EWM26795.1, cds3859 (CDS) Nannochloropsis gaditana

Overview
NameEWM26795.1
Unique Namecds3859
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:278974..280803 +

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Properties
Property NameValue
Protein idEWM26795.1
ProductSH2 domain protein
Orig transcript idgnl|cribi|Naga_100018g38.2775.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:278974..280803 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000980SH2
Homology
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BLAST of EWM26795.1 vs. NCBI_GenBank
Match: gi|585108886|gb|EWM26795.1| (SH2 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1191.79 bits (3082), Expect = 0.000e+0
Identity = 609/609 (100.00%), Postives = 609/609 (100.00%), Query Frame = 0 
Query:    1 MRSLRYGYVDTEKARAQRRQGRSPAPCLSPAFSWPRAGFPRVALASYQPPRGWLPSEDLAVLFGRSPAASVTLGVFQRQQLDRRRERRTLMPSSVPLPLPSTPPSPPPDPGWRHLAGSMGREAAERLLRAKPPGTFLLRRYDERSLRLSYRTRTGVEHAPLVFTREGRWAHVRRVSTAGVASPGAGGGAGRGGGYFSPPSTAPSTPLRGDRRDRSASTSSTSSPSTSSPSSPSSLPGSTLPVSTHALFQAQAFGHQLHAPFPSVPLSIRPARRMGRGSIGRSEGPLTSPFQPPPQSEALQPPPSAPPQSFASLEELLSFFRRKAAHGLCFRRVPGTCDYEELSEGGDGRRKTGPWLGEQEGGEGGGGGMGGGRVLLGWFQRRISQPGTASAEGRGGPSKQEGGRKGKAQAQGGTCTEDTFPSSVEVVEVFKSLHEVLAAVGRRDGAERQGRGGVEAREREAGLGTEEEEDQMSLLRLCDQSAEPVLAALGLKTVSPAPEEGPWRQEHGREGEAMDLAALVEKIVLLDMKIFQLLSTINRLLLVATSVPSSSSPSPPPSMPPSPSASSSRTKTRGQKTACLEALRVLGRWRPLLKTLRLRFQTEWQYTHE 609
            MRSLRYGYVDTEKARAQRRQGRSPAPCLSPAFSWPRAGFPRVALASYQPPRGWLPSEDLAVLFGRSPAASVTLGVFQRQQLDRRRERRTLMPSSVPLPLPSTPPSPPPDPGWRHLAGSMGREAAERLLRAKPPGTFLLRRYDERSLRLSYRTRTGVEHAPLVFTREGRWAHVRRVSTAGVASPGAGGGAGRGGGYFSPPSTAPSTPLRGDRRDRSASTSSTSSPSTSSPSSPSSLPGSTLPVSTHALFQAQAFGHQLHAPFPSVPLSIRPARRMGRGSIGRSEGPLTSPFQPPPQSEALQPPPSAPPQSFASLEELLSFFRRKAAHGLCFRRVPGTCDYEELSEGGDGRRKTGPWLGEQEGGEGGGGGMGGGRVLLGWFQRRISQPGTASAEGRGGPSKQEGGRKGKAQAQGGTCTEDTFPSSVEVVEVFKSLHEVLAAVGRRDGAERQGRGGVEAREREAGLGTEEEEDQMSLLRLCDQSAEPVLAALGLKTVSPAPEEGPWRQEHGREGEAMDLAALVEKIVLLDMKIFQLLSTINRLLLVATSVPSSSSPSPPPSMPPSPSASSSRTKTRGQKTACLEALRVLGRWRPLLKTLRLRFQTEWQYTHE
Sbjct:    1 MRSLRYGYVDTEKARAQRRQGRSPAPCLSPAFSWPRAGFPRVALASYQPPRGWLPSEDLAVLFGRSPAASVTLGVFQRQQLDRRRERRTLMPSSVPLPLPSTPPSPPPDPGWRHLAGSMGREAAERLLRAKPPGTFLLRRYDERSLRLSYRTRTGVEHAPLVFTREGRWAHVRRVSTAGVASPGAGGGAGRGGGYFSPPSTAPSTPLRGDRRDRSASTSSTSSPSTSSPSSPSSLPGSTLPVSTHALFQAQAFGHQLHAPFPSVPLSIRPARRMGRGSIGRSEGPLTSPFQPPPQSEALQPPPSAPPQSFASLEELLSFFRRKAAHGLCFRRVPGTCDYEELSEGGDGRRKTGPWLGEQEGGEGGGGGMGGGRVLLGWFQRRISQPGTASAEGRGGPSKQEGGRKGKAQAQGGTCTEDTFPSSVEVVEVFKSLHEVLAAVGRRDGAERQGRGGVEAREREAGLGTEEEEDQMSLLRLCDQSAEPVLAALGLKTVSPAPEEGPWRQEHGREGEAMDLAALVEKIVLLDMKIFQLLSTINRLLLVATSVPSSSSPSPPPSMPPSPSASSSRTKTRGQKTACLEALRVLGRWRPLLKTLRLRFQTEWQYTHE 609
The following BLAST results are available for this feature:
BLAST of EWM26795.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108886|gb|EWM26795.1|0.000e+0100.00SH2 domain protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3868rna3868Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications