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Properties
| Property Name | Value |
|---|
| Product | SH2 domain protein |
| Orig transcript id | gnl|cribi|Naga_100018g38.2775.mrna |
| Orig protein id | gnl|cribi|Naga_100018g38.2775 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:277925..281695 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3868 ID=rna3868|Name=rna3868|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp
AGGGGCCTGTCTGGCCGCCTGGGAGGGTCTCGCTAAGAAAGGAAAGCCTC
GCCAGCCCATTCCATGCACATTTCAACCTCGACCTCTTCTAACAAGAACA
CCCCATTCACACGCTCATTATCCCCTCCATACCCTCTTATACAGCAGGAC
AGTCCATGGCTTCCTATGGCCATCATCAGCCGCAACAATGGTACGCGGGT
GGTCCCTCCTCATTCGACACTAGGGCGGGCGCTATGGCGGGCGCACCAGG
AGGCTCATACCCCGCCCCTGGCATGAGTGGAGCGGGGACTGTACCGGGAA
GCAATTATCTCGCACAAGGAGTGAGTGGAGGCAGTACGATGGTGAATGGC
GGTGGTGGGCAGTGGGGGGGGTCCATGGATTCCGGCGGAGGAGAGGAGGA
CTACTCGATGGAGCCCCCGCTGCTCGTTGAATTGGGCATTAATTTTCAGC
ATATATGGGAGAAGACCAAGACAGTTTTGATGCCGCTGGGATCCATGGAC
GAGCATATCATGGACGATGCGGACTTGGCGGGGCCTCTTTTCTTCCTACT
CTCCTTTGGCATTTTCTTATTGATGACGGGAAAGGTGCATTTCGGGTATA
TATACGGATTCGGTGTTTCAGGCTGCATCGCTATGTATCTGGTTCTGAAT
CTTCTGAGCCCCAAGGACATCGACGTCTGGCGCGTCTGCTCCATCCTCGG
CTACGGCCTCCTCCCCGTCATAGGCCTGGCCTTCCTGGGCATTGCCGTCT
CGCTCAAGGGCGGCGTGGGCCAGGGTCTCGCCACCCTGACGATTGCGTGG
TCCACGTACGCCTCCACTCGCCTCTTCGAGAAGGCCCTGAACATGAGTCA
GCAGAGGTATCTGGTTGCCTACCCCGTCGCCCTTGTATATGCGATTTTCG
TGCTGATCACGGTCTTTTGATAACATGATTCGCAGGGCAGAGGGACGGGA
AGGGAGGGGCGTCGGGGCCGTGGGGTGGCAGTGTAAACTGGGTGTGAGGG
TTACACATACACAATATTGGAAACCCAAAGAAGCAAAGAATGGCACGCTG
AAGTACCACTCAAG back to topprotein sequence of rna3868 >rna3868-protein ID=rna3868-protein|Name=rna3868|organism=Nannochloropsis gaditana|type=polypeptide|length=609bp
MRSLRYGYVDTEKARAQRRQGRSPAPCLSPAFSWPRAGFPRVALASYQPP
RGWLPSEDLAVLFGRSPAASVTLGVFQRQQLDRRRERRTLMPSSVPLPLP
STPPSPPPDPGWRHLAGSMGREAAERLLRAKPPGTFLLRRYDERSLRLSY
RTRTGVEHAPLVFTREGRWAHVRRVSTAGVASPGAGGGAGRGGGYFSPPS
TAPSTPLRGDRRDRSASTSSTSSPSTSSPSSPSSLPGSTLPVSTHALFQA
QAFGHQLHAPFPSVPLSIRPARRMGRGSIGRSEGPLTSPFQPPPQSEALQ
PPPSAPPQSFASLEELLSFFRRKAAHGLCFRRVPGTCDYEELSEGGDGRR
KTGPWLGEQEGGEGGGGGMGGGRVLLGWFQRRISQPGTASAEGRGGPSKQ
EGGRKGKAQAQGGTCTEDTFPSSVEVVEVFKSLHEVLAAVGRRDGAERQG
RGGVEAREREAGLGTEEEEDQMSLLRLCDQSAEPVLAALGLKTVSPAPEE
GPWRQEHGREGEAMDLAALVEKIVLLDMKIFQLLSTINRLLLVATSVPSS
SSPSPPPSMPPSPSASSSRTKTRGQKTACLEALRVLGRWRPLLKTLRLRF
QTEWQYTHE back to topmRNA from alignment at CM002462.1:277925..281695+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3868 ID=rna3868|Name=rna3868|organism=Nannochloropsis gaditana|type=mRNA|length=3771bp|location=Sequence derived from alignment at CM002462.1:277925..281695+ (Nannochloropsis gaditana)
AACAGCACTTTTTAAATGGATTATATACACATGGTCTGCGGACACTGAGC
TTTTGGCCCGTCTgcgcccctccttggcccttATGaatccacttcctccc
gttcAGCTCGAAGTTACTCAAAAAATTCTCCTTGTGGGCGGAGCCGCGGT
TGGCAAAACAAGCTTCATTCGTCGCTTTTTCAATGAACCCTTGCACGGCT
TACAATATGTTCCAACGGTCGGCGTGGACGTGATCGtctaccccctcccc
ccgcaacCAATGACCGTGCGAAATAAACCTCTCCCCGGCTCCTTGGACAA
CAAAGCGGGCGCATCCGAAAATTTCCTCCCTACGAACACCACCACGGCCC
ATAAGGGCAGCATAATCCGTGTCCGAGACGACACGCGTCCTGTGCACCTG
CACTTTTGGGACGTGAGTCACAAGGAgctcaccgcctcccccagtcACCA
CGCCTTGATCTGCACCCACGTGGCCGGTgtcttccttgtctttgaCGTGG
GAAACCGGGCTTCGCTGGCGGCCGTCGATGCCTGGcagcacctcctcgct
cactaCGTCCCTGCGCACATCCCTCGGGTCTTATTGGCCCACAAGGCGGA
CCTGATGAACGACAGCCGGTGCTGCGTCACGGACCGGATCTTGGAGGCCT
ACCGACGGGCGGCCGGTCTCACGGACTGGTGTTGGACGGTGGGCCACGAA
TGTTTCGGAGATTACGTGGCAAGTCGCTCGAGCAAGTCGAGGCCCGTGGC
GGATGCGGTCCAGCTCTTAGTGGATCACATGCAGTGGGGCCGGGAAGGCC
GCgaccgaggggagggagggggaggaagcggggggaggacgggggggagg
aggggcggggggaccAGAAGCTttcgtggggaggggagaacgaTGGGGGA
ACGGAGAGAGGGCGTTTGAGGGCCATGTCTCGGTCCAAGAAGGGgatgaa
aagggagagggggaggcgaaggcaaggagggagccacagcgcggggaggg
agggagggaggacgggcgggagggaggggcggaggaaggatgcTCGGCCA
TGCGCAGCCTCCGGTACGGGTACGTGGACACAGAGAAGGCGCGCGCTCAA
CGACGACAGGGGCGATCCCCAGCTCCCTGCTTGtcccccgctttctcctG
GCCCCGTGCAGGCTTCCCCCGGGTGGCGCTGGCCTCCTACCAACCGCCGC
GGGGATGGCTGCCCTCGGAGGACCTGGCGGTGCTCTTTGGCCGCAGTCCC
GCTGCGTCTGTCACCCTTGGAGTTTTCCAACGGCAGCAGCTAGACCGACG
TCGGGAGAGGCGGACATTAATGCCCTCAagcgtccccctccccctccctt
ccacccctccttccccaccccccgaTCCTGGATGGAGGCACTTGGCCGGA
AgcatgggccgggaggcAGCAGAGCGCCTTCTCCGTGCCAAGCCCCCCGG
CACCTTTCTCCTGCGACGCTACGACGAacgctccctccgcctctcctacC
GGACCCGCACCGGCGTCGAGCATGCCCCTTTGGTGTTCacgcgggagggg
cgctGGGCCCATGTCCGGAGGGTCTCCACGGCAGGAGTGGCCTCCCctgg
tgccgggggaggggctgggagaggcggggggtaCTTCTCTCCCCCAAGCA
CGGCGCCCAGCACCCCCCTGCGAGGGGACCGCCGAGACCgttctgcctcc
acctcctccacctcctctccttccacctcctcgccctcctccccttcttc
cctgcccggGTCCACCCTGCCCGTGTCCACCCACGCGCTCTTCCAGGCGC
AGGCCTTCGGGCACCAGCTCcacgcccccttcccttcggtGCCGCTTTCC
ATTCGCCCGGCCCGGCGGATGGGCCGAGGTTCGATTGGCAGGTCGGAGGG
GCCCTTGACCAGTCCTTTCCAGCCACCTCCACAATCAGAGGCACTCCAAC
CACCTCCATCCGCCCCTCCGCAGTCGTTTGCAAGCTTGGAGGAGCTCCTG
TCCTTTTTtaggaggaaagcggcccACGGCCTCTGCTTTCGGCGCGTCCC
TGGGACCTGCGACTACGAGGAGTTGAGCGAGGGTGGGGACGGCCGGAGAA
AGACAGGGCCCTGGCTGGGagaacaggaaggaggggaagggggaggggga
gggatggggggaggacgggtgcTGCTTGGCTGGTTCCAGCGGCGGATCTC
TCAACCCGGAACGGCGAGtgcggagggccgggggggcccttcgaagcagg
agggcgggcgaaaGGGCAAGGCCCAGGCACAGGGAGGCACATGCACTGAG
GATACCTTTCCGTCGTccgtggaggtggtggaggtgttTAAGTCCCTCCA
TgaggtgctggcggccgTGGGGAGGCGGGACGGGGCCGAGCGccagggca
gggggggggtggaagcacgggaaagagaggctgGGCtgggcacggaggag
gaagaggatcaGATGAGCTTGCTTCGGCTGTGCGACCAGAGCGCCGAGCC
AGTCCTTGCGGCGTTGGGGCTGAAGACCGTCTCCCCGGCACCCGAGGAGG
GGCCCTGGAGGCAGGAgcacgggcgggagggggaggcgatggacCTGGCC
GCGCTGGTAGAGAAGATTGTGCTGCTAGACATGAAAATTTTTCAGCTCCT
TTCGACCATCAACAGACTTTTGCTGGTTGCcacctccgtcccctcttcgt
cctccccttcccctcctccctctatgcccccttccccctccgcgtcctct
tcccgcacCAAGACGCGCGGTCAGAAGACGGCCTGTCTGGAAGCCTTAAG
GGTCCTGGGTCGATGGAGACCCCTACTCAAGACGCTTCGCCTCCGCTTTC
AGACAGAATGGCAGTATACACACGAGTAGGGGCATCGTCCTGGGCTAgca
acctcctcttcggcgGTGGGAAGCCCGGAGTAAGGGCCGTGTGGGCGGGC
GTAAGAATGGCAAAAGCTGGACAGTCGGCTCCAAAACAAATGACACAAGG
AGTTCCTGACCGCACAAGGGCTGGAGTGAGGGCGACTTGAGTCTCCGCAT
TCTTGTTTCTTTGATTTTTACACGGTGGGCCGGCGTGGCTTGCCTtgttc
ctccctgcctttccaccgccaccatTTGTTTGGTTTTCGGCCCAAACGAA
AGCACCCAAAGACTCCTCAACACCTGTCGTCGTGGTATAACCAGTtggcc
tgctccttccccggAGGGTTGTCGGCGTGCACGTGGTTGTCCTGCGGgat
cttcttctccctcgccgaaGAGAGCATGGACAGGATGGACAGAGCCAGCA
TGGAGGCTGTCATGTTCGGCCGCCAGTCCCTCCCCAGCAAATTCAAGCAG
ATGTCCCCGTTTGTGTAGACATGTTCATGCCGTGGCGGGGGTTGCAAGAA
GTATACCGAGGGGGGCTTGCTAGGGTAGTCCATGGGGAAAGTGAACTGTC
GTGGGAGAGACGTAGGGAGGGGACGCTGGGTAACGAACGAGCCATAATAC
TGAAGATACTGAGTGAAAAGGCACAAGTTCAGGCATACGGCTGAGTTTCC
TGTGAAAAAATCTGTCTCGGACCCCTCACAGCCGCCGATTGCCGGCTTAC
TCGGACTAATATGTGCCAAGACATCCTAGAGGGGAAGATCATGCGACATA
ATACAGAACCGTCGCCCTCGCACTAGATCGTGCCCGCACAAATTCTCTTC
CATCATCGCCTTCAACTAATCTTTACCTTAAGTTTGTACTTCTCCCCCGC
AAAGATGGTCCCTTTCGCACC back to topCoding sequence (CDS) from alignment at CM002462.1:277925..281695+ >rna3868 ID=rna3868|Name=rna3868|organism=Nannochloropsis gaditana|type=CDS|length=1830bp|location=Sequence derived from alignment at CM002462.1:277925..281695+ (Nannochloropsis gaditana)
ATGCGCAGCCTCCGGTACGGGTACGTGGACACAGAGAAGGCGCGCGCTCA
ACGACGACAGGGGCGATCCCCAGCTCCCTGCTTGtcccccgctttctcct
GGCCCCGTGCAGGCTTCCCCCGGGTGGCGCTGGCCTCCTACCAACCGCCG
CGGGGATGGCTGCCCTCGGAGGACCTGGCGGTGCTCTTTGGCCGCAGTCC
CGCTGCGTCTGTCACCCTTGGAGTTTTCCAACGGCAGCAGCTAGACCGAC
GTCGGGAGAGGCGGACATTAATGCCCTCAagcgtccccctccccctccct
tccacccctccttccccaccccccgaTCCTGGATGGAGGCACTTGGCCGG
AAgcatgggccgggaggcAGCAGAGCGCCTTCTCCGTGCCAAGCCCCCCG
GCACCTTTCTCCTGCGACGCTACGACGAacgctccctccgcctctcctac
CGGACCCGCACCGGCGTCGAGCATGCCCCTTTGGTGTTCacgcgggaggg
gcgctGGGCCCATGTCCGGAGGGTCTCCACGGCAGGAGTGGCCTCCCctg
gtgccgggggaggggctgggagaggcggggggtaCTTCTCTCCCCCAAGC
ACGGCGCCCAGCACCCCCCTGCGAGGGGACCGCCGAGACCgttctgcctc
cacctcctccacctcctctccttccacctcctcgccctcctccccttctt
ccctgcccggGTCCACCCTGCCCGTGTCCACCCACGCGCTCTTCCAGGCG
CAGGCCTTCGGGCACCAGCTCcacgcccccttcccttcggtGCCGCTTTC
CATTCGCCCGGCCCGGCGGATGGGCCGAGGTTCGATTGGCAGGTCGGAGG
GGCCCTTGACCAGTCCTTTCCAGCCACCTCCACAATCAGAGGCACTCCAA
CCACCTCCATCCGCCCCTCCGCAGTCGTTTGCAAGCTTGGAGGAGCTCCT
GTCCTTTTTtaggaggaaagcggcccACGGCCTCTGCTTTCGGCGCGTCC
CTGGGACCTGCGACTACGAGGAGTTGAGCGAGGGTGGGGACGGCCGGAGA
AAGACAGGGCCCTGGCTGGGagaacaggaaggaggggaagggggaggggg
agggatggggggaggacgggtgcTGCTTGGCTGGTTCCAGCGGCGGATCT
CTCAACCCGGAACGGCGAGtgcggagggccgggggggcccttcgaagcag
gagggcgggcgaaaGGGCAAGGCCCAGGCACAGGGAGGCACATGCACTGA
GGATACCTTTCCGTCGTccgtggaggtggtggaggtgttTAAGTCCCTCC
ATgaggtgctggcggccgTGGGGAGGCGGGACGGGGCCGAGCGccagggc
agggggggggtggaagcacgggaaagagaggctgGGCtgggcacggagga
ggaagaggatcaGATGAGCTTGCTTCGGCTGTGCGACCAGAGCGCCGAGC
CAGTCCTTGCGGCGTTGGGGCTGAAGACCGTCTCCCCGGCACCCGAGGAG
GGGCCCTGGAGGCAGGAgcacgggcgggagggggaggcgatggacCTGGC
CGCGCTGGTAGAGAAGATTGTGCTGCTAGACATGAAAATTTTTCAGCTCC
TTTCGACCATCAACAGACTTTTGCTGGTTGCcacctccgtcccctcttcg
tcctccccttcccctcctccctctatgcccccttccccctccgcgtcctc
ttcccgcacCAAGACGCGCGGTCAGAAGACGGCCTGTCTGGAAGCCTTAA
GGGTCCTGGGTCGATGGAGACCCCTACTCAAGACGCTTCGCCTCCGCTTT
CAGACAGAATGGCAGTATACACACGAGTAG back to top
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