EWM26799.1, cds3861 (CDS) Nannochloropsis gaditana

Overview
NameEWM26799.1
Unique Namecds3861
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:284279..284534 +
Alignment locationCM002462.1:284581..284854 +
Alignment locationCM002462.1:284941..285136 +
Alignment locationCM002462.1:285196..285294 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26799.1
Productdynein light chain cytoplasmic
Orig transcript idgnl|cribi|Naga_100018g36.2779.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:284279..284534 +
CM002462.1supercontigCM002462.1:284581..284854 +
CM002462.1supercontigCM002462.1:284941..285136 +
CM002462.1supercontigCM002462.1:285196..285294 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0065009regulation of molecular function
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005875microtubule associated complex
Vocabulary: INTERPRO
TermDefinition
IPR019763Dynein_light_1/2_CS
IPR001372Dynein_light_chain_typ-1/2
Homology
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|585108890|gb|EWM26799.1| (dynein light chain cytoplasmic [Nannochloropsis gaditana])

HSP 1 Score: 572.007 bits (1473), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
Query:    1 MGGEVLVLNGRTHKAASFLLNFGLSFFHARFQELALKKLLLIQTNPHAPLLRYIRRSLLAVKTCVLTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSGYRLNYVRWNRFNVQKEGTAGHFAATGLRGDRSGKIVGLYLKCAHPGKKMEPRTVGVRTLLACYRKPRGVRGVHHVASEAVGIAPRFGFKKLTYDPRNK 274
            MGGEVLVLNGRTHKAASFLLNFGLSFFHARFQELALKKLLLIQTNPHAPLLRYIRRSLLAVKTCVLTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSGYRLNYVRWNRFNVQKEGTAGHFAATGLRGDRSGKIVGLYLKCAHPGKKMEPRTVGVRTLLACYRKPRGVRGVHHVASEAVGIAPRFGFKKLTYDPRNK
Sbjct:    1 MGGEVLVLNGRTHKAASFLLNFGLSFFHARFQELALKKLLLIQTNPHAPLLRYIRRSLLAVKTCVLTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSGYRLNYVRWNRFNVQKEGTAGHFAATGLRGDRSGKIVGLYLKCAHPGKKMEPRTVGVRTLLACYRKPRGVRGVHHVASEAVGIAPRFGFKKLTYDPRNK 274          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|530618359|ref|XP_005298897.1| (PREDICTED: dynein light chain 2, cytoplasmic isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 191.43 bits (485), Expect = 4.751e-58
Identity = 89/133 (66.92%), Postives = 105/133 (78.95%), Query Frame = 0
Query:   44 TNPHAPLLRYIRRSLLAVKTCVLTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            + P A +  Y + +  +  T  + +  R  R  S+     P   M++RKAVIKNADMSEDMQQDAVDCA+QA++++NIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   19 STPKAQVTPYQKSANASEATLTVRSVLREKRGASVQEAVWPRFTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 151          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|1130259689|ref|XP_019769204.1| (PREDICTED: dynein light chain 1, cytoplasmic isoform X1 [Dendroctonus ponderosae] >gi|478251404|gb|ENN71870.1| hypothetical protein YQE_11485, partial [Dendroctonus ponderosae])

HSP 1 Score: 187.578 bits (475), Expect = 5.920e-57
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = 0
Query:   66 LTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            ++  ++   P   L+  S  E M +RKAVIKNADMSEDMQQDAVDCA+QA++++NIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:   17 ISAYKKTTHPQQTLNSPSKVEKMTDRKAVIKNADMSEDMQQDAVDCATQAIEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 127          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|546685535|gb|ERL95022.1| (hypothetical protein D910_12292 [Dendroctonus ponderosae])

HSP 1 Score: 187.578 bits (475), Expect = 6.056e-57
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = 0
Query:   66 LTTAERGHRPTSLLHPFSPAEAMAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            ++  ++   P   L+  S  E M +RKAVIKNADMSEDMQQDAVDCA+QA++++NIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:   15 ISAYKKTTHPQQTLNSPSKVEKMTDRKAVIKNADMSEDMQQDAVDCATQAIEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 125          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|410923012|ref|XP_003974976.1| (PREDICTED: dynein light chain LC6, flagellar outer arm [Takifugu rubripes] >gi|410923018|ref|XP_003974979.1| PREDICTED: dynein light chain LC6, flagellar outer arm [Takifugu rubripes])

HSP 1 Score: 186.037 bits (471), Expect = 8.355e-57
Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 0
Query:   88 MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            M+ERKAVIKNADMSEDMQQDAV+CA+QAL++FNIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVECATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|675879313|ref|XP_009025211.1| (hypothetical protein HELRODRAFT_68300 [Helobdella robusta] >gi|555693376|gb|ESN96608.1| hypothetical protein HELRODRAFT_68300 [Helobdella robusta])

HSP 1 Score: 186.037 bits (471), Expect = 9.838e-57
Identity = 82/89 (92.13%), Postives = 89/89 (100.00%), Query Frame = 0
Query:   88 MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            M++RKAVIKNADMSEDMQQDAVDCA+QAL+++NIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|646714599|gb|KDR18512.1| (Dynein light chain 1, cytoplasmic [Zootermopsis nevadensis])

HSP 1 Score: 185.652 bits (470), Expect = 1.264e-56
Identity = 82/89 (92.13%), Postives = 89/89 (100.00%), Query Frame = 0
Query:   88 MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            M+ERKAVIKNADMSEDMQQDAVDCA+QAL+++NIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|1040305915|gb|OBS83654.1| (hypothetical protein A6R68_22369, partial [Neotoma lepida])

HSP 1 Score: 185.652 bits (470), Expect = 1.301e-56
Identity = 81/89 (91.01%), Postives = 89/89 (100.00%), Query Frame = 0
Query:   88 MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            M++RKAVIKNADMSEDMQQDAVDCA+QA++++NIEKDIAAY+KKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|1191040571|ref|XP_020897666.1| (dynein light chain 2, cytoplasmic [Exaiptasia pallida] >gi|999976821|gb|KXJ15995.1| Dynein light chain 2, cytoplasmic [Exaiptasia pallida])

HSP 1 Score: 185.652 bits (470), Expect = 1.306e-56
Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 0
Query:   88 MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            M+ERKAVIKNADMSEDMQQDAV+CA+QA+++FNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVECATQAMEKFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of EWM26799.1 vs. NCBI_GenBank
Match: gi|374093227|ref|NP_001243365.1| (dynein light chain [Aplysia californica] >gi|871226224|ref|XP_012936771.1| PREDICTED: dynein light chain isoform X1 [Aplysia californica] >gi|908483543|ref|XP_013092808.1| PREDICTED: dynein light chain 2, cytoplasmic [Biomphalaria glabrata] >gi|322812855|gb|ADX20590.1| dynein light chain [Aplysia californica])

HSP 1 Score: 185.267 bits (469), Expect = 1.571e-56
Identity = 82/89 (92.13%), Postives = 89/89 (100.00%), Query Frame = 0
Query:   88 MAERKAVIKNADMSEDMQQDAVDCASQALDQFNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 176
            M+ERKAVIKNADMSEDMQQDAVDCA+QAL+++NIEKDIAA++KKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
The following BLAST results are available for this feature:
BLAST of EWM26799.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108890|gb|EWM26799.1|0.000e+0100.00dynein light chain cytoplasmic [Nannochloropsis ga... [more]
gi|530618359|ref|XP_005298897.1|4.751e-5866.92PREDICTED: dynein light chain 2, cytoplasmic isofo... [more]
gi|1130259689|ref|XP_019769204.1|5.920e-5775.68PREDICTED: dynein light chain 1, cytoplasmic isofo... [more]
gi|546685535|gb|ERL95022.1|6.056e-5775.68hypothetical protein D910_12292 [Dendroctonus pond... [more]
gi|410923012|ref|XP_003974976.1|8.355e-5793.26PREDICTED: dynein light chain LC6, flagellar outer... [more]
gi|675879313|ref|XP_009025211.1|9.838e-5792.13hypothetical protein HELRODRAFT_68300 [Helobdella ... [more]
gi|646714599|gb|KDR18512.1|1.264e-5692.13Dynein light chain 1, cytoplasmic [Zootermopsis ne... [more]
gi|1040305915|gb|OBS83654.1|1.301e-5691.01hypothetical protein A6R68_22369, partial [Neotoma... [more]
gi|1191040571|ref|XP_020897666.1|1.306e-5693.26dynein light chain 2, cytoplasmic [Exaiptasia pall... [more]
gi|374093227|ref|NP_001243365.1|1.571e-5692.13dynein light chain [Aplysia californica] >gi|87122... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3870rna3870Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications