi|695369269|ref|XP_009514011.1|5.683e-2534.39hypothetical protein PHYSODRAFT_553125 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3881rna3881Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications