rna387, rna387 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna387
Unique Name	rna387
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2760
Alignment location	CM002455.1:950522..952090 +

Link to JBrowse

Properties


Property Name	Value
Product	tld family protein
Orig transcript id	gnl\|cribi\|Naga_100003g98.1819.mrna
Orig protein id	gnl\|cribi\|Naga_100003g98.1819
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:950522..952090 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g98	gene373	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna387	rna387-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30302.1	cds387	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:950522..952090+
coding sequence from alignment at CM002455.1:950522..952090+

mRNA sequence

>rna387 ID=rna387|Name=rna387|organism=Nannochloropsis gaditana|type=mRNA|length=2760bp
ATGCTTCTCGTTCGCGTGAAGGCAGAGTCGTCGGTGTCGGATTTTGACGC
AGATAGCGCAAGGAGGAGTCCGCCTTTCGTTGCGGAGCCTGGTTTGTCAC
TTCGGATCAATTGTGCGAAAGCAGCAGACAAGTTCGGAGATGCTCTAGCG
CAACATACCGAAAGCCTCAAAAGTACTAATTCTGCGTCATTTGTAATTGA
CGCGGAAGGTATCATACTTTCGCGACAAGTACCAATGATGGAGATGCCAA
CCAACCGCAGCGGCCCTGGGACGGACTCGGGAGAGAAGTGCCCAAATCCT
CCCACGGTTGGTGCACTTGTCACGACTACGCTTTCGCCCAAAAGTGAATC
TCCTAAGAGAGTTGCTGTTCCCACGTTAGGAGCGCCCGTGGCGGCTCCAC
CGGCGTCCGCCGTGGCCGTGGCAGCAAGGGGGCACGGATCCTCCCTGCAG
AATGGGCTCCCAGCCCGCAACGGGGACGGTGGCAGCTCTTTGACGCCAAC
TTCTGGCCCAAGAGAATTTCTTCAAGTGGCGAGTAAACCGCCTGGCACGG
AGATGCCTGCTCTAGACGCGTCAACAAGTGGATTGATACATAAGCCGGCG
AGTAGCGACGCCGCCACGGCTCTCTCACAGCACCACGATGCGTTGATACA
GCGAGAGCTGAATGCGATCATTGGTCAAAAGCGGGAACACAGGGACCGCA
GTGAAGAGTCGACTGTGCTTCTTCCGTCCACCTCTCCGATCTCGGTTCCC
GTACCAAGACACCAATCGAGCGCACGACCCGGGCCAGGCCCCGCCTCGCA
TGCCCTCCCCGCCTCGCCCCCCGCACAAGCAGGCTCAAACGCCAGAGGAA
GCGGGCAGACGGTCTCGAATAGGTCGCCTCCATCCGCGAACGCGCAAGCC
CTTATGCCTCCTACGCGTCACTCGACAAGGGGGGCCACCGCCGCAGCGGC
GGCTGGTATTAGCAAGTCCATCGAAGAGGCCTGCCATGCCGCCGCCCTAG
AGGACGGCGTGTTGAGCTCGAAGGGGGGAGGCGCGCTGAATGCTGGATAC
GGGAATGCTAAGCAAGGTAGCGTGGTTAGCCCGGGCGAGACAAGCGCGCT
GACAAGCGCTAATAAAGCTGGCAAGGTCAAGAACGGTCTGCGACGAGGGA
AGTGGACGCCGGAGGAAGAGGCTTACGCGAACCGTTTGATTGTCGAGTTC
AAATCTGGATTGTTACCGCTCACTGATGGAACAACGCTACGGACATTTCT
GTCAAAACTTTTGAATTGCGATCCCATGCGTATCTCCAAGAAATTCGTGG
GGCAAAATTGTATCGGGAAGCAAGTTTTTCGACGCCGGCAGCAGGCGGAC
TTGGATCGCCTATCCACGGACGAGATTGAGCGCAGTCGACAAGAGCTAGC
GGAGCTGGAGCGCCGTTTTTTAGAGCGCGTTGCTCAAACAAACCGTTGCA
AAAATTCGGTTGCAGGCTCCAAGCACGGTAAAGACAGCGCCGCGGGGCAA
GTGGCTCCTGAGGTGCCACGTCGGCAACAGGAGTACCTTGGTCCTGACGG
CCGGATTGTTGGGAACCCCGTCCTTCCGCCTTGGATGCTGCCACCAGCTG
CACAGGCTGCGAACGAAGGGGAGCCTGCGTCAGCCTCAACAACGCCGCGC
TCAAACTGTTCGAGCGGTATCAACAGCGGCTTCCGGGGAGCCGCAGGCCC
CAATTCGACCAAGGGAACAAGCAGGCATCATCAGAATATTGCCCCTGAAC
ACACAGGCGCTACTCTTCATCACATCAGCCACCTTCATCAGCCTTCGGGC
CTTCGGCGCGGTCCTGGCGGATCTGACACTGGGATTTTGTCGGTAACTGC
AGCGACAAACATGCCTCGAACGGACTCACAGGACAGTCTGTCGGTGCTAG
GGCGCACCATCTCGGCAGATGCACTCGGCCACCTCACGGACTTCCCCCAT
ACCACCAGTTTGGGTGACCTTGCCGGCCTGAATATGTTCACATCCAGCCC
TTTTCCCTCCACCGACAATCTTTTGAGCCTGCACCAGCATCAGCACCAAC
AGACGGTAGCGGCGGCACCCAGAGGCCATACTACTCTCTCAGCGCATAAC
GCAACAAGCGTGGCGGCAGCGGCGGCAGCAGCAGCCGTCGCCCCTTCGAG
CACGTCCATCAGTCGCAACACAGGGGACAGTGCCCCCCGCGGCCCCAACG
TGAGTGGACACGGGTCTCAGCTGCCAATGAGCACCACCCGTGGCACTGTG
GCAACGGTCACACAAAATCCTGTCATAACAGCAACCGCGAGGAATGCCGG
TGGTGCAAACACTGCTGGATCGGTTTCATCAACGACGACGACCCAAAAGC
GGATTCCGCGTGTGGATTCGGCCACAGGCTTGTCCTCCCTGCGTGTCATG
AGCGGGCTGCCTCGAAACACCTCCGTTGAGGACTTTCTGTCGCTGGTGGA
TTACGGAGATATTCCTGCACCAGACAAGGACCTCCTCTCGAAGTGCGTTT
TCCCTCAGAACAGCGCTGCACGCGCTGCCCAGACCGCTGCCTCACAGCAG
GCTGCCGTGGCGTTCACAGGCATTGGGAAGCCTTCAGTCATCCTCGCTGG
CGGTGTGAAGGTGGAAGGCGGCGCACCCACAGGACCAATACCCGGGGACT
CACACGATGTTGCGGGAGGAAAACGTGATCGAGGTGATACCTTACCTACG
ATATCGACAGGAAGTTCAGCGATGGGTGCCAGGTTGAAGCAACCGAAAAT
TGAAAGATAA

protein sequence of rna387

>rna387-protein ID=rna387-protein|Name=rna387|organism=Nannochloropsis gaditana|type=polypeptide|length=522bp
MSDFSPSSSPRNSTAERQADHQTPSPPPDFVVATEKTIKRWLETSALRPK
LFHAPERQSDRHYYHAHNEILSPEKAHRQYMLVKDDFTKKDPEWQDDLPL
FGAAAPSFHDHPLTREQEAASRRVLCVLGYTCEIDFCPLLLDLVPLLMVF
LPEAVVYAVVHNMHLHRPFYFGIGHRYFLAVMAAFRDYMHRYFPATAAHM
AAVGADTEDWLGLIFYRCLIPLVGHRHLLQLLELYLEDGVCFFFRFMLAL
FKEIKWRLKAMLLESGAMWWGQVADFTFSIDFDVKQGLTTVLTHYGTHVK
RSNLDRLLAVRMSDPMERELIVKQDIEPLRLHGTTKGADGHVSILHNKRT
YLKLIASFLPHHQRHRPLKMLFSSERHGRSLDTLYRACRNQQPCIILIEE
LRHEHVIGAFCPDPIHPEKAVSGTGAAFLFRLTRPAVRYAWVGDSTRASE
ERDVFQLATPHFFALGMSNDSDHPGLLIDADLDTGSSQQSKTFANLPLCG
SGSEKFSIRRVEVLVLMTPAHS

mRNA from alignment at CM002455.1:950522..952090+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna387 ID=rna387|Name=rna387|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp|location=Sequence derived from alignment at CM002455.1:950522..952090+ (Nannochloropsis gaditana)
ATGTCAGATTTCAGtccttcgtcttcaccaCGGAACTCAACAGCGGAACG
CCAAGCTGATCACCagacgccgtcgccgccgcctgaTTTTGTGGTGGCCA
CTGAGAAAACAATTAAAAGATGGCTGGAGACCAGTGCGTTGCGGCCTAAA
CTCTTTCATGCACCTGAGCGGCAAAGCGATCGTCATTACTATCATGCGCA
CAATGAGATTTTGAGCCCTGAAAAAGCCCACCGACAGTATATGCTTGTCA
AGGATGACTTCACGAAAAAAGATCCCGAGTGGCAAGATGACCTCCCACTT
TTTGGTGCAGCTGCTCCATCATTCCATGACCATCCTTTGACTCGAGAGCA
GGAGGCTGCAAGTCGGAGAGTTCTGTGTGTCTTGGGCTACACGTGTGAGA
TTGATTTCTGCCCCCTTCTGCTGGACCTGGTCCCGTTGTTGATGGTGTTC
CTACCCGAAGCAGTAGTGTACGCAGTCGTCCATAATATGCACCTTCATCG
ACCTTTCTATTTCGGCATTGGACATAGATATTTTTTGGCGGTCATGGCAG
CTTTCCGGGACTACATGCACCGCTATTTCCCCGCAACCGCAGCACACATG
GCAGCAGTGGGAGCCGACACAGAGGACTGGCTTGGCTTGATATTTTACAG
ATGCCTGATCCCATTGGTTGGACATCGACATTTGCTGCAGCTATTAGAGC
TCTATTTAGAGGACGGtgtttgtttttttttccgctTCATGTTAGCGCTT
TTCAAGGAAATCAAATGGCGGCTTAAGGCTATGCTGCTGGAGAGCGGTGC
TATGTGGTGGGGCCAGGTAGCCGATTTCACGTTCAGCATTGACTTCGACG
TGAAGCAAGGCCTAACCACAGTTTTGACTCACTATGGCACGCACGTCAAG
AGAAGCAATTTGGATCGTTTGCTGGCAGTACGCATGAGCGATCCCATGGA
GCGGGAGCTAATTGTGAAACAAGATATAGAGCCTCTACGACTGCATGGCA
CTACCAAGGGTGCGGACGGGCATGTCAGCATACTTCACAATAAAAGAACC
TATCTGAAACTTATAGCAAGCTTTTTACCACATCACCAGCGCCATCGCCC
ATTGAAAATGCTTTTTTCTAGTGAGCGTCACGGTCGCAGCCTCGACACGT
TGTACCGAGCATGTCGAAATCAACAGCCGTGTATAATTCTCATAGAAGAA
TTACGGCATGAGCATGTGATCGGGGCCTTCTGTCCCGACCCTATACACCC
GGAGAAGGCAGTAAGTGGCACAGGTGCAGCGTTTCTTTTCCGTTTGACTC
GTCCTGCCGTGCGGTACGCCTGGGTGGGCGATTCCACACGAGCATCGGAG
GAGCGAGATGTATTCCAGCTAGCGACACCTCATTTCTTTGCATTGGGAAT
GAGCAATGACTCAGACCACCCAGGCCTCCTCATAGACGCAGACCTAGATA
CCGGGAGCAGTCAGCAGAGCAAAACATTTGCAAATCTTCCCTTGTGTGGA
TCTGGAAGCGAAAAGTTTAGCATAAGGCGTGTCGAGGTACTCGTGCTCAT
GACACCGGCTCACTCCTGA

Coding sequence (CDS) from alignment at CM002455.1:950522..952090+

>rna387 ID=rna387|Name=rna387|organism=Nannochloropsis gaditana|type=CDS|length=1569bp|location=Sequence derived from alignment at CM002455.1:950522..952090+ (Nannochloropsis gaditana)
ATGTCAGATTTCAGtccttcgtcttcaccaCGGAACTCAACAGCGGAACG
CCAAGCTGATCACCagacgccgtcgccgccgcctgaTTTTGTGGTGGCCA
CTGAGAAAACAATTAAAAGATGGCTGGAGACCAGTGCGTTGCGGCCTAAA
CTCTTTCATGCACCTGAGCGGCAAAGCGATCGTCATTACTATCATGCGCA
CAATGAGATTTTGAGCCCTGAAAAAGCCCACCGACAGTATATGCTTGTCA
AGGATGACTTCACGAAAAAAGATCCCGAGTGGCAAGATGACCTCCCACTT
TTTGGTGCAGCTGCTCCATCATTCCATGACCATCCTTTGACTCGAGAGCA
GGAGGCTGCAAGTCGGAGAGTTCTGTGTGTCTTGGGCTACACGTGTGAGA
TTGATTTCTGCCCCCTTCTGCTGGACCTGGTCCCGTTGTTGATGGTGTTC
CTACCCGAAGCAGTAGTGTACGCAGTCGTCCATAATATGCACCTTCATCG
ACCTTTCTATTTCGGCATTGGACATAGATATTTTTTGGCGGTCATGGCAG
CTTTCCGGGACTACATGCACCGCTATTTCCCCGCAACCGCAGCACACATG
GCAGCAGTGGGAGCCGACACAGAGGACTGGCTTGGCTTGATATTTTACAG
ATGCCTGATCCCATTGGTTGGACATCGACATTTGCTGCAGCTATTAGAGC
TCTATTTAGAGGACGGtgtttgtttttttttccgctTCATGTTAGCGCTT
TTCAAGGAAATCAAATGGCGGCTTAAGGCTATGCTGCTGGAGAGCGGTGC
TATGTGGTGGGGCCAGGTAGCCGATTTCACGTTCAGCATTGACTTCGACG
TGAAGCAAGGCCTAACCACAGTTTTGACTCACTATGGCACGCACGTCAAG
AGAAGCAATTTGGATCGTTTGCTGGCAGTACGCATGAGCGATCCCATGGA
GCGGGAGCTAATTGTGAAACAAGATATAGAGCCTCTACGACTGCATGGCA
CTACCAAGGGTGCGGACGGGCATGTCAGCATACTTCACAATAAAAGAACC
TATCTGAAACTTATAGCAAGCTTTTTACCACATCACCAGCGCCATCGCCC
ATTGAAAATGCTTTTTTCTAGTGAGCGTCACGGTCGCAGCCTCGACACGT
TGTACCGAGCATGTCGAAATCAACAGCCGTGTATAATTCTCATAGAAGAA
TTACGGCATGAGCATGTGATCGGGGCCTTCTGTCCCGACCCTATACACCC
GGAGAAGGCAGTAAGTGGCACAGGTGCAGCGTTTCTTTTCCGTTTGACTC
GTCCTGCCGTGCGGTACGCCTGGGTGGGCGATTCCACACGAGCATCGGAG
GAGCGAGATGTATTCCAGCTAGCGACACCTCATTTCTTTGCATTGGGAAT
GAGCAATGACTCAGACCACCCAGGCCTCCTCATAGACGCAGACCTAGATA
CCGGGAGCAGTCAGCAGAGCAAAACATTTGCAAATCTTCCCTTGTGTGGA
TCTGGAAGCGAAAAGTTTAGCATAAGGCGTGTCGAGGTACTCGTGCTCAT
GACACCGGCTCACTCCTGA

Synonyms

Publications