rna3867, rna3867 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3867
Unique Name	rna3867
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2376
Alignment location	CM002462.1:276366..277695 -

Link to JBrowse

Properties


Property Name	Value
Product	yip1 domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100018g39.2771.mrna
Orig protein id	gnl\|cribi\|Naga_100018g39.2771
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:276366..277695 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g39	gene3720	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3867	rna3867-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26791.1	cds3858	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:276366..277695-
coding sequence from alignment at CM002462.1:276366..277695-

mRNA sequence

>rna3867 ID=rna3867|Name=rna3867|organism=Nannochloropsis gaditana|type=mRNA|length=2376bp
GGAAGGAAGGGGAGTAAGACGACTGCAGCAATTTCTGCTTGGACAAGACA
TGGGTCAAGTGCCAGAAATGGCATCTTTGTCGGCATCTGACACGCAGCTT
ATGGTAGGCAGATGATTCCGACATGCCAACCGCCATCGGGTCTCACGCAT
CCGAGCTTCACATACCTTTTCCAGGCAAAATCGTGGGAGGCACCGGCAGT
CCGGCACAGGAGTGCAGTGTCACACATGACTGCCTTCTTTCGGCGTAGGA
ATGGGAGTGGGAGCAGCACAAGCAGCAGTTCCTCCTCCTTGGCAGAAGAC
AAGCACTCCATCCTTTCCTCTGAAATCGATCCACTCCCTTGTTCGCCCTC
CACCACCGCCAGTACATGGAAAGGGCCCGACGTGGCGAACAAGGCGAGGG
AGTCGACCTGCCTTGCTCCATCGCACTCCACAACAAGCCAAGGCGCTGCT
GTACCTGGACAGAACGGGGCCATTGCCACTACCGAAGACGCCTCCAAGTC
TGACATAGGACACCTACAAAGACCGCCCCAGGATCCCCTTACCGAGCAGA
TTCTCGACACAGGAAACAAAGGCACGGCAGGACAAGGACACCGTCGGCGC
ACGTCCGCGACGCTCTCATCCTGGGCTTCTTTTTCCTCTTCGAATACCCT
TTCCTTCTTGACGGGCGAGGACTCGTCCATTGTCGCCCCCGTCCGGGGGC
CTGCCAAGCTGGATTTCTCCACGCCCGTCCACCCAGCCACGCAAGCCGTT
GATTTCGTCATCACCTTCCTCCTCGTGCATTACATCCAAGTCTTTTATTC
CCTCGTCTTCCTCTTCATCTACCTGGTCCGGCACGGCTACCGTTGGCCCC
TTGTCCTGGCCGGCCTCTACCTCCCTTCCTATTTTATCCCCTTCCAACGC
CTGGGGGGGTGGCCCTTCCGCCTTCTCATGCGGCGTCCCTTCTGGCGCTG
TGTCCAGCGCACGCTCGCTTTCAAAGTGGAACGGGAGGTGGAACTCTCGC
CCGCCACCCAGTACATCTTCGGCTGGCACCCCCACGGCATCCTCCTTCTC
TCCCGCTTTGCCATCTACGGGGGCCTCTGGGAGAAGCTCTTCCCGGGCGT
GCACTTCAAGACCTTGGCCGCCAGCCCCTTGTTCTGGATCCCGCCCATCC
GGGAGGTATCGATCCTCTTGGGGGGCGTGGACGCAGGGAGGGCCTCTGCC
AATCGGGCCTTGCGGGACGGCTACTCCGTCTCCCTTTACCCGGGGGGGAG
CAAGGAGATCTACACGACGAACCCGTACACGCCCGAGACCACACTGGTGC
TCAAGATTCGGAAGGGCTTCATTCGCATGGCCCTCCGGTACGGATGCCCC
CTGGTCCCTGTCTACACCTTTGGAGAGAAGTACGCCTACCATCGTCTCGG
TCACGCCACCGGCTTCGCCCACTGGCTCCTGGCGGTGCTGCGGGTGCCTT
TTCTGATTTTCTGGGGACGCTGGTGCACCTTTATGCCTCTGAAGCACACG
CAGGTGTCGGTGGTGGTAGGGAAGCCCCTCCCAGTCCCCAAGATCGAGGG
GGAACCCGCGCCTGAGGTGGTGGAGGAGTGGTTGCAGCGGTACTGCGATG
AGGTGCAGGCGCTCTTCCAACGGCATAAACACAAGTACGCACGCCCGGAA
GAGTTCGTGGCGATTTCGTGAGGGCGGCGGGAAGGACAGAGGAAGCGAAG
GAGGGGTGGAGGGAGGGAGGCAGGACAGGCAAAAGGCCTGCAAAGTTGTG
CAGTGTGGCGAGACATGAGTCCGCGCCGATGTAACTAGCAGAAACAGAGA
CATTCATTCCCAAATTTGGAGGGGGAGGAGGGGAAGTGGTGCACGCACGC
GAGGTCGATGGGCAGAAAGATCGTGCGGCCCATCCCATGGGACACAGGGG
GTCTGGACAGGGGTGGTAGGGCGCCGTCTCAAAGGGTCTCCGGAGGTTGC
AGGAGGTGGAGCCCGCATTTGCCTCCGTTCACAGTCGCCTGGCTCTTTTC
CTTTTTCAATCCCTTTTTTTCGTTCAGTTCAGTGACAAAGCGTAGGGGCG
ACAGCTACGGGTGAGGGGTTGGTGGAAAGGGGGGTTTGAGCAGAAACGGA
GGTCAGGAATTTTGTGTCTTGACTCAAGACAGGCGGGTGGGAGGCAGGAC
GGAGGAGGGAAAAAAGCCGTAGGCATGCGGAGCACCAAGACGTAAAGGCG
GGAAGAGGTGCGGAATTTTGGGAAGAAACTTGAGATGGAGAACCGAGGAG
TCTGGGGAGGAATATTTGACACGAGAGGGGGGCATGGAAGAGAGAAGGAG
GAAGGGAGGGCGAGGACCAGAGGGACCCTGGAAAGAATTTTAAAAGGTTG
CCTCACAGCTCACTCGCGACACCACC

protein sequence of rna3867

>rna3867-protein ID=rna3867-protein|Name=rna3867|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MASYGHHQPQQWYAGGPSSFDTRAGAMAGAPGGSYPAPGMSGAGTVPGSN
YLAQGVSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHI
WEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIY
GFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSL
KGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVL
ITVF

mRNA from alignment at CM002462.1:276366..277695-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3867 ID=rna3867|Name=rna3867|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp|location=Sequence derived from alignment at CM002462.1:276366..277695- (Nannochloropsis gaditana)
AGGGGCCTGTCTGGCCGCCTGGGAGGGTCTCGCTAAGAAAGGAAAGCCTC
GCCAGCCCATTCCATGCACATTTCAACCTCGACCTCTTCTAACAAGAACA
CCCCATTCACACGCTCATTATCCCCTCCATACCCTCTTATACAGCAGGAC
AGTCCATGGCTTCCTATGGCCATCATCAGCCGCAACAATGGTACGCGGGT
GGTCCCTCCTCATTCGACACTAGGGCGGGCGCTATGGCGGGCGCACCAGG
AGGCTCATACCCCGCCCCTGGCATGAGTGGAGCGGGGACTGTACCGGGAA
GCAATTATCTCGCACAAGGAGTGAGTGGAGGCAGTACGATGGTGAATGGC
GGTGGTGGGCAGTGGGGGGGGTCCATGGATTCCGGCGGAGGAGAGGAGGA
CTACTCGATGGAGCCCCCGCTGCTCGTTGAATTGGGCATTAATTTTCAGC
ATATATGGGAGAAGACCAAGACAGTTTTGATGCCGCTGGGATCCATGGAC
GAGCATATCATGGACGATGCGGACTTGGCGGGGCCTCTTTTCTTCCTACT
CTCCTTTGGCATTTTCTTATTGATGACGGGAAAGGTGCATTTCGGGTATA
TATACGGATTCGGTGTTTCAGGCTGCATCGCTATGTATCTGGTTCTGAAT
CTTCTGGTGAGGGAACGGGATGATATGGGAGGTTATGGGGGGGATGTGGG
TGGATATGCACGCATGAATGGTGCGTAGATGGGATCGTCCTGATATGGCC
TACGGTGGGCAGAGGGATTGGCCTTTCCAGGGTCGTATTTGGCTAAAACC
TGTCCGTGCCGATTCCTTGAATATGGTCCTGACGAACCTGTCCCTCTCCT
CCATTTCCTGCGTTGCCATGCTCGGATGCGACGTCCCACCCCCTGTACTC
TCTTCTTCCTTCCCCACCCCAGAGCCCCAAGGACATCGACGTCTGGCGCG
TCTGCTCCATCCTCGGCTACGGCCTCCTCCCCGTCATAGGCCTGGCCTTC
CTGGGCATTGCCGTCTCGCTCAAGGGCGGCGTGGGCCAGGGTCTCGCCAC
CCTGACGATTGCGTGGTCCACGTACGCCTCCACTCGCCTCTTCGAGAAGG
CCCTGAACATGAGTCAGCAGAGGTATCTGGTTGCCTACCCCGTCGCCCTT
GTATATGCGATTTTCGTGCTGATCACGGTCTTTTGATAACATGATTCGCA
GGGCAGAGGGACGGGAAGGGAGGGGCGTCGGGGCCGTGGGGTGGCAGTGT
AAACTGGGTGTGAGGGTTACACATACACAATATTGGAAACCCAAAGAAGC
AAAGAATGGCACGCTGAAGTACCACTCAAG

Coding sequence (CDS) from alignment at CM002462.1:276366..277695-

>rna3867 ID=rna3867|Name=rna3867|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002462.1:276366..277695- (Nannochloropsis gaditana)
AGCCCCAAGGACATCGACGTCTGGCGCGTCTGCTCCATCCTCGGCTACGG
CCTCCTCCCCGTCATAGGCCTGGCCTTCCTGGGCATTGCCGTCTCGCTCA
AGGGCGGCGTGGGCCAGGGTCTCGCCACCCTGACGATTGCGTGGTCCACG
TACGCCTCCACTCGCCTCTTCGAGAAGGCCCTGAACATGAGTCAGCAGAG
GTATCTGGTTGCCTACCCCGTCGCCCTTGTATATGCGATTTTCGTGCTGA
TCACGGTCTTTTGAATGGCTTCCTATGGCCATCATCAGCCGCAACAATGG
TACGCGGGTGGTCCCTCCTCATTCGACACTAGGGCGGGCGCTATGGCGGG
CGCACCAGGAGGCTCATACCCCGCCCCTGGCATGAGTGGAGCGGGGACTG
TACCGGGAAGCAATTATCTCGCACAAGGAGTGAGTGGAGGCAGTACGATG
GTGAATGGCGGTGGTGGGCAGTGGGGGGGGTCCATGGATTCCGGCGGAGG
AGAGGAGGACTACTCGATGGAGCCCCCGCTGCTCGTTGAATTGGGCATTA
ATTTTCAGCATATATGGGAGAAGACCAAGACAGTTTTGATGCCGCTGGGA
TCCATGGACGAGCATATCATGGACGATGCGGACTTGGCGGGGCCTCTTTT
CTTCCTACTCTCCTTTGGCATTTTCTTATTGATGACGGGAAAGGTGCATT
TCGGGTATATATACGGATTCGGTGTTTCAGGCTGCATCGCTATGTATCTG
GTTCTGAATCTTCTGAGCCCCAAGGACATCGACGTCTGGCGCGTCTGCTC
CATCCTCGGCTACGGCCTCCTCCCCGTCATAGGCCTGGCCTTCCTGGGCA
TTGCCGTCTCGCTCAAGGGCGGCGTGGGCCAGGGTCTCGCCACCCTGACG
ATTGCGTGGTCCACGTACGCCTCCACTCGCCTCTTCGAGAAGGCCCTGAA
CATGAGTCAGCAGAGGTATCTGGTTGCCTACCCCGTCGCCCTTGTATATG
CGATTTTCGTGCTGATCACGGTCTTTTGAATGGCTTCCTATGGCCATCAT
CAGCCGCAACAATGGTACGCGGGTGGTCCCTCCTCATTCGACACTAGGGC
GGGCGCTATGGCGGGCGCACCAGGAGGCTCATACCCCGCCCCTGGCATGA
GTGGAGCGGGGACTGTACCGGGAAGCAATTATCTCGCACAAGGAGTGAGT
GGAGGCAGTACGATGGTGAATGGCGGTGGTGGGCAGTGGGGGGGGTCCAT
GGATTCCGGCGGAGGAGAGGAGGACTACTCGATGGAGCCCCCGCTGCTCG
TTGAATTGGGCATTAATTTTCAGCATATATGGGAGAAGACCAAGACAGTT
TTGATGCCGCTGGGATCCATGGACGAGCATATCATGGACGATGCGGACTT
GGCGGGGCCTCTTTTCTTCCTACTCTCCTTTGGCATTTTCTTATTGATGA
CGGGAAAGGTGCATTTCGGGTATATATACGGATTCGGTGTTTCAGGCTGC
ATCGCTATGTATCTGGTTCTGAATCTTCTG

Synonyms

Publications