rna3870, rna3870 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3870
Unique Name	rna3870
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1330
Alignment location	CM002462.1:284279..285294 +

Link to JBrowse

Properties


Property Name	Value
Product	dynein light chain cytoplasmic
Orig transcript id	gnl\|cribi\|Naga_100018g36.2779.mrna
Orig protein id	gnl\|cribi\|Naga_100018g36.2779
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:284279..285294 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g36	gene3723	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3870	rna3870-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26799.1	cds3861	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:284279..285294+
coding sequence from alignment at CM002462.1:284279..285294+

mRNA sequence

>rna3870 ID=rna3870|Name=rna3870|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp
ACCGTGATGGATGGCAACGCAAGTACCCGGCATCCCCCTCAGATAAATGT
CTTGGAACTAATTTCCCCAACGCATTGAAACATCCTCGTACCCATCGCGT
CGGGTCCATGCATATTTATAACAGGAGGAGGGAAGATGAGCAGGAGAGCG
TCGCGGGTAAAACGCGCAGGGATGCGGGATGGCATCCCCTCTCTCTCAAA
CCTGGTACTGCTCTGGCTCTTCCTCTTCACTGCCTTTACCAGAAGCGAAT
CCCACAGCATCAGCAGCAATAGATGTATTCTTAAATCGAATAAAGCTATT
AGAGCAAGATCAGTACTGCTGAGAAGAAAAGAGGAGACCTTCCGAGTCCT
GCATCCACAATTACCTTTGATCACCCTTTTGGCTCAGAAGCGAGGAGGGG
CTTTGCAGTCATCCAGCCTGCTTGGACGCATCATGCGCGCATGGCGGGGC
AGTGCCAAGCGTGGTGGTAGTATACATGGTCGAATTAAGCGTTTTCTTGG
GCTTTTATGGAATGCAGCAGGTTCCAGCGCGGGCCACGACGTAAAGAGGA
GTACAATTCGCAGTGGGAGTCTTGGAGGGGTCGGTGGCGGAAGATTGGGT
GGGAATCGGATGCAAAAGCATTTGGGGAAAGAATTCCGGCGAGGAAACGC
CAATTTTCGTGTCCAAAAGGAGCTGCGCGAATGGCTGGCGAATCCCACGG
AAAATCTGCAGGTGGCCGTGGGGGACAACATTCGGGTATGGGTGGTGACG
TTGACGGGTGCGAAAGGGACCATCTTTGCGGGGGAGAAGTACAAACTTAA
GTTCACTTTCCCCATGGACTACCCTAGCAAGCCCCCCTCGGTATACTTCT
TGCAACCCCCGCCACGGCATGAACATGTCTACACAAACGGGGACATCTGC
TTGAATTTGCTGGGGAGGGACTGGCGGCCGAACATGACAGCCTCCATGCT
GGCTCTGTCCATCCTGTCCATGCTCTCTTCGGCGAGGGAGAAGAAGATCC
CGCAGGACAACCACGTGCACGCCGACAACCCTCCGGGGAAGGAGCAGGCC
AACTGGTTATACCACGACGACAGGTGTTGAGGAGTCTTTGGGTGCTTTCG
TTTGGGCCGAAAACCAAACAAATGGTGGCGGTGGAAAGGCAGGGAGGAAC
AAGGCAAGCCACGCCGGCCCACCGTGTAAAAATCAAAGAAACAAGAATGC
GGAGACTCAAGTCGCCCTCACTCCAGCCCTTGTGCGGTCAGGAACTCCTT
GTGTCATTTGTTTTGGAGCCGACTGTCCAGCTTTTGCCATTCTTACGCCC
GCCCACACGGCCCTTACTCCGGGCTTCCCA

protein sequence of rna3870

>rna3870-protein ID=rna3870-protein|Name=rna3870|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MGGEVLVLNGRTHKAASFLLNFGLSFFHARFQELALKKLLLIQTNPHAPL
LRYIRRSLLAVKTCVLTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADM
SEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFG
SYVTHETKHFIYFYLGQVAILLFKSGYRLNYVRWNRFNVQKEGTAGHFAA
TGLRGDRSGKIVGLYLKCAHPGKKMEPRTVGVRTLLACYRKPRGVRGVHH
VASEAVGIAPRFGFKKLTYDPRNK

mRNA from alignment at CM002462.1:284279..285294+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3870 ID=rna3870|Name=rna3870|organism=Nannochloropsis gaditana|type=mRNA|length=1016bp|location=Sequence derived from alignment at CM002462.1:284279..285294+ (Nannochloropsis gaditana)
ATGGGAGGTGAAGTTCTTGTTCTAAATGGAAGGACGCATAAAGCAGCCTC
ATTCTTGCTGAATTTTGGGTTGTCCTTTTTCCATGCCCGATTTCAAGAAC
TGGCACTCAAAAAGCTTCTACTCATACAGACCAACCCACATGCCCCTCTC
CTAAGGTACATACGCAGATCCCTTTTGGCCGTAAAGACGTGCGTTTTGAC
AACTGCAGAACGTGGACACAGGCCTACTAGCTTGCTGCACCCTTTTTCTC
CGGCtggttcctcctccctcttgtgtTTGAGTGCTCGAAACGTTCCCTTA
AGAAGCCATGGCTGAACGCAAAGCAGTCATCAAGAATGCCGATATGTCGG
AAGATATGCAACAAGATGCGGTAGATTGTGCGTCGCAGGCTTTGGATCAA
TTTAACATCGAGAAGGACATCGCAGCGTACGTCAAAAAGGAGTTTGACAA
GAAATATAACCCGACATGGCATTGCATCGTGGGCAGAAATTTCGGATCCT
ACGTGACACATGAGACAAAACATTTCATATATTTCTACCTGGGGCAAGTG
GCTATTCTCCTGTTCAAGTCAGGCTAGTCAGGAATTTTTACATGGGAGCA
ACAAACTAATAAGGCGAATTCACCTGATAATTTGCGTGTACGATAGGCTC
AGATTAAAAAAGTCGTTTGAATTATGTCAGATGGAATCGTTTTAATGTAC
AGAAGGAGGGCACAGCAGGCCATTTTGCGGCAACGGGTCTACGAGGCGAC
CGCTCGGGGAAGATAGTTGGGCTTTATTTAAAGTGTGCTCATCCcggaaa
gaaaatggaacCGAGGACAGTCGGAGTAAGAACATTGCTAGCTTGTTATC
GGAAACCCGTCTAGATTAATGGGAAAGGCATGGGCGGGACGAGCCCGTGC
TTGGATGTGGACGGCAGAGAGGGGTGAGAGGCGTGCATCATGTTGCATCC
GAGGCGGTAGGCATTGCACCCCGCTTTGGTTTCAAGAAGTTGACTTATGA
CCCGCGAAACAAATAG

Coding sequence (CDS) from alignment at CM002462.1:284279..285294+

>rna3870 ID=rna3870|Name=rna3870|organism=Nannochloropsis gaditana|type=CDS|length=3300bp|location=Sequence derived from alignment at CM002462.1:284279..285294+ (Nannochloropsis gaditana)
ATGGGAGGTGAAGTTCTTGTTCTAAATGGAAGGACGCATAAAGCAGCCTC
ATTCTTGCTGAATTTTGGGTTGTCCTTTTTCCATGCCCGATTTCAAGAAC
TGGCACTCAAAAAGCTTCTACTCATACAGACCAACCCACATGCCCCTCTC
CTAAGGTACATACGCAGATCCCTTTTGGCCGTAAAGACGTGCGTTTTGAC
AACTGCAGAACGTGGACACAGGCCTACTAGCTTGCTGCACCCTTTTTCTC
CGGCtgAAGCCATGGCTGAACGCAAAGCAGTCATCAAGAATGCCGATATG
TCGGAAGATATGCAACAAGATGCGGTAGATTGTGCGTCGCAGGCTTTGGA
TCAATTTAACATCGAGAAGGACATCGCAGCGTACGTCAAAAAGGAGTTTG
ACAAGAAATATAACCCGACATGGCATTGCATCGTGGGCAGAAATTTCGGA
TCCTACGTGACACATGAGACAAAACATTTCATATATTTCTACCTGGGGCA
AGTGGCTATTCTCCTGTTCAAGTCAGGCTATCGTTTGAATTATGTCAGAT
GGAATCGTTTTAATGTACAGAAGGAGGGCACAGCAGGCCATTTTGCGGCA
ACGGGTCTACGAGGCGACCGCTCGGGGAAGATAGTTGGGCTTTATTTAAA
GTGTGCTCATCCcggaaagaaaatggaacCGAGGACAGTCGGAGTAAGAA
CATTGCTAGCTTGTTATCGGAAACCCAGAGGGGTGAGAGGCGTGCATCAT
GTTGCATCCGAGGCGGTAGGCATTGCACCCCGCTTTGGTTTCAAGAAGTT
GACTTATGACCCGCGAAACAAATAGATGGGAGGTGAAGTTCTTGTTCTAA
ATGGAAGGACGCATAAAGCAGCCTCATTCTTGCTGAATTTTGGGTTGTCC
TTTTTCCATGCCCGATTTCAAGAACTGGCACTCAAAAAGCTTCTACTCAT
ACAGACCAACCCACATGCCCCTCTCCTAAGGTACATACGCAGATCCCTTT
TGGCCGTAAAGACGTGCGTTTTGACAACTGCAGAACGTGGACACAGGCCT
ACTAGCTTGCTGCACCCTTTTTCTCCGGCtgAAGCCATGGCTGAACGCAA
AGCAGTCATCAAGAATGCCGATATGTCGGAAGATATGCAACAAGATGCGG
TAGATTGTGCGTCGCAGGCTTTGGATCAATTTAACATCGAGAAGGACATC
GCAGCGTACGTCAAAAAGGAGTTTGACAAGAAATATAACCCGACATGGCA
TTGCATCGTGGGCAGAAATTTCGGATCCTACGTGACACATGAGACAAAAC
ATTTCATATATTTCTACCTGGGGCAAGTGGCTATTCTCCTGTTCAAGTCA
GGCTATCGTTTGAATTATGTCAGATGGAATCGTTTTAATGTACAGAAGGA
GGGCACAGCAGGCCATTTTGCGGCAACGGGTCTACGAGGCGACCGCTCGG
GGAAGATAGTTGGGCTTTATTTAAAGTGTGCTCATCCcggaaagaaaatg
gaacCGAGGACAGTCGGAGTAAGAACATTGCTAGCTTGTTATCGGAAACC
CAGAGGGGTGAGAGGCGTGCATCATGTTGCATCCGAGGCGGTAGGCATTG
CACCCCGCTTTGGTTTCAAGAAGTTGACTTATGACCCGCGAAACAAATAG
ATGGGAGGTGAAGTTCTTGTTCTAAATGGAAGGACGCATAAAGCAGCCTC
ATTCTTGCTGAATTTTGGGTTGTCCTTTTTCCATGCCCGATTTCAAGAAC
TGGCACTCAAAAAGCTTCTACTCATACAGACCAACCCACATGCCCCTCTC
CTAAGGTACATACGCAGATCCCTTTTGGCCGTAAAGACGTGCGTTTTGAC
AACTGCAGAACGTGGACACAGGCCTACTAGCTTGCTGCACCCTTTTTCTC
CGGCtgAAGCCATGGCTGAACGCAAAGCAGTCATCAAGAATGCCGATATG
TCGGAAGATATGCAACAAGATGCGGTAGATTGTGCGTCGCAGGCTTTGGA
TCAATTTAACATCGAGAAGGACATCGCAGCGTACGTCAAAAAGGAGTTTG
ACAAGAAATATAACCCGACATGGCATTGCATCGTGGGCAGAAATTTCGGA
TCCTACGTGACACATGAGACAAAACATTTCATATATTTCTACCTGGGGCA
AGTGGCTATTCTCCTGTTCAAGTCAGGCTATCGTTTGAATTATGTCAGAT
GGAATCGTTTTAATGTACAGAAGGAGGGCACAGCAGGCCATTTTGCGGCA
ACGGGTCTACGAGGCGACCGCTCGGGGAAGATAGTTGGGCTTTATTTAAA
GTGTGCTCATCCcggaaagaaaatggaacCGAGGACAGTCGGAGTAAGAA
CATTGCTAGCTTGTTATCGGAAACCCAGAGGGGTGAGAGGCGTGCATCAT
GTTGCATCCGAGGCGGTAGGCATTGCACCCCGCTTTGGTTTCAAGAAGTT
GACTTATGACCCGCGAAACAAATAGATGGGAGGTGAAGTTCTTGTTCTAA
ATGGAAGGACGCATAAAGCAGCCTCATTCTTGCTGAATTTTGGGTTGTCC
TTTTTCCATGCCCGATTTCAAGAACTGGCACTCAAAAAGCTTCTACTCAT
ACAGACCAACCCACATGCCCCTCTCCTAAGGTACATACGCAGATCCCTTT
TGGCCGTAAAGACGTGCGTTTTGACAACTGCAGAACGTGGACACAGGCCT
ACTAGCTTGCTGCACCCTTTTTCTCCGGCtgAAGCCATGGCTGAACGCAA
AGCAGTCATCAAGAATGCCGATATGTCGGAAGATATGCAACAAGATGCGG
TAGATTGTGCGTCGCAGGCTTTGGATCAATTTAACATCGAGAAGGACATC
GCAGCGTACGTCAAAAAGGAGTTTGACAAGAAATATAACCCGACATGGCA
TTGCATCGTGGGCAGAAATTTCGGATCCTACGTGACACATGAGACAAAAC
ATTTCATATATTTCTACCTGGGGCAAGTGGCTATTCTCCTGTTCAAGTCA
GGCTATCGTTTGAATTATGTCAGATGGAATCGTTTTAATGTACAGAAGGA
GGGCACAGCAGGCCATTTTGCGGCAACGGGTCTACGAGGCGACCGCTCGG
GGAAGATAGTTGGGCTTTATTTAAAGTGTGCTCATCCcggaaagaaaatg
gaacCGAGGACAGTCGGAGTAAGAACATTGCTAGCTTGTTATCGGAAACC
CAGAGGGGTGAGAGGCGTGCATCATGTTGCATCCGAGGCGGTAGGCATTG
CACCCCGCTTTGGTTTCAAGAAGTTGACTTATGACCCGCGAAACAAATAG

Synonyms

Publications